BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0121b.6
         (378 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YHJ1_YEAST (P38766) Hypothetical helicase in SLT2-PUT2 intergeni...    43  0.002
PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1, m...    40  0.010
PIF1_YEAST (P07271) DNA repair and recombination protein PIF1, m...    40  0.013
EX5A_ECOLI (P04993) Exodeoxyribonuclease V alpha chain (EC 3.1.1...    37  0.082
OPSP_PETMA (O42490) Pineal opsin (P-opsin) (Pineal gland-specifi...    32  2.0
DYHC_ASHGO (Q9C1M7) Dynein heavy chain, cytosolic (DYHC)               32  2.0
EX5A_BUCAI (P57530) Exodeoxyribonuclease V alpha chain (EC 3.1.1...    31  4.5
DYHC_YEAST (P36022) Dynein heavy chain, cytosolic (DYHC)               31  4.5
OPSB_CHICK (P28682) Blue-sensitive opsin (Blue cone photorecepto...    31  5.9
YF19_METJA (Q58914) Hypothetical protein MJ1519                        30  7.7

>YHJ1_YEAST (P38766) Hypothetical helicase in SLT2-PUT2 intergenic
           region
          Length = 723

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 29/77 (37%), Positives = 48/77 (61%), Gaps = 7/77 (9%)

Query: 277 RNTMGETTFIPRMSLTPSN--ADIPFK---FQRRQFPVILCFAMTINKSQGQSSTHVGLY 331
           R T+G+  +I  + + P     DIP +    +R Q P++LC+A++I+K+QGQ+   + + 
Sbjct: 615 RWTVGKNKYIHEL-MVPERFPIDIPRENVGLERTQIPLMLCWALSIHKAQGQTIQRLKVD 673

Query: 332 LPRPVFTHVQLYVALSR 348
           L R +F   Q+YVALSR
Sbjct: 674 L-RRIFEAGQVYVALSR 689


>PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1,
           mitochondrial precursor
          Length = 805

 Score = 40.0 bits (92), Expect = 0.010
 Identities = 23/49 (46%), Positives = 33/49 (66%), Gaps = 1/49 (2%)

Query: 304 RRQFPVILCFAMTINKSQGQSSTHVGLYLPRPVFTHVQLYVALSRVKSR 352
           R Q P+IL +A++I+K+QGQ+   V + L R VF   Q YVALSR  ++
Sbjct: 708 RSQIPLILAYAISIHKAQGQTLDRVKVDLGR-VFEKGQAYVALSRATTQ 755


>PIF1_YEAST (P07271) DNA repair and recombination protein PIF1,
           mitochondrial precursor
          Length = 857

 Score = 39.7 bits (91), Expect = 0.013
 Identities = 24/49 (48%), Positives = 33/49 (66%), Gaps = 1/49 (2%)

Query: 304 RRQFPVILCFAMTINKSQGQSSTHVGLYLPRPVFTHVQLYVALSRVKSR 352
           R Q P++L ++++I+KSQGQ+   V + L R VF   Q YVALSR  SR
Sbjct: 691 RVQLPLMLAWSLSIHKSQGQTLPKVKVDL-RRVFEKGQAYVALSRAVSR 738


>EX5A_ECOLI (P04993) Exodeoxyribonuclease V alpha chain (EC
           3.1.11.5) (Exodeoxyribonuclease V 67 kDa polypeptide)
          Length = 608

 Score = 37.0 bits (84), Expect = 0.082
 Identities = 36/117 (30%), Positives = 51/117 (42%), Gaps = 22/117 (18%)

Query: 239 GVPIMLIRNIDQTAGLCNGTRMIVNALTKYIIVAIVLNRNTMGETTFIPRMSLTPSNADI 298
           G P+M+ RN D   GL NG             + I L+R   G+ T   R+     + +I
Sbjct: 479 GRPVMIARN-DSALGLFNGD------------IGIALDR---GQGT---RVWFAMPDGNI 519

Query: 299 PFKFQRRQFPVILCFAMTINKSQGQSSTHVGLYLP---RPVFTHVQLYVALSRVKSR 352
                 R       +AMT++KSQG    H  L LP    PV T   +Y A++R + R
Sbjct: 520 KSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRR 576


>OPSP_PETMA (O42490) Pineal opsin (P-opsin) (Pineal gland-specific
           opsin)
          Length = 444

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 128 HSFRFLLIFIEPCKDPLLEIVNFSYPKLLFNLEKNSFFQERAILAPTLESVEEINNFMLA 187
           H   F+L+F   C    L ++ FSY KL+  L+K S  Q    L  T  + +++   ++ 
Sbjct: 207 HDHTFILMFFSTCFIFPLAVIFFSYGKLIQKLKKASETQRG--LESTRRAEQQVTRMVVV 264

Query: 188 MIL 190
           MIL
Sbjct: 265 MIL 267


>DYHC_ASHGO (Q9C1M7) Dynein heavy chain, cytosolic (DYHC)
          Length = 4083

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 17/74 (22%), Positives = 40/74 (53%), Gaps = 7/74 (9%)

Query: 259  RMIVNALTKYIIVAIVLNRNTMGETTFIPRMSLTPSNADIPFKFQRRQFPVILCFAMTIN 318
            +M++   T+   + ++++ + + ET+F+ RM+   +N+D+P  F+  ++  +L       
Sbjct: 2795 QMLLRCGTESEKICLIIDESNILETSFLERMNTLLANSDVPGLFEADEYEALL------- 2847

Query: 319  KSQGQSSTHVGLYL 332
               GQ  + +GL L
Sbjct: 2848 SKIGQRISQLGLLL 2861


>EX5A_BUCAI (P57530) Exodeoxyribonuclease V alpha chain (EC
           3.1.11.5)
          Length = 602

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 21/114 (18%)

Query: 238 VGVPIMLIRNIDQTAGLCNGTRMIVNALTKYIIVAIVLNRNTMGETTFIPRMSLTPSNAD 297
           +G PIM+I N ++   + NG   I N           +N+N + + +F+   + T +N  
Sbjct: 480 IGKPIMIINN-NRALNVSNGNIGITN-----------INKNGILQVSFLKENN-TINN-- 524

Query: 298 IPFKFQRRQFPVILCFAMTINKSQGQSSTHVGLYLPR---PVFTHVQLYVALSR 348
           IP K  R        +A+T++KSQG    +  L LP     +     LY  ++R
Sbjct: 525 IPVKILRNYKTA---WAITVHKSQGSEFMNTALILPNFNSHILNKDTLYTGITR 575


>DYHC_YEAST (P36022) Dynein heavy chain, cytosolic (DYHC)
          Length = 4092

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 13/39 (33%), Positives = 25/39 (63%)

Query: 273  IVLNRNTMGETTFIPRMSLTPSNADIPFKFQRRQFPVIL 311
            ++++ + + ET F+ RM+   +NADIP  FQ  ++  +L
Sbjct: 2815 LIIDESNILETAFLERMNTLLANADIPDLFQGEEYDKLL 2853


>OPSB_CHICK (P28682) Blue-sensitive opsin (Blue cone photoreceptor
           pigment)
          Length = 361

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 128 HSFRFLLIFIEPCKDPLLEIVNFSYPKLLFNLEKNSFFQERAILAPTLESVEEINNFMLA 187
           H+  ++L     C    L I+ FSY +LL  L   +  QE++  A T ++  E+   ++ 
Sbjct: 206 HNESYVLFLFTFCFGVPLAIIVFSYGRLLITLRAVARQQEQS--ATTQKADREVTKMVVV 263

Query: 188 MILGEEIEYLNCDTP 202
           M+LG    +L C  P
Sbjct: 264 MVLG----FLVCWAP 274


>YF19_METJA (Q58914) Hypothetical protein MJ1519
          Length = 1175

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 17/43 (39%), Positives = 26/43 (59%), Gaps = 3/43 (6%)

Query: 313  FAMTINKSQGQSSTHVGLYLPRPVFTHV---QLYVALSRVKSR 352
            +A+TI+KSQG    +V L +P+ +   V    LY A++R K R
Sbjct: 961  YAITIHKSQGSGFENVILIIPKGLNKFVSKEMLYTAITRAKKR 1003


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.343    0.151    0.491 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,731,139
Number of Sequences: 164201
Number of extensions: 1414111
Number of successful extensions: 5323
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5315
Number of HSP's gapped (non-prelim): 12
length of query: 378
length of database: 59,974,054
effective HSP length: 112
effective length of query: 266
effective length of database: 41,583,542
effective search space: 11061222172
effective search space used: 11061222172
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 67 (30.4 bits)