BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0118a.3
         (328 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CTSL_MOUSE (P58465) CTD small phosphatase-like protein (CTDSP-li...   143  5e-34
CTSL_HUMAN (O15194) CTD small phosphatase-like protein (CTDSP-li...   143  5e-34
CTSL_CHICK (Q9PTJ6) CTD small phosphatase-like protein (CTDSP-li...   141  3e-33
CTS1_HUMAN (Q9GZU7) Carboxy-terminal domain RNA polymerase II po...   135  1e-31
CTS1_MOUSE (P58466) Carboxy-terminal domain RNA polymerase II po...   135  1e-31
YA22_SCHPO (Q09695) Hypothetical protein C2F7.02c in chromosome I     133  5e-31
CTS2_MOUSE (Q8BX07) Carboxy-terminal domain RNA polymerase II po...   130  6e-30
CTS2_HUMAN (O14595) Carboxy-terminal domain RNA polymerase II po...   129  1e-29
PSR2_YEAST (Q07949) Probable phosphatase PSR2 (EC 3.1.3.-) (Plas...   122  9e-28
PSR1_YEAST (Q07800) Phosphatase PSR1 (EC 3.1.3.-) (Plasma membra...   122  1e-27
YHG4_YEAST (P38757) Hypothetical 50.6 kDa protein in RPL14B-GPA1...    87  7e-17
FCP1_ENCCU (Q8SV03) RNA polymerase II subunit A C-terminal domai...    62  2e-09
FCP1_MOUSE (Q7TSG2) RNA polymerase II subunit A C-terminal domai...    49  2e-05
FCP1_SCHPO (Q9P376) RNA polymerase II subunit A C-terminal domai...    46  1e-04
FCP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domai...    46  1e-04
FCP1_YEAST (Q03254) RNA polymerase II subunit A C-terminal domai...    44  6e-04
HISX_BIFLO (Q8G4S9) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)       31  3.7
FXC1_HUMAN (Q12948) Forkhead box protein C1 (Forkhead-related pr...    31  3.7
YT37_MYCBO (P65531) Hypothetical protein Mb2937c                       31  4.9
YT13_MYCTU (P65530) Hypothetical protein Rv2913c/MT2981                31  4.9

>CTSL_MOUSE (P58465) CTD small phosphatase-like protein (CTDSP-like)
           (Small C-terminal domain phosphatase 3) (Nuclear LIM
           interactor-interacting factor 1) (NLI-interacting factor
           1) (NIF-like protein)
          Length = 276

 Score =  143 bits (361), Expect = 5e-34
 Identities = 81/180 (45%), Positives = 113/180 (62%), Gaps = 5/180 (2%)

Query: 139 PSPPLPLLPPSIS----HRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVK 194
           PSPP   L P ++     ++ V +DLDETLVHS+  P   + DF+V   IDG   + YV 
Sbjct: 88  PSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNA-DFIVPVEIDGTIHQVYVL 146

Query: 195 KRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVK 254
           KRP VDEFL+ +   FE V+FTA+L +YA  V D +DR  +   RL+R+SC    G  VK
Sbjct: 147 KRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVK 206

Query: 255 DLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDM 314
           DLS  GR+L +V+IVD++P S+   PENA+ ++ + DD+ D EL  L  FF+G+   DD+
Sbjct: 207 DLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSREDDV 266


>CTSL_HUMAN (O15194) CTD small phosphatase-like protein (CTDSP-like)
           (Small C-terminal domain phosphatase 3) (Small CTD
           phosphatase 3) (SCP3) (Nuclear LIM
           interactor-interacting factor 1) (NLI-interacting factor
           1) (NIF-like protein) (RBSP3) (YA22 protein
          Length = 276

 Score =  143 bits (361), Expect = 5e-34
 Identities = 81/180 (45%), Positives = 113/180 (62%), Gaps = 5/180 (2%)

Query: 139 PSPPLPLLPPSIS----HRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVK 194
           PSPP   L P ++     ++ V +DLDETLVHS+  P   + DF+V   IDG   + YV 
Sbjct: 88  PSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNA-DFIVPVEIDGTIHQVYVL 146

Query: 195 KRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVK 254
           KRP VDEFL+ +   FE V+FTA+L +YA  V D +DR  +   RL+R+SC    G  VK
Sbjct: 147 KRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVK 206

Query: 255 DLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDM 314
           DLS  GR+L +V+IVD++P S+   PENA+ ++ + DD+ D EL  L  FF+G+   DD+
Sbjct: 207 DLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSREDDV 266


>CTSL_CHICK (Q9PTJ6) CTD small phosphatase-like protein (CTDSP-like)
           (Small C-terminal domain phosphatase 3) (Nuclear LIM
           interactor-interacting factor 1) (NLI-interacting factor
           1)
          Length = 275

 Score =  141 bits (355), Expect = 3e-33
 Identities = 81/174 (46%), Positives = 110/174 (62%), Gaps = 5/174 (2%)

Query: 139 PSPP----LPLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVK 194
           PSPP    LP L  S   ++ V +DLDETLVHS+  P   + DF+V   IDG   + YV 
Sbjct: 87  PSPPAKYLLPELTASDYGKKCVVIDLDETLVHSSFKPISNA-DFIVPVEIDGTIHQVYVL 145

Query: 195 KRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVK 254
           KRP VDEFL+ +   FE V+FTA+L +YA  V D +DR  +   RL+R+SC    G  VK
Sbjct: 146 KRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVK 205

Query: 255 DLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGV 308
           DLS  GR+L +V+IVD++P S+   PENA+ ++ + DD+ D EL  L  FF+G+
Sbjct: 206 DLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGL 259


>CTS1_HUMAN (Q9GZU7) Carboxy-terminal domain RNA polymerase II
           polypeptide A small phosphatase 1 (EC 3.1.3.16) (Nuclear
           LIM interactor-interacting factor 3) (NLI-interacting
           factor 3) (NLI-IF)
          Length = 261

 Score =  135 bits (341), Expect = 1e-31
 Identities = 80/195 (41%), Positives = 115/195 (58%), Gaps = 5/195 (2%)

Query: 130 LVFDGGDNDPSPPLPLLPPSI----SHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVID 185
           LV + G      P+  L P      S +  V +DLDETLVHS+  P   + DF++   ID
Sbjct: 63  LVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNA-DFIIPVEID 121

Query: 186 GVPMEFYVKKRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSC 245
           GV  + YV KRP VDEFL+ +   FE V+FTA+L +YA  V D +D+      RL+R+SC
Sbjct: 122 GVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESC 181

Query: 246 KQEDGKLVKDLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFF 305
               G  VKDLS  GRDL+RV+I+D++P S+   P+NA+ +  + D++ D EL  L  FF
Sbjct: 182 VFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFF 241

Query: 306 DGVDCCDDMRDAVKQ 320
           + +   DD+   ++Q
Sbjct: 242 EQLSRVDDVYSVLRQ 256


>CTS1_MOUSE (P58466) Carboxy-terminal domain RNA polymerase II
           polypeptide A small phosphatase 1 (EC 3.1.3.16) (Nuclear
           LIM interactor-interacting factor 3) (NLI-interacting
           factor 3) (Golli-interacting protein) (GIP)
          Length = 261

 Score =  135 bits (340), Expect = 1e-31
 Identities = 76/178 (42%), Positives = 109/178 (60%), Gaps = 1/178 (0%)

Query: 143 LPLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEF 202
           LP      S +  V +DLDETLVHS+  P   + DF++   IDGV  + YV KRP VDEF
Sbjct: 80  LPEAKAQDSDKICVVIDLDETLVHSSFKPVNNA-DFIIPVEIDGVVHQVYVLKRPHVDEF 138

Query: 203 LEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSLAGRD 262
           L+ +   FE V+FTA+L +YA  V D +D+      RL+R+SC    G  VKDLS  GRD
Sbjct: 139 LQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRD 198

Query: 263 LKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDMRDAVKQ 320
           L+RV+I+D++P S+   P+NA+ +  + D++ D EL  L  FF+ +   DD+   ++Q
Sbjct: 199 LRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQ 256


>YA22_SCHPO (Q09695) Hypothetical protein C2F7.02c in chromosome I
          Length = 325

 Score =  133 bits (335), Expect = 5e-31
 Identities = 77/179 (43%), Positives = 110/179 (61%), Gaps = 14/179 (7%)

Query: 141 PPLP----------LLPPSISH---RRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGV 187
           PPLP          LLPP       ++ + LDLDETLVHS+     E  DFVV   IDG+
Sbjct: 132 PPLPEVKRYGEGNWLLPPIAKEDEGKKCLILDLDETLVHSSFKYI-EPADFVVSIEIDGL 190

Query: 188 PMEFYVKKRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQ 247
             +  V KRPGVDEFL+ +   FE+VVFTA+L +YA  VLD +D + ++ HRL+R++C  
Sbjct: 191 QHDVRVVKRPGVDEFLKKMGDMFEIVVFTASLAKYADPVLDMLDHSHVIRHRLFREACCN 250

Query: 248 EDGKLVKDLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFD 306
            +G  VKDLS  GR+L+  +I+D++P+S+   P +A+ I  + +D+ D EL  L  F +
Sbjct: 251 YEGNFVKDLSQLGRNLEDSIIIDNSPSSYIFHPSHAVPISSWFNDMHDMELIDLIPFLE 309


>CTS2_MOUSE (Q8BX07) Carboxy-terminal domain RNA polymerase II
           polypeptide A small phosphatase 2 (EC 3.1.3.16)
          Length = 270

 Score =  130 bits (326), Expect = 6e-30
 Identities = 75/178 (42%), Positives = 107/178 (59%), Gaps = 1/178 (0%)

Query: 143 LPLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEF 202
           LP +      R  V +DLDETLVHS+  P   + DF+V   I+G   + YV KRP VDEF
Sbjct: 90  LPEVTEQDQGRICVVIDLDETLVHSSFKPINNA-DFIVPVEIEGTTHQVYVLKRPYVDEF 148

Query: 203 LEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSLAGRD 262
           L  +   FE V+FTA+L +YA  V D +DR  +   RL+R++C    G  VKDLS  GRD
Sbjct: 149 LRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFREACVFHQGCYVKDLSRLGRD 208

Query: 263 LKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDMRDAVKQ 320
           L++ VI+D++P S+   PENA+ ++ + DD+ D EL  L   F+ +   DD+  ++ Q
Sbjct: 209 LRKTVILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPVFEELSGTDDVYTSLGQ 266


>CTS2_HUMAN (O14595) Carboxy-terminal domain RNA polymerase II
           polypeptide A small phosphatase 2 (EC 3.1.3.16) (Small
           CTD phosphatase 2) (SCP2) (Nuclear LIM
           interactor-interacting factor 2) (NLI-interacting factor
           2) (Protein OS-4)
          Length = 271

 Score =  129 bits (323), Expect = 1e-29
 Identities = 74/178 (41%), Positives = 107/178 (59%), Gaps = 1/178 (0%)

Query: 143 LPLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEF 202
           LP +      R  V +DLDETLVHS+  P   + DF+V   I+G   + YV KRP VDEF
Sbjct: 91  LPEVTEEDQGRICVVIDLDETLVHSSFKPINNA-DFIVPIEIEGTTHQVYVLKRPYVDEF 149

Query: 203 LEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSLAGRD 262
           L  +   FE V+FTA+L +YA  V D +DR  +   RL+R+SC    G  VKDLS  GRD
Sbjct: 150 LRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRD 209

Query: 263 LKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDMRDAVKQ 320
           L++ +I+D++P S+   PENA+ ++ + DD+ D EL  L   F+ +   +D+  ++ Q
Sbjct: 210 LRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFEELSGAEDVYTSLGQ 267


>PSR2_YEAST (Q07949) Probable phosphatase PSR2 (EC 3.1.3.-) (Plasma
           membrane sodium response protein 2)
          Length = 397

 Score =  122 bits (307), Expect = 9e-28
 Identities = 67/157 (42%), Positives = 97/157 (61%), Gaps = 4/157 (2%)

Query: 145 LLPPSISH---RRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDE 201
           LLPP +     ++ + LDLDETLVHS+      S DFV+   ID      YV KRPGVDE
Sbjct: 216 LLPPKLQEFQQKKCLILDLDETLVHSSFKYM-HSADFVLPVEIDDQVHNVYVIKRPGVDE 274

Query: 202 FLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSLAGR 261
           FL  ++  +EVVVFTA++  YA+ +LD +D N  + HRL+R++C   +G  +K+LS  GR
Sbjct: 275 FLNRVSQLYEVVVFTASVSRYANPLLDTLDPNGTIHHRLFREACYNYEGNYIKNLSQIGR 334

Query: 262 DLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDREL 298
            L   +I+D++P S+   P++A+ I  +  D  D EL
Sbjct: 335 PLSETIILDNSPASYIFHPQHAVPISSWFSDTHDNEL 371


>PSR1_YEAST (Q07800) Phosphatase PSR1 (EC 3.1.3.-) (Plasma membrane
           sodium response protein 1)
          Length = 427

 Score =  122 bits (306), Expect = 1e-27
 Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 4/157 (2%)

Query: 145 LLPP---SISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDE 201
           LLPP   S   ++ + LDLDETLVHS+      S DFV+   ID      YV KRPGV+E
Sbjct: 246 LLPPQDESTKGKKCLILDLDETLVHSSFKYL-RSADFVLSVEIDDQVHNVYVIKRPGVEE 304

Query: 202 FLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSLAGR 261
           FLE +   FEVVVFTA++  Y   +LD +D ++++ HRL+R++C   +G  +K+LS  GR
Sbjct: 305 FLERVGKLFEVVVFTASVSRYGDPLLDILDTDKVIHHRLFREACYNYEGNYIKNLSQIGR 364

Query: 262 DLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDREL 298
            L  ++I+D++P S+   P++AI I  +  D  D EL
Sbjct: 365 PLSDIIILDNSPASYIFHPQHAIPISSWFSDTHDNEL 401


>YHG4_YEAST (P38757) Hypothetical 50.6 kDa protein in RPL14B-GPA1
           intergenic region
          Length = 446

 Score = 86.7 bits (213), Expect = 7e-17
 Identities = 57/196 (29%), Positives = 103/196 (52%), Gaps = 21/196 (10%)

Query: 142 PLPLLPPSISH---RRTVFLDLDETLVHSNTAPPPESFD-----FVVRPVIDGVPMEFYV 193
           P  L+P S+ +   ++ + +DLDETL+HS +     S         V+  + G+   +++
Sbjct: 237 PKKLIPKSVLNTQKKKKLVIDLDETLIHSASRSTTHSNSSQGHLVEVKFGLSGIRTLYFI 296

Query: 194 KKRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRN--RLVSHRLYRDSCKQEDG- 250
            KRP  D FL  ++  +++++FTA+++EYA  V+D ++ +     S R YR  C   DG 
Sbjct: 297 HKRPYCDLFLTKVSKWYDLIIFTASMKEYADPVIDWLESSFPSSFSKRYYRSDCVLRDGV 356

Query: 251 KLVKDLSL----------AGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWK 300
             +KDLS+          +   L  V+I+D++P S+A   +NAI +  ++ D  D +L  
Sbjct: 357 GYIKDLSIVKDSEENGKGSSSSLDDVIIIDNSPVSYAMNVDNAIQVEGWISDPTDTDLLN 416

Query: 301 LRMFFDGVDCCDDMRD 316
           L  F + +    D+R+
Sbjct: 417 LLPFLEAMRYSTDVRN 432


>FCP1_ENCCU (Q8SV03) RNA polymerase II subunit A C-terminal domain
           phosphatase (EC 3.1.3.16) (CTD phosphatase FCP1)
          Length = 411

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 24/161 (14%)

Query: 158 LDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEFLEALAAKFEVVVFTA 217
           LDLD+T++H  T     S +  V+ VID     + VK RP +D  L  ++  +E+ V+T 
Sbjct: 65  LDLDQTVLH--TTYGTSSLEGTVKFVIDRC--RYCVKLRPNLDYMLRRISKLYEIHVYTM 120

Query: 218 ALREYASLVLDRVD-RNRLVSHRLY-RDSCKQEDGKLVKDLS-LAGRDLKRVVIVDDNPN 274
             R YA  +++ +D   +    R+  RD   +  G LVK LS L   D + +VI+DD P+
Sbjct: 121 GTRAYAERIVEIIDPSGKYFDDRIITRD---ENQGVLVKRLSRLFPHDHRNIVILDDRPD 177

Query: 275 SFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDMR 315
            + +  EN +LIRPF         W    +F+ VD  D +R
Sbjct: 178 VW-DYCENLVLIRPF---------W----YFNRVDINDPLR 204


>FCP1_MOUSE (Q7TSG2) RNA polymerase II subunit A C-terminal domain
           phosphatase (EC 3.1.3.16) (TFIIF-associating CTD
           phosphatase)
          Length = 960

 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 12/147 (8%)

Query: 151 SHRRTVFLDLDETLVHSNTAPPPES-----FDFVVRPVIDGVPMEFYVKKRPGVDEFLEA 205
           + +  + +DLD+TL+H+     P+      F F +     G PM  + + RP   +FLE 
Sbjct: 180 NRKLVLMVDLDQTLIHTTEQHCPQMSNKGIFHFQLGR---GEPM-LHTRLRPHCKDFLEK 235

Query: 206 LAAKFEVVVFTAALREYASLVLDRVD-RNRLVSHR-LYRDSCKQEDGKLVKDLSLAGRDL 263
           +A  +E+ VFT   R YA  +   +D   +L SHR L RD C     K     +L     
Sbjct: 236 IAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGD 295

Query: 264 KRVVIVDDNPNSFANQPENAILIRPFV 290
             V I+DD  + +   P N I ++ +V
Sbjct: 296 SMVCIIDDREDVWKFAP-NLITVKKYV 321


>FCP1_SCHPO (Q9P376) RNA polymerase II subunit A C-terminal domain
           phosphatase (EC 3.1.3.16) (CTD phosphatase fcp1)
          Length = 723

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 33/161 (20%)

Query: 153 RRTVFLDLDETLVHSNTAPP-------PESFDF-VVRPVID--------GVPMEFYVKKR 196
           R ++ +DLD+T++H+   P        P + ++ V+R V          G    +Y+K R
Sbjct: 164 RLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFR 223

Query: 197 PGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDL 256
           PG+ +FL+ ++  +E+ ++T   + YA  V   +D     + +L++D     D       
Sbjct: 224 PGLAQFLQKISELYELHIYTMGTKAYAKEVAKIID----PTGKLFQDRVLSRD----DSG 275

Query: 257 SLAGRDLKR--------VVIVDDNPNSFANQPENAILIRPF 289
           SLA + L+R        VV++DD  + +   P N I + P+
Sbjct: 276 SLAQKSLRRLFPCDTSMVVVIDDRGDVWDWNP-NLIKVVPY 315


>FCP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain
           phosphatase (EC 3.1.3.16) (TFIIF-associating CTD
           phosphatase)
          Length = 961

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 151 SHRRTVFLDLDETLVHSNTAPPPES-----FDFVVRPVIDGVPMEFYVKKRPGVDEFLEA 205
           + +  + +DLD+TL+H+      +      F F +     G PM  + + RP   +FLE 
Sbjct: 180 NRKLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGR---GEPM-LHTRLRPHCKDFLEK 235

Query: 206 LAAKFEVVVFTAALREYASLVLDRVD-RNRLVSHR-LYRDSCKQEDGKLVKDLSLAGRDL 263
           +A  +E+ VFT   R YA  +   +D   +L SHR L RD C     K     +L     
Sbjct: 236 IAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGD 295

Query: 264 KRVVIVDDNPNSFANQPENAILIRPFV 290
             V I+DD  + +   P N I ++ +V
Sbjct: 296 SMVCIIDDREDVWKFAP-NLITVKKYV 321


>FCP1_YEAST (Q03254) RNA polymerase II subunit A C-terminal domain
           phosphatase (EC 3.1.3.16) (CTD phosphatase FCP1)
          Length = 732

 Score = 43.9 bits (102), Expect = 6e-04
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 7/102 (6%)

Query: 191 FYVKKRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVD-RNRLVSHRLYRDSCKQED 249
           +YVK RPG+ EF   +A  FE+ ++T A R YA  +   VD    L   R+     + E+
Sbjct: 245 YYVKVRPGLKEFFAKVAPLFEMHIYTMATRAYALQIAKIVDPTGELFGDRIL---SRDEN 301

Query: 250 GKL-VKDLS-LAGRDLKRVVIVDDNPNSFANQPENAILIRPF 289
           G L  K L+ L   D   VV++DD  + + N   N I + P+
Sbjct: 302 GSLTTKSLAKLFPTDQSMVVVIDDRGDVW-NWCPNLIKVVPY 342


>HISX_BIFLO (Q8G4S9) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)
          Length = 471

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 252 LVKDLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVD 309
           +++ + L G++L R  ++   P +     E   L+RP +DDV +R    LR F +  D
Sbjct: 11  IMRIIDLRGQNLSRAELLAAMPRAAMGTSEATDLVRPILDDVKERGAAALRDFEEKFD 68


>FXC1_HUMAN (Q12948) Forkhead box protein C1 (Forkhead-related
           protein FKHL7) (Forkhead-related transcription factor 3)
           (FREAC-3)
          Length = 553

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 26/94 (27%), Positives = 35/94 (36%), Gaps = 11/94 (11%)

Query: 55  PTKSIKDIRRNNNRRWRRKTPIKNAVAASSAVLASIHRRITKFFSKLARLSPDRKRASYK 114
           P   I+DI+  N        P+  A A  S   A++ +            SPD   +S  
Sbjct: 219 PPVRIQDIKTENGTCPSPPQPLSPAAALGSGSAAAVPKIE----------SPDSSSSSLS 268

Query: 115 ILKKTSPQDDSICRTLVFDGGDNDPSPPLPLLPP 148
               + P      R L  DG D+ P PP P  PP
Sbjct: 269 S-GSSPPGSLPSARPLSLDGADSAPPPPAPSAPP 301


>YT37_MYCBO (P65531) Hypothetical protein Mb2937c
          Length = 611

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 21/120 (17%)

Query: 187 VPMEFYVKKRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCK 246
           VP E Y     G+D     L    E    TAAL      + D++ RN L++ R YR S +
Sbjct: 326 VPFELY---SDGID-----LPVFEEFGAGTAALH-----LRDQLQRNELLADRSYRRSFR 372

Query: 247 QEDGKLVKDLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFD 306
           +E  ++    SL  RD    VIV+         P+ +++ + F     +R L  L  F D
Sbjct: 373 REFDRIKLGPSLWHRDFHDAVIVE--------CPDKSLIGKSFGAIADERGLHPLDAFLD 424


>YT13_MYCTU (P65530) Hypothetical protein Rv2913c/MT2981
          Length = 611

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 21/120 (17%)

Query: 187 VPMEFYVKKRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCK 246
           VP E Y     G+D     L    E    TAAL      + D++ RN L++ R YR S +
Sbjct: 326 VPFELY---SDGID-----LPVFEEFGAGTAALH-----LRDQLQRNELLADRSYRRSFR 372

Query: 247 QEDGKLVKDLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFD 306
           +E  ++    SL  RD    VIV+         P+ +++ + F     +R L  L  F D
Sbjct: 373 REFDRIKLGPSLWHRDFHDAVIVE--------CPDKSLIGKSFGAIADERGLHPLDAFLD 424


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.323    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,510,555
Number of Sequences: 164201
Number of extensions: 1678902
Number of successful extensions: 4064
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4027
Number of HSP's gapped (non-prelim): 28
length of query: 328
length of database: 59,974,054
effective HSP length: 110
effective length of query: 218
effective length of database: 41,911,944
effective search space: 9136803792
effective search space used: 9136803792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)