BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0115.1
(204 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VNUC_IAZJ2 (P26085) Nucleoprotein 32 1.0
VNUC_IAZJ1 (P26084) Nucleoprotein 32 1.0
VNUC_IAZTE (P15679) Nucleoprotein 32 1.3
VNUC_IAZON (P26087) Nucleoprotein 32 1.3
VNUC_IAZI4 (P68042) Nucleoprotein 32 1.3
VNUC_IAWIS (P68043) Nucleoprotein 32 1.3
VNUC_IAUSS (P18073) Nucleoprotein 32 1.3
VNUC_IAOHI (P23997) Nucleoprotein 32 1.3
VNUC_IAZJ3 (P26086) Nucleoprotein 31 1.7
VNUC_IANT6 (P03467) Nucleoprotein 31 1.7
VNUC_IAVI6 (P26073) Nucleoprotein 31 2.3
VNUC_IASIN (P26072) Nucleoprotein 31 2.3
VNUC_IAHO1 (P22435) Nucleoprotein 31 2.3
VNUC_IAHIC (P26069) Nucleoprotein 31 2.3
VNUC_IAFOW (P18071) Nucleoprotein 31 2.3
VNUC_IABRA (P18069) Nucleoprotein 31 2.3
VNUC_IAANN (P21433) Nucleoprotein 31 2.3
VNUC_IAZW2 (P26083) Nucleoprotein 30 3.0
VNUC_IAZW1 (P26082) Nucleoprotein 30 3.0
VNUC_IAZH1 (P16986) Nucleoprotein 30 3.0
>VNUC_IAZJ2 (P26085) Nucleoprotein
Length = 498
Score = 32.0 bits (71), Expect = 1.0
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 9/148 (6%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSITIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYRRIDGKWMRELILYDKEE 115
Query: 102 FRRRYRMQKH------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLAYG 155
RR +R + I+ S+ ++ QR A + G+ P + + M+
Sbjct: 116 IRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDP--RMCSLMQGSTLP 173
Query: 156 VAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT A+E +R +GI
Sbjct: 174 RRSGAAGAAVKGVGTIAMELIRMIKRGI 201
>VNUC_IAZJ1 (P26084) Nucleoprotein
Length = 498
Score = 32.0 bits (71), Expect = 1.0
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 9/148 (6%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSITIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYRRIDGKWMRELILYDKEE 115
Query: 102 FRRRYRMQKH------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLAYG 155
RR +R + I+ S+ ++ QR A + G+ P + + M+
Sbjct: 116 IRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDP--RMCSLMQGSTLP 173
Query: 156 VAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT A+E +R +GI
Sbjct: 174 RRSGAAGAAVKGVGTIAMELIRMIKRGI 201
>VNUC_IAZTE (P15679) Nucleoprotein
Length = 498
Score = 31.6 bits (70), Expect = 1.3
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 9/148 (6%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSITIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEE 115
Query: 102 FRRRYRMQKH------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLAYG 155
RR +R + I+ S+ ++ QR A + G+ P + + M+
Sbjct: 116 IRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDP--RMCSLMQGSTLP 173
Query: 156 VAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT A+E +R +GI
Sbjct: 174 RRSGAAGAAVKGVGTIAMELIRMIKRGI 201
>VNUC_IAZON (P26087) Nucleoprotein
Length = 498
Score = 31.6 bits (70), Expect = 1.3
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 9/148 (6%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSITIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEE 115
Query: 102 FRRRYRMQKH------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLAYG 155
RR +R + I+ S+ ++ QR A + G+ P + + M+
Sbjct: 116 IRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDP--RMCSLMQGSTLP 173
Query: 156 VAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT A+E +R +GI
Sbjct: 174 RRSGAAGAAVKGVGTIAMELIRMIKRGI 201
>VNUC_IAZI4 (P68042) Nucleoprotein
Length = 498
Score = 31.6 bits (70), Expect = 1.3
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 9/148 (6%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSITIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEE 115
Query: 102 FRRRYRMQKH------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLAYG 155
RR +R + I+ S+ ++ QR A + G+ P + + M+
Sbjct: 116 IRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDP--RMCSLMQGSTLP 173
Query: 156 VAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT A+E +R +GI
Sbjct: 174 RRSGAAGAAVKGVGTIAMELIRMIKRGI 201
>VNUC_IAWIS (P68043) Nucleoprotein
Length = 498
Score = 31.6 bits (70), Expect = 1.3
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 9/148 (6%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSITIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEE 115
Query: 102 FRRRYRMQKH------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLAYG 155
RR +R + I+ S+ ++ QR A + G+ P + + M+
Sbjct: 116 IRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDP--RMCSLMQGSTLP 173
Query: 156 VAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT A+E +R +GI
Sbjct: 174 RRSGAAGAAVKGVGTIAMELIRMIKRGI 201
>VNUC_IAUSS (P18073) Nucleoprotein
Length = 498
Score = 31.6 bits (70), Expect = 1.3
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSLTIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYKRVDGKWMRELVLYDKEE 115
Query: 102 FRRRYRMQKH-------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLAY 154
RR +R + L ++ + +D + QR A + G+ P + + M+
Sbjct: 116 IRRIWRQANNGDDATAGLTHMMIWHSNLNDTTY-QRTRALVRTGMDP--RMCSLMQGSTL 172
Query: 155 GVAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT LE +R +GI
Sbjct: 173 PRRSGAAGAAVKGVGTMVLELIRMIKRGI 201
>VNUC_IAOHI (P23997) Nucleoprotein
Length = 498
Score = 31.6 bits (70), Expect = 1.3
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSLTIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYKRVDGKWMRELVLYDKEE 115
Query: 102 FRRRYRMQKH-------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLAY 154
RR +R + L ++ + +D + QR A + G+ P + + M+
Sbjct: 116 IRRIWRQANNGDDATAGLTHMMIWHSNLNDTTY-QRTRALVRTGMDP--RMCSLMQGSTL 172
Query: 155 GVAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT LE +R +GI
Sbjct: 173 PRRSGAAGAAVKGVGTMVLELIRMIKRGI 201
>VNUC_IAZJ3 (P26086) Nucleoprotein
Length = 498
Score = 31.2 bits (69), Expect = 1.7
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 9/148 (6%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSITIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYRRIDGKWTRELILYDKEE 115
Query: 102 FRRRYRMQKH------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLAYG 155
RR +R + I+ S+ ++ QR A + G+ P + + M+
Sbjct: 116 IRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDP--RMCSLMQGSTLP 173
Query: 156 VAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT A+E +R +GI
Sbjct: 174 RRSGAAGAAVKGVGTIAMELIRMIKRGI 201
>VNUC_IANT6 (P03467) Nucleoprotein
Length = 498
Score = 31.2 bits (69), Expect = 1.7
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSLTIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYKRVDGKWMRELVLYDKGE 115
Query: 102 FRRRYRMQKH-------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLAY 154
RR +R + L ++ + +D + QR A + G+ P + + M+
Sbjct: 116 IRRIWRQANNGDDATAGLTHMMIWHSNLNDTTY-QRTRALVRTGMDP--RMCSLMQGSTL 172
Query: 155 GVAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT +E +R +GI
Sbjct: 173 PRRSGAAGAAVKGVGTMVMELIRMIKRGI 201
>VNUC_IAVI6 (P26073) Nucleoprotein
Length = 498
Score = 30.8 bits (68), Expect = 2.3
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSLTIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYKRVDGKWMRELVLYDKEE 115
Query: 102 FRRRYRMQKH-------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLAY 154
RR +R + L ++ + +D + QR A + G+ P + + M+
Sbjct: 116 IRRIWRQANNGDDATAGLTHMMIWHSNLNDTTY-QRTRALVRTGMDP--RMCSLMQGSTL 172
Query: 155 GVAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT +E +R +GI
Sbjct: 173 PRRSGAAGAAVKGVGTMVMELIRMIKRGI 201
>VNUC_IASIN (P26072) Nucleoprotein
Length = 498
Score = 30.8 bits (68), Expect = 2.3
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSLTIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYKRVNGKWMRELVLYDKEE 115
Query: 102 FRRRYRMQKH-------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLAY 154
RR +R + L ++ + +D + QR A + G+ P + + M+
Sbjct: 116 IRRIWRQANNGDDATAGLTHMMIWHSNLNDTTY-QRTRALVRTGMDP--RMCSLMQGSTL 172
Query: 155 GVAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT +E +R +GI
Sbjct: 173 PRRSGAAGAAVKGVGTMVMELIRMIKRGI 201
>VNUC_IAHO1 (P22435) Nucleoprotein
Length = 498
Score = 30.8 bits (68), Expect = 2.3
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSLTIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYKRVDGKWMRELVLYDKEE 115
Query: 102 FRRRYRMQKH-------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLAY 154
RR +R + L ++ + +D + QR A + G+ P + + M+
Sbjct: 116 IRRIWRQANNGDDATAGLTHMMIWHSNLNDTTY-QRTRALVRTGMDP--RMCSLMQGSTL 172
Query: 155 GVAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT +E +R +GI
Sbjct: 173 PRRSGAAGAAVKGVGTMVMELIRMIKRGI 201
>VNUC_IAHIC (P26069) Nucleoprotein
Length = 498
Score = 30.8 bits (68), Expect = 2.3
Identities = 45/181 (24%), Positives = 75/181 (40%), Gaps = 14/181 (7%)
Query: 10 SIDVQISQISSNLLQISQKMDPSECPFDLAAYIQNSQIEEAYVLNRFRERRRKIREDTAP 69
S+ IS I +Q+ ++ S+ L IQNS E VL+ F ERR K E+ P
Sbjct: 28 SVGKMISGIGRFYIQMCTELKLSDYEGRL---IQNSLTIERMVLSAFDERRNKYLEE-HP 83
Query: 70 RSRKYLGRDHTAANQRLIGDYFANEPTYDDAMFRRRYRMQKH-------LFLRIVDDLSS 122
+ K + +R+ G + YD RR +R + L ++ +
Sbjct: 84 SAGKDPKKTGGPIYKRVGGKWMRELILYDKEEIRRIWRQANNGDDATAGLTHMMIWHSNL 143
Query: 123 SDNYFTQRVDAANKQGISPLAKCTTAMRMLAYGVAADAVDEYIKIGGTTALECLRRFCKG 182
+D + QR A + G+ P + + M+ + A +K GT +E +R +G
Sbjct: 144 NDTTY-QRTRALVRTGMDP--RMCSLMQGSTLPRRSGAAGAAVKGVGTMVMELIRMIKRG 200
Query: 183 I 183
I
Sbjct: 201 I 201
>VNUC_IAFOW (P18071) Nucleoprotein
Length = 498
Score = 30.8 bits (68), Expect = 2.3
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSLTIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYKRVDGKWMRELVLYDKEE 115
Query: 102 FRRRYRMQKH-------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLAY 154
RR +R + L ++ + +D + QR A + G+ P + + M+
Sbjct: 116 IRRIWRQANNGDDATAGLTHMMIWHSNLNDTTY-QRTRALVRTGMDP--RMCSLMQGSTL 172
Query: 155 GVAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT +E +R +GI
Sbjct: 173 PRRSGAAGAAVKGVGTMVMELIRMIKRGI 201
>VNUC_IABRA (P18069) Nucleoprotein
Length = 498
Score = 30.8 bits (68), Expect = 2.3
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSLTIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYKRVDGKWMRELVLYDKEE 115
Query: 102 FRRRYRMQKH-------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLAY 154
RR +R + L ++ + +D + QR A + G+ P + + M+
Sbjct: 116 IRRIWRQANNGDDATAGLTHMMIWHSNLNDTTY-QRTRALVRTGMDP--RMCSLMQGSTL 172
Query: 155 GVAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT LE +R +GI
Sbjct: 173 PRRSGAAGAAVKGVGTMVLELIRIIKRGI 201
>VNUC_IAANN (P21433) Nucleoprotein
Length = 498
Score = 30.8 bits (68), Expect = 2.3
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSLTIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYKRVDGKWMRELVLYDKEE 115
Query: 102 FRRRYRMQKH-------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLAY 154
RR +R + L ++ + +D + QR A + G+ P + + M+
Sbjct: 116 IRRIWRQANNGDDATAGLTHMMIWHSNLNDTTY-QRTRALVRTGMDP--RMCSLMQGSTL 172
Query: 155 GVAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT +E +R +GI
Sbjct: 173 PRRSGAAGAAVKGVGTMVMELIRMIKRGI 201
>VNUC_IAZW2 (P26083) Nucleoprotein
Length = 498
Score = 30.4 bits (67), Expect = 3.0
Identities = 38/148 (25%), Positives = 61/148 (40%), Gaps = 9/148 (6%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSITIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYRRIDGKWMRELILYDKEE 115
Query: 102 FRRRYRMQKH------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLAYG 155
RR +R + I+ S+ ++ QR A + G+ P + + M+
Sbjct: 116 IRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDP--RMCSLMQGSTLP 173
Query: 156 VAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT +E +R +GI
Sbjct: 174 RRSGAAGAAVKGVGTIVMELIRMIKRGI 201
>VNUC_IAZW1 (P26082) Nucleoprotein
Length = 498
Score = 30.4 bits (67), Expect = 3.0
Identities = 38/148 (25%), Positives = 61/148 (40%), Gaps = 9/148 (6%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSITIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYRRIDGKWMRELILYDKEE 115
Query: 102 FRRRYRMQKH------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLAYG 155
RR +R + I+ S+ ++ QR A + G+ P + + M+
Sbjct: 116 IRRIWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDP--RMCSLMQGSTLP 173
Query: 156 VAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT +E +R +GI
Sbjct: 174 RRSGAAGAAVKGVGTIVMELIRMIKRGI 201
>VNUC_IAZH1 (P16986) Nucleoprotein
Length = 498
Score = 30.4 bits (67), Expect = 3.0
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 13/150 (8%)
Query: 42 IQNSQIEEAYVLNRFRERRRKIREDTAPRSRKYLGRDHTAANQRLIGDYFANEPTYDDAM 101
IQNS E VL+ F ERR K E+ P + K + +R+ G + YD
Sbjct: 57 IQNSLTIERMVLSAFDERRNKYLEE-HPSAGKDPKKTGGPIYKRVDGKWMRELVLYDKEE 115
Query: 102 FRRRYRMQKH--------LFLRIVDDLSSSDNYFTQRVDAANKQGISPLAKCTTAMRMLA 153
RR +R + L I + Y QR A + G+ P + + M+
Sbjct: 116 MRRIWRQANNGDDATAGLTHLMIWHSNLNDTTY--QRTRALVRTGMDP--RMCSLMQGST 171
Query: 154 YGVAADAVDEYIKIGGTTALECLRRFCKGI 183
+ A +K GT +E +R +GI
Sbjct: 172 LPRRSGAAGAAVKGVGTMVMELIRMIKRGI 201
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.137 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,973,763
Number of Sequences: 164201
Number of extensions: 829241
Number of successful extensions: 2719
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 2719
Number of HSP's gapped (non-prelim): 54
length of query: 204
length of database: 59,974,054
effective HSP length: 105
effective length of query: 99
effective length of database: 42,732,949
effective search space: 4230561951
effective search space used: 4230561951
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0115.1