BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0121b.8
(368 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TRKC_HUMAN (Q16288) NT-3 growth factor receptor precursor (EC 2.... 32 2.0
METE_SULSO (Q980A9) Probable methylcobalamin:homocysteine methyl... 32 3.3
TRKC_RAT (Q03351) NT-3 growth factor receptor precursor (EC 2.7.... 31 4.4
TRKC_PIG (P24786) NT-3 growth factor receptor precursor (EC 2.7.... 31 4.4
KAD_ARCFU (O29581) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transp... 31 5.7
CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48) 31 5.7
VAM3_YEAST (Q12241) Syntaxin VAM3 30 7.4
STI1_SCHPO (Q9USI5) Heat shock protein sti1 homolog 30 9.7
NKCR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer... 30 9.7
KOB1_ECOLI (Q52313) Transcriptional repressor protein korB 30 9.7
CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48) 30 9.7
BUD3_YEAST (P25558) Bud site selection protein BUD3 30 9.7
>TRKC_HUMAN (Q16288) NT-3 growth factor receptor precursor (EC
2.7.1.112) (TrkC tyrosine kinase) (GP145-TrkC) (Trk-C)
Length = 839
Score = 32.3 bits (72), Expect = 2.0
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 17/90 (18%)
Query: 77 NVLNRKEETNCREEAFRGDDMVGLIHDAFEGFNQSMGNNISDGGDIESNLDENLTHTSRN 136
N + K E NCR R DD G + EG D G+ N + N+T SRN
Sbjct: 35 NCVCSKTEINCR----RPDD--GNLFPLLEG---------QDSGNSNGNANINITDISRN 79
Query: 137 QSHPEVEKFEQL--MKDANEELYSGCKKFS 164
+ +E + L + + ELY+G +K +
Sbjct: 80 ITSIHIENWRSLHTLNAVDMELYTGLQKLT 109
>METE_SULSO (Q980A9) Probable methylcobalamin:homocysteine
methyltransferase (EC 2.1.1.-) (Methionine synthase)
Length = 332
Score = 31.6 bits (70), Expect = 3.3
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 15/106 (14%)
Query: 100 LIHDAFEGFNQSMGNNISDGGDIESNLDENLTHTSRNQSHPEVEKFEQLMKDANEEL--- 156
L+ D + NQ + N + G I +DE HT + VE + +K N +L
Sbjct: 153 LVFDLAKAINQEIKNLVEAGAKI-IQIDEPALHTRKEDVSWGVEAVNEAVKGVNAKLVMH 211
Query: 157 -----------YSGCKKFSKLSFVLHLYHIKRLFKWTNESFDALLG 191
Y K +++F L +Y+ K L FD LG
Sbjct: 212 ICYGDYSFVAPYFNEIKVDQINFALKIYNYKPLELLKKYGFDKELG 257
>TRKC_RAT (Q03351) NT-3 growth factor receptor precursor (EC
2.7.1.112) (TrkC tyrosine kinase) (GP145-TrkC) (Trk-C)
Length = 864
Score = 31.2 bits (69), Expect = 4.4
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 77 NVLNRKEETNCREEAFRGDDMVGLIHDAFEGFNQSMGNNISDGGDIESNLDENLTHTSRN 136
N + K E NCR R DD G + EG D G+ N N+T SRN
Sbjct: 35 NCVCSKTEINCR----RPDD--GNLFPLLEG---------QDSGNSNGNASINITDISRN 79
Query: 137 QSHPEVEKFEQL--MKDANEELYSGCKKFS 164
+ +E + L + + ELY+G +K +
Sbjct: 80 ITSIHIENWRGLHTLNAVDMELYTGLQKLT 109
>TRKC_PIG (P24786) NT-3 growth factor receptor precursor (EC
2.7.1.112) (TrkC tyrosine kinase) (GP145-TrkC) (Trk-C)
Length = 825
Score = 31.2 bits (69), Expect = 4.4
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 77 NVLNRKEETNCREEAFRGDDMVGLIHDAFEGFNQSMGNNISDGGDIESNLDENLTHTSRN 136
N + K E NCR R DD G + EG D G+ N N+T SRN
Sbjct: 35 NCVCSKTEINCR----RPDD--GNLFPLLEG---------QDSGNSNGNASINITDISRN 79
Query: 137 QSHPEVEKFEQL--MKDANEELYSGCKKFS 164
+ +E + L + + ELY+G +K +
Sbjct: 80 ITSIHIENWRGLHTLNAVDMELYTGLQKLT 109
>KAD_ARCFU (O29581) Adenylate kinase (EC 2.7.4.3) (ATP-AMP
transphosphorylase)
Length = 217
Score = 30.8 bits (68), Expect = 5.7
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 17/104 (16%)
Query: 175 IKRLFKWTNESFDALLGLLKDALPEGEKLPSSHYETKKIVGRLGLKYEKIHACPNDCMLF 234
+ + K N+ DA++ ++ +PE E + Y ++ G Y I+A P
Sbjct: 96 LDEMLKELNKKIDAVINVV---VPEEEVVKRITY--RRTCRNCGAVYHLIYAPP------ 144
Query: 235 RNELADKNVNKCIKCGASRWKNDEKKVPAKVLRYFPLKSRLQRL 278
K NKC KCG ++ D+ K RY K + L
Sbjct: 145 ------KEDNKCDKCGGELYQRDDDKEETVRERYRVYKQNTEPL 182
>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)
Length = 2442
Score = 30.8 bits (68), Expect = 5.7
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 74 ESINVLNRKEETNCREEAFRGDDMVGLIHDAFEGFNQSMGNNISDGGDIESNLDENLTHT 133
ESI L ++EE +EE+ + EG S G+ S ++N N +
Sbjct: 1551 ESIKELEQEEEERKKEESTAASETT-------EG---SQGD--SKNAKKKNNKKTNKNKS 1598
Query: 134 SRNQSHPEVEKFEQLMKDANEELYSGCKKFSKLSFVLHLY 173
S ++++ + + D +++LY+ +K ++ FV+HL+
Sbjct: 1599 SISRANKKKPSMPNVSNDLSQKLYATMEKHKEVFFVIHLH 1638
>VAM3_YEAST (Q12241) Syntaxin VAM3
Length = 283
Score = 30.4 bits (67), Expect = 7.4
Identities = 20/101 (19%), Positives = 47/101 (45%), Gaps = 18/101 (17%)
Query: 72 HGESINVLNRKEETNCREEAFRGDDM-------------VGLIHDAFEGFN---QSMGNN 115
H E + L +EE +++ +++ +G IH A + N +G+
Sbjct: 161 HNEGQHQLQLQEEQEQQQQGLSQEELDFQTIIHQERSQQIGRIHTAVQEVNAIFHQLGSL 220
Query: 116 ISDGGDIESNLDENLTHTSRN--QSHPEVEKFEQLMKDANE 154
+ + G+ + +DEN++H N ++ ++ + +Q +D N+
Sbjct: 221 VKEQGEQVTTIDENISHLHDNMQNANKQLTRADQHQRDRNK 261
>STI1_SCHPO (Q9USI5) Heat shock protein sti1 homolog
Length = 591
Score = 30.0 bits (66), Expect = 9.7
Identities = 21/93 (22%), Positives = 40/93 (42%), Gaps = 15/93 (16%)
Query: 146 EQLMKDANEELYSGCKKFSKLSFVLHLYHIKRLFK---------------WTNESFDALL 190
E L K A++E G + + K +F + + K+ + + + D +
Sbjct: 259 EALKKKADQEKQIGNENYKKRNFPVAIEQYKKAWDTYKDITYLNNLAAAYFEADQLDDCI 318
Query: 191 GLLKDALPEGEKLPSSHYETKKIVGRLGLKYEK 223
+DA+ +G +L + K +GRLG Y+K
Sbjct: 319 KTCEDAIEQGRELRADFKLIAKALGRLGTTYQK 351
>NKCR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer
cells cyclophilin-related protein) (NK-TR protein)
Length = 1462
Score = 30.0 bits (66), Expect = 9.7
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Query: 83 EETNCREEAFRGDDMVGLIHDAFEGFNQSMGNNISDG----------------GDIESNL 126
E T+ ++E RG++ + +++ N+SD D ESN
Sbjct: 832 ERTHNKQEKNRGEEKSKSERECPHSKKRTLKENLSDHLRNGSKPKRKNYAGSKWDSESNS 891
Query: 127 DENLTHTSRNQSHPEVEKFE-QLMKDANEEL 156
+ ++T S+N SHP +K E + D+ E+
Sbjct: 892 ERDVTKNSKNDSHPSSDKEEGEATSDSESEV 922
>KOB1_ECOLI (Q52313) Transcriptional repressor protein korB
Length = 349
Score = 30.0 bits (66), Expect = 9.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 302 RHPADSEAWKKFDDQHQEFAKDSRNVRLGLASDG 335
R PA+ AW K++D QEF D V+L +G
Sbjct: 316 RPPAEGWAWLKYEDDGQEFEADLGTVQLVALLEG 349
>CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)
Length = 2441
Score = 30.0 bits (66), Expect = 9.7
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 74 ESINVLNRKEETNCREEAFRGDDMVGLIHDAFEGFNQSMGNNISDGGDIESNLDENLTHT 133
ESI L ++EE +EE+ + EG S G+ S ++N N +
Sbjct: 1552 ESIKELEQEEEERKKEESTAASETP-------EG---SQGD--SKNAKKKNNKKTNKNKS 1599
Query: 134 SRNQSHPEVEKFEQLMKDANEELYSGCKKFSKLSFVLHLY 173
S ++++ + + D +++LY+ +K ++ FV+HL+
Sbjct: 1600 SISRANKKKPSMPNVSNDLSQKLYATMEKHKEVFFVIHLH 1639
>BUD3_YEAST (P25558) Bud site selection protein BUD3
Length = 1636
Score = 30.0 bits (66), Expect = 9.7
Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 34/182 (18%)
Query: 105 FEGFNQSMGNNISDGGDIESNLDENLTHTSRNQSHPEVEKFEQLMKDANEELYSGCKKFS 164
F N SM ++ + NL +NL H HP ++ + N +L SG F
Sbjct: 718 FSSLNSSMAKDLLC---VNENLIKNLEHQLEEVKHPSTDEH----RAVNSKL-SGASDFD 769
Query: 165 KLSFVLHLYHIKRLFKWTNESFDALLGLLKDALPEGEKLPSSHYETKKIVGRLGLKYEKI 224
H K+ T +F + LKD+ P G+ + ETK+I L +K K
Sbjct: 770 AT-------HEKKRSYGTITTFRSYTSDLKDS-PSGDN-SNVTKETKEI---LPVKPTK- 816
Query: 225 HACPNDCMLFRNELADKNVNKCIKCGASRWKNDEKKVPAKVLRYFPLKSRLQRLFMSSET 284
++ + + K K AS+ ++ EKK P K +F + L+ +F S
Sbjct: 817 ----------KSSKKPREIQKKTKTNASKAEHIEKKKPNKGKGFFGV---LKNVFGSKSK 863
Query: 285 SR 286
S+
Sbjct: 864 SK 865
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.136 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,991,657
Number of Sequences: 164201
Number of extensions: 2065538
Number of successful extensions: 4903
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4901
Number of HSP's gapped (non-prelim): 13
length of query: 368
length of database: 59,974,054
effective HSP length: 112
effective length of query: 256
effective length of database: 41,583,542
effective search space: 10645386752
effective search space used: 10645386752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0121b.8