BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0127a.6
         (105 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

IPO4_HUMAN (Q8TEX9) Importin 4 (Importin 4b) (Imp4b) (Ran-bindin...    29  2.3
AHPC_STAEP (Q8CMQ2) Alkyl hydroperoxide reductase subunit C (EC ...    28  3.0
DP3B_SYNY3 (P72856) DNA polymerase III, beta chain (EC 2.7.7.7)        27  6.6
ALA2_HORVU (P52894) Alanine aminotransferase 2 (EC 2.6.1.2) (GPT...    27  8.6

>IPO4_HUMAN (Q8TEX9) Importin 4 (Importin 4b) (Imp4b) (Ran-binding
           protein 4) (RanBP4)
          Length = 1081

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 13/28 (46%), Positives = 18/28 (63%)

Query: 14  LAVSFFLKDGLNVAPSTLQLLQNSANLP 41
           L+ + F K+GL   P  LQLLQ+S + P
Sbjct: 103 LSATIFRKEGLEAWPQLLQLLQHSTHSP 130


>AHPC_STAEP (Q8CMQ2) Alkyl hydroperoxide reductase subunit C (EC
          1.6.4.-)
          Length = 189

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 16/46 (34%), Positives = 26/46 (55%), Gaps = 1/46 (2%)

Query: 13 WLAVSFFLKDGLNVAPSTLQLLQNS-ANLPMVGTPLYAVVSDSVYI 57
          W  V F+  D   V P+ L+ LQN  A L  +G  +Y+V +D+ ++
Sbjct: 35 WNVVCFYPADFSFVCPTELEDLQNQYAKLQELGVNVYSVSTDTHFV 80


>DP3B_SYNY3 (P72856) DNA polymerase III, beta chain (EC 2.7.7.7)
          Length = 391

 Score = 27.3 bits (59), Expect = 6.6
 Identities = 13/30 (43%), Positives = 18/30 (59%), Gaps = 1/30 (3%)

Query: 19  FLKDGLNVAPST-LQLLQNSANLPMVGTPL 47
           +L DGL   PS  +Q+  N  N P++ TPL
Sbjct: 346 YLMDGLKALPSNDIQMQLNEGNQPVIFTPL 375


>ALA2_HORVU (P52894) Alanine aminotransferase 2 (EC 2.6.1.2) (GPT)
           (Glutamic--pyruvic transaminase 2) (Glutamic--alanine
           transaminase 2) (ALAAT-2)
          Length = 482

 Score = 26.9 bits (58), Expect = 8.6
 Identities = 18/57 (31%), Positives = 27/57 (46%), Gaps = 2/57 (3%)

Query: 11  FPWLAVSFFLKDGLNVAPSTLQ--LLQNSANLPMVGTPLYAVVSDSVYISGQHRVPY 65
           FP  A   FL DG +     +   L++N  +  +V  P Y + S S+ + G   VPY
Sbjct: 135 FPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGGALVPY 191


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.355    0.161    0.564 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,384,304
Number of Sequences: 164201
Number of extensions: 343101
Number of successful extensions: 1805
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1804
Number of HSP's gapped (non-prelim): 4
length of query: 105
length of database: 59,974,054
effective HSP length: 81
effective length of query: 24
effective length of database: 46,673,773
effective search space: 1120170552
effective search space used: 1120170552
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 58 (26.9 bits)