BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0117b.7
(281 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DRPL_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atr... 36 0.12
P100_HCMVA (P08318) Large structural phosphoprotein (pp150) (150... 35 0.27
YS89_CAEEL (Q09624) Hypothetical protein ZK945.9 in chromosome II 34 0.46
PRD2_HUMAN (Q13029) PR-domain zinc finger protein 2 (Retinoblast... 33 0.60
FLIK_SALTY (P26416) Flagellar hook-length control protein 33 0.78
ZRC1_YEAST (P20107) Zinc/cadmium resistance protein 33 1.0
RBP2_PLAVB (Q00799) Reticulocyte binding protein 2 precursor (Pv... 33 1.0
ASX_DROME (Q9V727) Polycomb protein Asx (Additional sex combs) 32 1.3
PODX_RABIT (Q28645) Podocalyxin-like protein 1 precursor 32 1.7
MYH3_HUMAN (P11055) Myosin heavy chain, fast skeletal muscle, em... 32 1.7
SPEN_DROME (Q8SX83) Split ends protein 32 2.3
RR44_CAEEL (Q17632) Probable exosome complex exonuclease RRP44 (... 32 2.3
MYH3_RAT (P12847) Myosin heavy chain, fast skeletal muscle, embr... 32 2.3
YS19_CAEEL (Q09651) Hypothetical protein ZK1307.9 in chromosome III 31 3.0
VGP_MABVP (P35254) Structural glycoprotein precursor (Virion spi... 31 3.9
STF_LAMBD (P03764) Side tail fiber protein 31 3.9
INCE_HUMAN (Q9NQS7) Inner centromere protein 31 3.9
DRPL_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrop... 31 3.9
AMYH_YEAST (P08640) Glucoamylase S1/S2 precursor (EC 3.2.1.3) (G... 31 3.9
SOJO_XENLA (Q9PW73) Cytoskeletal protein Sojo (p170) 30 5.0
>DRPL_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian
atrophy protein)
Length = 1185
Score = 35.8 bits (81), Expect = 0.12
Identities = 28/109 (25%), Positives = 42/109 (37%), Gaps = 2/109 (1%)
Query: 2 DLPNRDKQPTVDVKKTASRDLQNDNKIMALTSVGSSSVLKDKDPDTDSNRISGTKRPLSD 61
DL + D + D + RD+ DN+ + + SV + D D+ S G RP
Sbjct: 104 DLDSLDGRSLNDDGSSDPRDIDQDNRSTSPSIYSPGSV--ENDSDSSSGLSQGPARPYHP 161
Query: 62 YPVNHHLQQSPGNSTANGHLVYVRRKSEAELGKCAAFENPTNNAFCQPP 110
P+ Q P ++ + S G A E PT+ F PP
Sbjct: 162 PPLFPPSPQPPDSTPRQPEASFEPHPSVTPTGYHAPMEPPTSRMFQAPP 210
>P100_HCMVA (P08318) Large structural phosphoprotein (pp150) (150
kDa matrix phosphoprotein) (Basic phosphoprotein) (BPP)
Length = 1048
Score = 34.7 bits (78), Expect = 0.27
Identities = 46/205 (22%), Positives = 78/205 (37%), Gaps = 39/205 (19%)
Query: 4 PNRDKQPTVDVKKTASRDLQNDNKIMALTSVGSSSVLKDKDPDTDSNRISGT------KR 57
P R P V +TASRD ++ + AL + S ++D + + D + +G+
Sbjct: 676 PRRPSTPRAAVTQTASRDAADE--VWALRDQTAESPVEDSEEEDDDSSDTGSVVSLGHTT 733
Query: 58 PLSDYPVNHHLQQSPGNSTANGHLVYVRR-KSEAELGKCAAFENPT-NNAFCQPPRQLCS 115
P SDY N+ + P + +R+ K + + + + P P +
Sbjct: 734 PSSDY--NNDVISPPSQTPEQSTPSRIRKAKLSSPMTTTSTSQKPVLGKRVATPHASARA 791
Query: 116 EEETALPKPQLKEPNVSCFPAFAPFPL---------------------TSSISSSGRPSV 154
+ T+ P E VS P+ P L TSS SS+ +PS
Sbjct: 792 QTVTSTPVQGRLEKQVSGTPSTVPATLLQPQPASSKTTSSRNVTSGAGTSSASSARQPSA 851
Query: 155 PISCGKSTMKLAPVESNCVTTSSGP 179
S L+P E + V+ ++ P
Sbjct: 852 ------SASVLSPTEDDVVSPATSP 870
>YS89_CAEEL (Q09624) Hypothetical protein ZK945.9 in chromosome II
Length = 3178
Score = 33.9 bits (76), Expect = 0.46
Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 7/150 (4%)
Query: 31 LTSVGSSSVLKDKDPDTDSNRISGTKRPLSDYPVNHHLQQSPGNSTANGHLVYVRRKSEA 90
+TS SS+ L P T + I+ T L D + +L ++ ++T ++ E
Sbjct: 348 ITSSPSSTTLSTSIPTTTTPEITSTLSSLPDNAICSYLDETTTSTTFTTTMLTSTTTEEP 407
Query: 91 ELGKCAAFENPTNNAFC--QPPRQLCSEEETALPKPQLKEPNVSCFPAF-APFPLTSSIS 147
T++ +P L T+ EP+ S + P+TS+++
Sbjct: 408 STSTTTTEVTSTSSTVTTTEPTTTLT----TSTASTSTTEPSTSTVTTSPSTSPVTSTVT 463
Query: 148 SSGRPSVPISCGKSTMKLAPVESNCVTTSS 177
SS S ++ ST + S+ VTTS+
Sbjct: 464 SSSSSSTTVTTPTSTESTSTSPSSTVTTST 493
>PRD2_HUMAN (Q13029) PR-domain zinc finger protein 2 (Retinoblastoma
protein-interacting zinc-finger protein) (MTE-binding
protein) (MTB-ZF) (GATA-3 binding protein G3B)
Length = 1719
Score = 33.5 bits (75), Expect = 0.60
Identities = 21/80 (26%), Positives = 34/80 (42%)
Query: 100 NPTNNAFCQPPRQLCSEEETALPKPQLKEPNVSCFPAFAPFPLTSSISSSGRPSVPISCG 159
+P++ C P + + LP L P+ S P P PL+++ + S P + +
Sbjct: 970 DPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVS 1029
Query: 160 KSTMKLAPVESNCVTTSSGP 179
S + PVE S GP
Sbjct: 1030 PSPSPIPPVEPLMSAASPGP 1049
Score = 30.8 bits (68), Expect = 3.9
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 100 NPTNNAFCQPPRQLCSEEETALPKP-QLKEPNVSCFPAFAPFPLTSSISSSGRPSVPISC 158
+P +NA Q P + S + P P EP +S P +SS SSS S S
Sbjct: 1010 SPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSS 1069
Query: 159 GKSTMKLAPVESNCVTTSSGPTIGNPKGLIDMQWEE 194
S+ P+ + SSG + +I + EE
Sbjct: 1070 SSSSPSPPPLSAISSVVSSGDNLEASLPMISFKQEE 1105
>FLIK_SALTY (P26416) Flagellar hook-length control protein
Length = 405
Score = 33.1 bits (74), Expect = 0.78
Identities = 28/123 (22%), Positives = 53/123 (42%), Gaps = 20/123 (16%)
Query: 135 PAFAPFPLTSSISSS----GRPSVPISCGKSTMKLAPVESNCVTTSSGPTIGNPKGLIDM 190
PA P + ++ +S+ P P++ G + L+ + + +S P + P G
Sbjct: 212 PALTPLVVAAAATSAKVEVDSPPAPVTHGAAMPTLSSATAQPLPVASAPVLSAPLG--SH 269
Query: 191 QWEERYQQLQMLLRKLDQSDQVEYVQMLQSLSSVELSRHAVELEKRAIQLSLEEAK-ELQ 249
+W++ + Q ML + Q S +L H EL + I L L++ + +LQ
Sbjct: 270 EWQQTFSQQVMLFTR-------------QGQQSAQLRLHPEELGQVHISLKLDDNQAQLQ 316
Query: 250 RVA 252
V+
Sbjct: 317 MVS 319
>ZRC1_YEAST (P20107) Zinc/cadmium resistance protein
Length = 442
Score = 32.7 bits (73), Expect = 1.0
Identities = 22/74 (29%), Positives = 39/74 (51%), Gaps = 5/74 (6%)
Query: 22 LQNDNKIM---ALTSVGSSSVLKDKDPDTDSNRISGTKRPLSDYPVNHHLQQS--PGNST 76
L NDN + A++S G S + + P + NR+S +PL ++ + H +S PG+ +
Sbjct: 170 LPNDNLAIDEDAISSPGPSGQIGEVLPQSVVNRLSNESQPLLNHDDHDHSHESKKPGHRS 229
Query: 77 ANGHLVYVRRKSEA 90
N H V++ +A
Sbjct: 230 LNMHGVFLHVLGDA 243
>RBP2_PLAVB (Q00799) Reticulocyte binding protein 2 precursor
(PvRBP-2)
Length = 2867
Score = 32.7 bits (73), Expect = 1.0
Identities = 42/170 (24%), Positives = 63/170 (36%), Gaps = 27/170 (15%)
Query: 13 DVKKTASRDLQNDNKIMA----LTSVGSSSVLKDKDPDTDSNRISGTK--------RPLS 60
D ++ S L++++K + L G K D N+I+ R S
Sbjct: 23 DSNRSKSNSLKSESKSLPTYANLMRNGQDKYNNAKTEDNIGNQINNDNNHNGYNDNRINS 82
Query: 61 DYPVNHHLQQSPGNSTANGHLV--------YVRRKSEAELGKCAAFENPTNNAFCQPPRQ 112
+YP HLQ SP N H YV+R S + EN TNN P
Sbjct: 83 EYPKTSHLQHSPSLVHLNDHKFTTKPSRHSYVQRNSIYKRNTNNNMEN-TNNELHVVPNF 141
Query: 113 LCSEEETALPKPQLKEPNVSC------FPAFAPFPLTSSISSSGRPSVPI 156
E++ A KP ++ + F T++I S+ +P PI
Sbjct: 142 FIQEKKAAPQKPSVQNTPTATQIVYNNLDYLNAFDDTNNIISAFKPHHPI 191
>ASX_DROME (Q9V727) Polycomb protein Asx (Additional sex combs)
Length = 1669
Score = 32.3 bits (72), Expect = 1.3
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 135 PAFAPFPLTSSISSSGRPS--VPISCGKSTMKLAPVESNCVTTSSGPTIGNP 184
P +P P+ SSIS S S SC S+ A + S+C +++SG T P
Sbjct: 659 PEDSPLPIASSISGSTPASSITSTSCTSSSSSSASMSSSCSSSNSGSTTTAP 710
>PODX_RABIT (Q28645) Podocalyxin-like protein 1 precursor
Length = 551
Score = 32.0 bits (71), Expect = 1.7
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 30/170 (17%)
Query: 115 SEEETALPKPQLKEPNVSCFPAFAPFPLTSSISSSGRPSVPISCG-KSTMKLAPVESNCV 173
S E +P P P P+ +PFP + S S + +PS P + G + T P S+
Sbjct: 238 SAETQGMPSPMPPSP---ASPSSSPFPSSPSPSPALQPSGPSAAGTEDTTGRGPTSSSTE 294
Query: 174 TTSS---GPTIGNPKGLIDMQW-----EERYQQLQMLLRKLDQSDQVEYVQMLQSL--SS 223
S+ GP+ +P + Q ER + Q+L+ L +S +V QS
Sbjct: 295 LASTALHGPSTLSPTSAVRDQRVSCGPPERPTE-QLLILNLTRSSPCIHVFQRQSQGEGE 353
Query: 224 VELSRHAVELEKRAIQLSLEEAKELQRVAVLNVLGKSAKKFKAPADHDEC 273
E+S H+ + SL E K ++ +L ++AK PA D+C
Sbjct: 354 TEISMHSTD--------SLPEDK------LVTLLCRAAKPTFNPA-QDQC 388
>MYH3_HUMAN (P11055) Myosin heavy chain, fast skeletal muscle,
embryonic (Muscle embryonic myosin heavy chain) (SMHCE)
Length = 1940
Score = 32.0 bits (71), Expect = 1.7
Identities = 23/61 (37%), Positives = 38/61 (61%), Gaps = 6/61 (9%)
Query: 192 WEERYQQLQMLLRK---LDQ--SDQVEYV-QMLQSLSSVELSRHAVELEKRAIQLSLEEA 245
+EE QL+ + R+ L+Q +D E + + +++ +E SR +ELEK IQL+LEEA
Sbjct: 1489 YEEALDQLETVKRENKNLEQEIADLTEQIAENGKTIHELEKSRKQIELEKADIQLALEEA 1548
Query: 246 K 246
+
Sbjct: 1549 E 1549
>SPEN_DROME (Q8SX83) Split ends protein
Length = 5560
Score = 31.6 bits (70), Expect = 2.3
Identities = 27/109 (24%), Positives = 40/109 (35%), Gaps = 12/109 (11%)
Query: 48 DSNRISGTKRPLSDYPVNHHLQQSPGNSTANGHLVYVRRKSEAELGKCAAFENPTNNAFC 107
D +S KR DY +HH + G + H + + S L C +P N
Sbjct: 1074 DEGVVSPRKRIKMDYHHHHHHSNASGVESTGEH-SSINKPSPLLLSNCDVIHDPLNR--- 1129
Query: 108 QPPRQLCSEEETALPKPQLKEPNVSCFPAFAPFPLTSSISSSGRPSVPI 156
++ ET P +K FP P S + S RPS+ +
Sbjct: 1130 --KSEIRRVSETPSGSPSIK------FPGHLPSAPQSLMLSCRRPSIDV 1170
>RR44_CAEEL (Q17632) Probable exosome complex exonuclease RRP44 (EC
3.1.13.-) (Ribosomal RNA processing protein 44) (DIS3
protein homolog)
Length = 1029
Score = 31.6 bits (70), Expect = 2.3
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 160 KSTMKLAPVESNCVTTSSGPTIGNPKGLIDMQWEERYQQLQMLLRKLDQSDQVEYVQMLQ 219
+ MKL+ V + T + T+ + + DM WE R + M + LD VE +L
Sbjct: 623 RGLMKLSKVLNARRTGNGALTLASSEVRFDMDWESRTPKKVMEKQHLDTHSMVEEFMLLA 682
Query: 220 SLSSVE-----------LSRHAVELEK 235
++S E L RH V L++
Sbjct: 683 NISVAEKILEEYPDCALLRRHPVPLKE 709
>MYH3_RAT (P12847) Myosin heavy chain, fast skeletal muscle, embryonic
Length = 1940
Score = 31.6 bits (70), Expect = 2.3
Identities = 23/61 (37%), Positives = 38/61 (61%), Gaps = 6/61 (9%)
Query: 192 WEERYQQLQMLLRK---LDQ--SDQVEYV-QMLQSLSSVELSRHAVELEKRAIQLSLEEA 245
+EE QL+ + R+ L+Q +D E + + +S+ +E SR +ELEK IQ++LEEA
Sbjct: 1489 YEEALDQLETVKRENKNLEQEIADLTEQIAENGKSIHELEKSRKQMELEKADIQMALEEA 1548
Query: 246 K 246
+
Sbjct: 1549 E 1549
>YS19_CAEEL (Q09651) Hypothetical protein ZK1307.9 in chromosome III
Length = 369
Score = 31.2 bits (69), Expect = 3.0
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 49 SNRISGTKRPLSDYPVNHHLQQSPGNSTANGHLVYVRRKSEAELGKCAAFENPTNNAFCQ 108
S R+ T + D +N + G S+A L+ ++RKS + LG P N++
Sbjct: 282 SERLKATMKAERDKRINASFSTA-GTSSATQKLLGIKRKSASSLGVQIKKAAPENSSL-- 338
Query: 109 PPRQLCSEEETALPKPQLKEP 129
+EE A+ KP + P
Sbjct: 339 ------QDEEPAVEKPNISNP 353
>VGP_MABVP (P35254) Structural glycoprotein precursor (Virion spike
glycoprotein)
Length = 681
Score = 30.8 bits (68), Expect = 3.9
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 11 TVDVKKTASRDLQNDNKIMALTSVGSSSVLKDKDPDTDSNRISGTKRPLSDYP--VNHHL 68
+V ++ T + D Q+ TS S + L T + + TK P + P N HL
Sbjct: 355 SVSLQNTTNYDTQSTATENEQTSAPSKTTLPPTGNLTTAKSTNNTKGPTTTAPNMTNGHL 414
Query: 69 QQ-SPGNSTANGHLVYVRRK 87
SP + HLVY R+K
Sbjct: 415 TSPSPTPNPTTQHLVYFRKK 434
>STF_LAMBD (P03764) Side tail fiber protein
Length = 774
Score = 30.8 bits (68), Expect = 3.9
Identities = 34/124 (27%), Positives = 45/124 (35%), Gaps = 20/124 (16%)
Query: 30 ALTSVGSSSVLKDKDPD---TDSNRISGTKRPLSDYPVNHHLQQSPGNSTANGHLVYVRR 86
AL ++ + DPD T +N ++G + P N L G STA L Y
Sbjct: 440 ALNTLNELAAALGNDPDFATTMTNALAGKQ------PKNATLTALAGLSTAKNKLPYFAE 493
Query: 87 KSEAELGKCAAFENPTNNAFCQPPRQLCSEEETALPKPQLKEPNVSCFPAFAPFPLTSSI 146
A L + Q R + ++ A L S FPA AP P S I
Sbjct: 494 NDAASLTELT-----------QVGRDILAKNSVADVLEYLGAGENSAFPAGAPIPWPSDI 542
Query: 147 SSSG 150
SG
Sbjct: 543 VPSG 546
>INCE_HUMAN (Q9NQS7) Inner centromere protein
Length = 919
Score = 30.8 bits (68), Expect = 3.9
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 193 EERYQQLQMLLRKLDQSDQVEYVQMLQSLSSVELSRHAVELEKRAIQLSLEEAK---ELQ 249
E R Q+ + R+L + ++ + LQ+ ++ A+ L+K +Q LEE K E Q
Sbjct: 707 ERREQERREQERQLAEQERRREQERLQAERELQEREKALRLQKEQLQRELEEKKKKEEQQ 766
Query: 250 RVAVLNVLGKSAKKFKAPA 268
R+A + + KK K A
Sbjct: 767 RLAERQLQEEQEKKAKEAA 785
>DRPL_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy
protein)
Length = 1183
Score = 30.8 bits (68), Expect = 3.9
Identities = 27/109 (24%), Positives = 40/109 (35%), Gaps = 2/109 (1%)
Query: 2 DLPNRDKQPTVDVKKTASRDLQNDNKIMALTSVGSSSVLKDKDPDTDSNRISGTKRPLSD 61
DL + D + D + RD+ DN+ + + SV + D D+ S G RP
Sbjct: 103 DLDSLDGRSINDDGSSDPRDIDQDNRSTSPSIYSPGSV--ENDSDSSSGLSQGPARPYHP 160
Query: 62 YPVNHHLQQSPGNSTANGHLVYVRRKSEAELGKCAAFENPTNNAFCQPP 110
P+ P + + S G A E PT+ F PP
Sbjct: 161 PPLFPPSPPPPDSIPRQPESGFEPHPSVPPTGYHAPMEPPTSRLFQGPP 209
>AMYH_YEAST (P08640) Glucoamylase S1/S2 precursor (EC 3.2.1.3)
(Glucan 1,4-alpha-glucosidase) (1,4-alpha-D-glucan
glucohydrolase)
Length = 1367
Score = 30.8 bits (68), Expect = 3.9
Identities = 25/109 (22%), Positives = 38/109 (33%)
Query: 71 SPGNSTANGHLVYVRRKSEAELGKCAAFENPTNNAFCQPPRQLCSEEETALPKPQLKEPN 130
+P +ST V S + +A + P + E ++ P P
Sbjct: 655 TPSSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVPTPSSST 714
Query: 131 VSCFPAFAPFPLTSSISSSGRPSVPISCGKSTMKLAPVESNCVTTSSGP 179
A P P +S+ SS P S + APV S+ +SS P
Sbjct: 715 TESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAP 763
Score = 30.4 bits (67), Expect = 5.0
Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 6/165 (3%)
Query: 17 TASRDLQNDNKIMALTSVGSSSVLKDKDPDTDSNRISGTKRPLSDYPVNHHLQQSPGNST 76
T+S + + + T+ SS+ + ++ S ++ + S PV +P +ST
Sbjct: 411 TSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPV-----PTPSSST 465
Query: 77 ANGHLVYVRRKSEAELGKCAAFENPTNNAFCQPPRQLCSEEETALPKPQLKEPNVSCFPA 136
V + + + P + E ++ P P A
Sbjct: 466 TESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSA 525
Query: 137 FAPFPLTSSISSSGRPSVPISCGKSTMKLAPVESNCVTTSSGPTI 181
AP P +S+ SS P V S +S+ P S+ T SS +
Sbjct: 526 PAPTPSSSTTESSSAP-VTSSTTESSSAPVPTPSSSTTESSSTPV 569
Score = 29.6 bits (65), Expect = 8.6
Identities = 18/63 (28%), Positives = 26/63 (40%)
Query: 117 EETALPKPQLKEPNVSCFPAFAPFPLTSSISSSGRPSVPISCGKSTMKLAPVESNCVTTS 176
E ++ P P A P P +S+ SS P+ S + APV S+ +S
Sbjct: 575 ESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPAPTPSSSTTESSSAPVTSSTTESS 634
Query: 177 SGP 179
S P
Sbjct: 635 SAP 637
>SOJO_XENLA (Q9PW73) Cytoskeletal protein Sojo (p170)
Length = 1335
Score = 30.4 bits (67), Expect = 5.0
Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 193 EERYQQLQMLLRKLDQ-----SDQVEYVQMLQSLSSVELSRHAVELEKRAIQLSLEEAKE 247
EE+Y QL++L +++ +D V+ +Q + +EL+ + +E+R QL L + +
Sbjct: 449 EEKYLQLELLCKQIQMDKERLTDCVKELQGKLGKAQIELTNTKLSMEQRTSQLQLIQQEL 508
Query: 248 LQRVA 252
L++ +
Sbjct: 509 LEKAS 513
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.310 0.127 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,897,508
Number of Sequences: 164201
Number of extensions: 1381873
Number of successful extensions: 3262
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 3228
Number of HSP's gapped (non-prelim): 65
length of query: 281
length of database: 59,974,054
effective HSP length: 109
effective length of query: 172
effective length of database: 42,076,145
effective search space: 7237096940
effective search space used: 7237096940
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0117b.7