BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0112.9
         (1105 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NIN_MOUSE (Q61043) Ninein                                              32  7.2

>NIN_MOUSE (Q61043) Ninein
          Length = 2035

 Score = 32.3 bits (72), Expect = 7.2
 Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 21/145 (14%)

Query: 466 RQFLSEDH-EYRKC-----PKKFTKGK--GETSTKPRRLNGEEVWERIKHLPSKEESKEG 517
           R   SE+H E   C     PK    GK  G  S    + +GEE+ E     P +EE++  
Sbjct: 77  RTLSSEEHFEESDCSPEAQPKYVRGGKRYGRRSLPEFQESGEEIEEVTVLEPLEEEARSS 136

Query: 518 PSQGYGVKHHW-TSRSIFWE----LPYWKTLLLPHNIDVMH----TERNVFLNILFTVMD 568
           P        HW T RS  +E    L +W     P +++  H       +     L  V +
Sbjct: 137 PIPAGDCGEHWKTQRSEEYEAEGQLRFWN----PDDLNASHGGSCPPPDWIEEKLQEVCE 192

Query: 569 TKGKTKDTFKSRKDLEEYCLRGGLE 593
             G T+D   +RK L   C + GL+
Sbjct: 193 DLGITRDGHLNRKKLVSICEQYGLQ 217


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.348    0.152    0.547 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,864,810
Number of Sequences: 164201
Number of extensions: 4946774
Number of successful extensions: 18112
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18111
Number of HSP's gapped (non-prelim): 1
length of query: 1105
length of database: 59,974,054
effective HSP length: 121
effective length of query: 984
effective length of database: 40,105,733
effective search space: 39464041272
effective search space used: 39464041272
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 71 (32.0 bits)