BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0126.8
(749 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TXN9_RAT (Q8K581) Thioredoxin domain containing protein 9 (ES ce... 37 0.25
TXN9_MOUSE (Q9CQ79) Thioredoxin domain containing protein 9 (ATP... 37 0.25
YQH3_SCHPO (Q9UU96) Protein C830.03 in chromosome III 33 2.1
RA50_METJA (Q58718) DNA double-strand break repair rad50 ATPase 33 2.1
TRI_THEAC (P96086) Tricorn protease (EC 3.4.21.-) 33 2.8
BXCN_CLOBO (P46081) Botulinum neurotoxin type C1, nontoxic compo... 33 2.8
WD36_HUMAN (Q8NI36) WD-repeat protein 36 (T-cell activation WD r... 33 3.6
ZDH8_HUMAN (Q9ULC8) Zinc finger DHHC domain containing protein 8... 32 4.7
SASA_SYNY3 (Q55630) Adaptive-response sensory-kinase sasA (EC 2.... 32 8.0
RPOC_MYCPE (Q8EWX0) DNA-directed RNA polymerase beta' chain (EC ... 32 8.0
DYHC_SCHPO (O13290) Dynein heavy chain, cytosolic (DYHC) 32 8.0
>TXN9_RAT (Q8K581) Thioredoxin domain containing protein 9 (ES
cell-related protein)
Length = 226
Score = 36.6 bits (83), Expect = 0.25
Identities = 17/73 (23%), Positives = 37/73 (50%)
Query: 553 GNKISDNQKGILINSYYTVTTLLSRFLDTQLTSYLKSADVAIEIFKDRKVLTPLQLEKEY 612
GN D +L N + L+ LD+++ + + +E+ K++++ + +++
Sbjct: 3 GNGSIDMFSEVLENQFLQAAKLVENHLDSEIQKLDQIGEDELELLKEKRLAALRKAQQQK 62
Query: 613 VEWLLQMHGQYDE 625
EWL + HG+Y E
Sbjct: 63 QEWLSKGHGEYRE 75
>TXN9_MOUSE (Q9CQ79) Thioredoxin domain containing protein 9 (ATP
binding protein associated with cell differentiation)
Length = 226
Score = 36.6 bits (83), Expect = 0.25
Identities = 17/73 (23%), Positives = 37/73 (50%)
Query: 553 GNKISDNQKGILINSYYTVTTLLSRFLDTQLTSYLKSADVAIEIFKDRKVLTPLQLEKEY 612
GN D +L N + L+ LD+++ + + +E+ K++++ + +++
Sbjct: 3 GNGSVDMFSEVLENQFLQAAKLVENHLDSEIQKLDQIGEDELELLKEKRLAALRKAQQQK 62
Query: 613 VEWLLQMHGQYDE 625
EWL + HG+Y E
Sbjct: 63 QEWLSKGHGEYRE 75
>YQH3_SCHPO (Q9UU96) Protein C830.03 in chromosome III
Length = 736
Score = 33.5 bits (75), Expect = 2.1
Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 24/180 (13%)
Query: 56 MPLPDFLQLVEDAYNGAREHNQSMKRKKDINWIGAPLFLHDSTDAKIKNVIDFHNYK--- 112
+PL F AR+ + S +K+ ++ + D + ++K +F +YK
Sbjct: 12 VPLSAFAVRQLTLSKAARKKDNSSGKKRSVSEEES----QDKYEDEMKTEGEFPSYKHTL 67
Query: 113 -----PHKCHILQLHGYFDSV*NAMQNMWDLTPDIDLLLELPEEYS-FQTALADLIDNSL 166
P H +LH + +N ++TPDI+ P+EYS F A I SL
Sbjct: 68 VQVVVPGVDHRTKLHS------ESSKNDSEITPDINRSKVNPQEYSEFSVASPQTISPSL 121
Query: 167 QAVWSNGGNSRKLIRVNVGPDKISIFDNGPGMDDTDDNSLVKWGKLGASLHRNSKLQAIG 226
+ + + NV S D P + T++NS L LH++ KL +G
Sbjct: 122 PLNLDD-----ETVSENVPHSPQSSNDAIPVIKITEENSFRVKDTLYVGLHKDQKLAMVG 176
>RA50_METJA (Q58718) DNA double-strand break repair rad50 ATPase
Length = 1005
Score = 33.5 bits (75), Expect = 2.1
Identities = 32/157 (20%), Positives = 70/157 (44%), Gaps = 3/157 (1%)
Query: 521 KCFIETDAGFKPTQTKTDLAHHSPLTTALKNIGNKISDNQKGILINSYYTVTTLLSRFLD 580
K E D+G + + ++ +A+ N+I + + +NS Y +++FL
Sbjct: 83 KIIREYDSGRGGAKLYKNGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLS 142
Query: 581 TQLTSYLKSADVAIEIFKDRKVLTPL-QLEKEYVEWLLQMHGQ--YDEEADSGEDQAVII 637
+ + L++ + I + K + ++ KEY + L ++ G+ Y E + +
Sbjct: 143 LKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKENYEKELKNKMSQ 202
Query: 638 VNPANKKELRISSDVIRVHKVLKRKEKLWKHGERIKV 674
+ NKK + I+ + ++ K + EKL+ E K+
Sbjct: 203 LEEKNKKLMEINDKLNKIKKEFEDIEKLFNEWENKKL 239
>TRI_THEAC (P96086) Tricorn protease (EC 3.4.21.-)
Length = 1071
Score = 33.1 bits (74), Expect = 2.8
Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 2/77 (2%)
Query: 10 TDMDGNAKRKLVLRKDDDDTGKAYRFKILLPNGTSVELTLRDPQPQMPLPDFLQLVEDAY 69
TD+ +A RK V+ + DD GK Y F + P T + P +FLQ+ ++A+
Sbjct: 637 TDLRLSADRKTVMVRKDD--GKIYTFPLEKPEDERTVETDKRPLVSSIHEEFLQMYDEAW 694
Query: 70 NGAREHNQSMKRKKDIN 86
AR++ + K+I+
Sbjct: 695 KLARDNYWNEAVAKEIS 711
>BXCN_CLOBO (P46081) Botulinum neurotoxin type C1, nontoxic
component
Length = 1196
Score = 33.1 bits (74), Expect = 2.8
Identities = 22/53 (41%), Positives = 33/53 (61%), Gaps = 4/53 (7%)
Query: 556 ISDNQKGILINSYYTVTTLLSRFLDTQLTSYLKSADVAIEIFKDRKVLTPLQL 608
I+DN+K ILINS YT T+ +FLD Q ++ V ++ K+ +L+P QL
Sbjct: 789 INDNEKSILINS-YTFKTIDFKFLDIQSIKNFFNSQVE-QVMKE--ILSPYQL 837
>WD36_HUMAN (Q8NI36) WD-repeat protein 36 (T-cell activation WD
repeat protein) (TA-WDRP)
Length = 951
Score = 32.7 bits (73), Expect = 3.6
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 24/153 (15%)
Query: 488 LLPDARWTLLPFMDIRNKKGNRANILKRCSLRVKCFIETDAGFKPTQTKTDLAHHSPLTT 547
LLP++RW L +D+ KK N+ + FI T G P + ++ P +
Sbjct: 756 LLPESRWKNLLNLDVIKKK-NKPKEPPKVPKSAPFFIPTIPGLVPRYAAPE-QNNDPQQS 813
Query: 548 ALKNIGNKISDN------QKGILINSYYTVTTLLSRF----LDTQLTSYLKSADVAIEIF 597
+ N+G + ++G++ N Y T LL ++T+L S +IE+
Sbjct: 814 KVVNLGVLAQKSDFCLKLEEGLVNNKYDTALNLLKESGPSGIETELRSLSPDCGGSIEVM 873
Query: 598 K----------DRKVLTPLQLEKEYVEWLLQMH 620
+ DRK +L + Y+ L++H
Sbjct: 874 QSFLKMIGMMLDRK--RDFELAQAYLALFLKLH 904
>ZDH8_HUMAN (Q9ULC8) Zinc finger DHHC domain containing protein 8
(Zinc finger protein 378)
Length = 673
Score = 32.3 bits (72), Expect = 4.7
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 8 LETDMDGNAKRKLVLRKDDDDTGKAYRFKILLPNGTSVELTLRDPQPQMPLPDFLQLVED 67
L+T G+A+ L +++ T Y+F+ P G V P Q+P PD L L +D
Sbjct: 238 LQTPRPGSAESALSVQRTSPPTPAMYKFRPAFPTGPKVPFC--GPGEQVPGPDSLTLGDD 295
Query: 68 A 68
+
Sbjct: 296 S 296
>SASA_SYNY3 (Q55630) Adaptive-response sensory-kinase sasA (EC
2.7.-.-)
Length = 383
Score = 31.6 bits (70), Expect = 8.0
Identities = 18/74 (24%), Positives = 40/74 (53%), Gaps = 4/74 (5%)
Query: 137 DLTPDIDLLLELP----EEYSFQTALADLIDNSLQAVWSNGGNSRKLIRVNVGPDKISIF 192
+LT D+ +LP +E + +A+L+DN+++ ++G + + ++SI
Sbjct: 256 NLTITYDIPKDLPNVFADEELIRQVIANLLDNAIKYTPAHGSITVGALHRTTQKVQVSIT 315
Query: 193 DNGPGMDDTDDNSL 206
DNGPG+ ++ ++
Sbjct: 316 DNGPGIPNSKQETI 329
>RPOC_MYCPE (Q8EWX0) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (RNAP beta' subunit) (Transcriptase beta'
chain) (RNA polymerase beta' subunit)
Length = 1288
Score = 31.6 bits (70), Expect = 8.0
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 178 KLIRVNVGPDKISIFDNGPGMDDTDDNSLVKWGK 211
K+I +V P+++S +N +++ DN +V+WGK
Sbjct: 634 KVILNDVLPEEMSYLNNPDNLEELSDNDIVEWGK 667
>DYHC_SCHPO (O13290) Dynein heavy chain, cytosolic (DYHC)
Length = 4196
Score = 31.6 bits (70), Expect = 8.0
Identities = 29/130 (22%), Positives = 52/130 (39%), Gaps = 9/130 (6%)
Query: 423 QLRLSFFSGSREIQVANARLRVVYFPFTKGKENIERILEKLADDGCVIRENFLNFSRVSV 482
++ L F S ++ ++Y F+K N ++ D F+NF +
Sbjct: 346 EISLDIFLSSSTLESLQLSAALLYSTFSKKWRNTGYPETRVLD--------FINFITEDL 397
Query: 483 RRL-GRLLPDARWTLLPFMDIRNKKGNRANILKRCSLRVKCFIETDAGFKPTQTKTDLAH 541
+L RLLP L +D ++ ++IL C +R+K F+ K Q+ L +
Sbjct: 398 LKLISRLLPALGALSLSNVDFSHRTAVSSDILSLCYIRLKDFLRISGSLKEEQSYYGLKN 457
Query: 542 HSPLTTALKN 551
A +N
Sbjct: 458 SIKQIKAFEN 467
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.140 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,698,071
Number of Sequences: 164201
Number of extensions: 4050056
Number of successful extensions: 8412
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8403
Number of HSP's gapped (non-prelim): 16
length of query: 749
length of database: 59,974,054
effective HSP length: 118
effective length of query: 631
effective length of database: 40,598,336
effective search space: 25617550016
effective search space used: 25617550016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 70 (31.6 bits)
Lotus: description of TM0126.8