BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0112.11
(1331 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 766 0.0
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 461 e-129
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 175 6e-43
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 165 9e-40
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 110 3e-23
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 109 4e-23
YME4_YEAST (Q04711) Transposon Ty1 protein B 103 3e-21
YJZ9_YEAST (P47100) Transposon Ty1 protein B 103 4e-21
YMT5_YEAST (Q04214) Transposon Ty1 protein B 102 5e-21
YMD9_YEAST (Q03434) Transposon Ty1 protein B 102 5e-21
YJZ7_YEAST (P47098) Transposon Ty1 protein B 102 5e-21
YMU0_YEAST (Q04670) Transposon Ty1 protein B 102 7e-21
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 96 9e-19
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 64 2e-09
M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710... 64 3e-09
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 55 1e-06
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 53 5e-06
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 48 2e-04
M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300... 48 2e-04
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 45 0.001
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 766 bits (1977), Expect = 0.0
Identities = 474/1347 (35%), Positives = 740/1347 (54%), Gaps = 83/1347 (6%)
Query: 12 VPKFDGH--YDHWALLMENLLRSKEYWPIVADGVPALAPNANAEQIKIHEEAKLKDLKAK 69
V KF+G + W M +LL + ++ + + +K + A L D +A
Sbjct: 8 VAKFNGDNGFSTWQRRMRDLLIQQGLHKVLD------VDSKKPDTMKAEDWADL-DERAA 60
Query: 70 NYLFQSIERSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRREFEVLGMKEGET 129
+ + + ++ I++ +T++ IW + T ++ L +++ L M EG
Sbjct: 61 SAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYL---KKQLYALHMSEGTN 117
Query: 130 VVNYFARTLSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDVDTITIDQL 189
+++ ++ ++ G I+E +L SL ++ + +I TI + +
Sbjct: 118 FLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKT--TIELKDV 175
Query: 190 QSSLLVQEQRMKGYREEEQAL----RATSSGKSERGRGRTGNRGRGRGRGSFNKESVECY 245
S+LL+ E+ K + QAL R S +S GR+G RG+ + R + CY
Sbjct: 176 TSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRN--CY 233
Query: 246 KCHKLGHFQYECPTWEESANYAELHEDHEELLLMARTETGKTSHTTLKIQGVDKKSLLMA 305
C++ GHF+ +CP + ++ + +T +Q D L +
Sbjct: 234 NCNQPGHFKRDCPNPRKGKGETSGQKNDD--------------NTAAMVQNNDNVVLFIN 279
Query: 306 KTAQEGC---SCPTSGKVWFLDSGCSNHMCGSREWFHNLDESFTTTVKLGDDSIMTVKGK 362
+ +E C S P S W +D+ S+H R+ F TVK+G+ S + G
Sbjct: 280 E--EEECMHLSGPESE--WVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGI 335
Query: 363 GDVKLQIG-GLIQVFTEVYFIPELKNNLLSIGQLLERD--LSITFKKKWCRIYHKDKG-L 418
GD+ ++ G V +V +P+L+ NL+S G L+RD S +KW KG L
Sbjct: 336 GDICIKTNVGCTLVLKDVRHVPDLRMNLIS-GIALDRDGYESYFANQKW----RLTKGSL 390
Query: 419 IIQSRMSSNRMFAVIATMIAPTCFSTTIKDESELWHKRYGHLGYSGLKILAQKAMVKGLP 478
+I ++ ++ A + + + +LWHKR GH+ GL+ILA+K+++
Sbjct: 391 VIAKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAK 450
Query: 479 MLGELDKPCEECLKGKQHIDPFPQKSTWRAERKLQLIHSDICGPIKPKSNSQKRYFITFI 538
G KPC+ CL GKQH F Q S+ R L L++SD+CGP++ +S +YF+TFI
Sbjct: 451 --GTTVKPCDYCLFGKQHRVSF-QTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFI 507
Query: 539 DDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCELN 598
DD RK WVY+L K + F+KF L E+E+G KL LR+D GGE+ SREF E+C +
Sbjct: 508 DDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSH 567
Query: 599 GIKRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSPTI 658
GI+ + T TPQ NGV+ER NRTI+ VR ML K+P+ FW EAV + Y+ NRSP++
Sbjct: 568 GIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSV 627
Query: 659 AVKNITPEECWSGKKPSVNFFRIFGCVAYAHVPDSQRRKLDNRSIKCIYLGSSEESKAYR 718
+ PE W+ K+ S + ++FGC A+AHVP QR KLD++SI CI++G +E YR
Sbjct: 628 PLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYR 687
Query: 719 LYDPVSKKIIINRDVVFDESSGWDWSSGAEQMEFFDEMVDTNEVSTVPILDEVEHQVHSE 778
L+DPV KK+I +RDVVF ES + + A+ E + N V T+P S
Sbjct: 688 LWDPVKKKVIRSRDVVFRES---EVRTAADMSEKVKNGIIPNFV-TIPSTSNNPTSAEST 743
Query: 779 TNDTSPELEDNGEA---SVSASPGVAEEERERRGRRNVQQPVWMKEFVSGEDLSDEGVSN 835
T++ S + E GE GV E E +G QP+ E V +
Sbjct: 744 TDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQ-HQPLRRSE--------RPRVES 794
Query: 836 FVCADAEYSFVSIHSDPMTYDEA---AKSDHWRKAMDLEIQAIERNNTWQLAELPKGDKS 892
EY +S +P + E + + KAM E++++++N T++L ELPKG +
Sbjct: 795 RRYPSTEYVLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRP 854
Query: 893 IGVKWVYKTKLNEKGEIEKHKARLVAKGYAQQQGIDFTEVFAPVARWDTIRTILAIAAVR 952
+ KWV+K K + ++ ++KARLV KG+ Q++GIDF E+F+PV + +IRTIL++AA
Sbjct: 855 LKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASL 914
Query: 953 GWNVFQLDVKSAFLHGKIDETVFVDQPQGYQVRGAERKVYKLHKALYGLRQAPRAWYSRI 1012
V QLDVK+AFLHG ++E ++++QP+G++V G + V KL+K+LYGL+QAPR WY +
Sbjct: 915 DLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKF 974
Query: 1013 DSYFQKQGFVRSDSDHTLYVKQGENGLAIIVSLYVDDLIYTGNCELLISEFKASMEREFD 1072
DS+ + Q ++++ SD +Y K+ II+ LYVDD++ G + LI++ K + + FD
Sbjct: 975 DSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFD 1034
Query: 1073 MSDLGKMSYFLGVEIL--QNSEGIFMCQSKYAKEVLERFGMKNSNPVRNPVVPGTKLNKR 1130
M DLG LG++I+ + S +++ Q KY + VLERF MKN+ PV P+ KL+K+
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094
Query: 1131 GCGSEVD------ATQYKQMIGSLMYLTV-SRPDLMYSVSLVSRYMEKPTELHVQIVKRV 1183
C + V+ Y +GSLMY V +RPD+ ++V +VSR++E P + H + VK +
Sbjct: 1095 MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWI 1154
Query: 1184 MRYLNGTVDMGIQYRRSGSMKLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWSSKKQA 1243
+RYL GT + + S + L YTD+D AGD+D+RKS++GY+F G+I+W SK Q
Sbjct: 1155 LRYLRGTTGDCLCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQK 1213
Query: 1244 VVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKCSTIYCDNSSTIKLSKNPVMHGR 1303
V+LSTTEAE+IAA + IWL+R L LG Q K +YCD+ S I LSKN + H R
Sbjct: 1214 CVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQ-KEYVVYCDSQSAIDLSKNSMYHAR 1272
Query: 1304 SKHINVRYHFLRDLVRDGRIELVHCST 1330
+KHI+VRYH++R++V D ++++ ST
Sbjct: 1273 TKHIDVRYHWIREMVDDESLKVLKIST 1299
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 461 bits (1187), Expect = e-129
Identities = 376/1419 (26%), Positives = 666/1419 (46%), Gaps = 150/1419 (10%)
Query: 12 VPKFDGH-YDHWALLMENLLRSKEYWPIVADGVPALAPNANAEQIKIHEEAKLKDLKAKN 70
+ FDG Y W + LL ++ +V DG L PN ++ + K + AK+
Sbjct: 8 IKPFDGEKYAIWKFRIRALLAEQDVLKVV-DG---LMPN------EVDDSWKKAERCAKS 57
Query: 71 YLFQSIERSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRREFEVLGMKEGETV 130
+ + + S L + T+++I +++ + + ++ ALR+ L + ++
Sbjct: 58 TIIEYLSDSFLNFATSDITARQILENLDAVYERKSLASQL---ALRKRLLSLKLSSEMSL 114
Query: 131 VNYFARTLSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDVDTITIDQLQ 190
+++F +++++ G I+E + +L +L ++ ++ +IE ++ + +T+ ++
Sbjct: 115 LSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSE-ENLTLAFVK 173
Query: 191 SSLLVQEQRMKGYREE--EQALRATSSGKSERGRGRTGNRGRGRGRGSF---NKESVECY 245
+ LL QE ++K + ++ + A + + + + F +K V+C+
Sbjct: 174 NRLLDQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCH 233
Query: 246 KCHKLGHFQYECPTWEESANYAELHEDHEELLLMARTETGKTSHTTLKIQGVDKKSLLMA 305
C + GH + +C ++ N ++++E+ + +T + ++ V+ S++
Sbjct: 234 HCGREGHIKKDCFHYKRILN--NKNKENEK-----QVQTATSHGIAFMVKEVNNTSVM-- 284
Query: 306 KTAQEGCSCPTSGKVWFLDSGCSNHMCGSREWFHNLDE---SFTTTVKLGDDSIMTVKGK 362
+ C + LDSG S+H+ + + E V + I K +
Sbjct: 285 ----DNCG-------FVLDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATK-R 332
Query: 363 GDVKLQIGGLIQVFTEVYFIPELKNNLLSIGQLLERDLSITFKKKWCRIYHKDKGLIIQS 422
G V+L+ I + +V F E NL+S+ +L E +SI F K I ++ S
Sbjct: 333 GIVRLRNDHEITL-EDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNS 391
Query: 423 RMSSNRMFAVIATMIAPTCFSTTIKDESELWHKRYGHLGYSGLKILAQKAMVKGLPMLGE 482
M +N V + K+ LWH+R+GH+ L + +K M +L
Sbjct: 392 GMLNN----VPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNN 447
Query: 483 LD---KPCEECLKGKQHIDPFPQ-KSTWRAERKLQLIHSDICGPIKPKSNSQKRYFITFI 538
L+ + CE CL GKQ PF Q K +R L ++HSD+CGPI P + K YF+ F+
Sbjct: 448 LELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFV 507
Query: 539 DDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCELN 598
D F YL+ KS F+ F +E K+ L D G E+ S E +FC
Sbjct: 508 DQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKK 567
Query: 599 GIKRQLTASYTPQQNGVSERKNRT----------------------------IMNMV--R 628
GI LT +TPQ NGVSER RT ++N + R
Sbjct: 568 GISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSR 627
Query: 629 CMLTEKKVPREFWPEAVNW---------SVYIQNRSPTIAVKNITPEECWSGKKPSVNFF 679
++ K P E W + +VY+ ++ + + + + G +P N F
Sbjct: 628 ALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGYEP--NGF 685
Query: 680 RIFGCV-----AYAHVPDSQRRKLDNRSIK--CIYLGSSEES----------KAYRLYDP 722
+++ V V + +++R++K ++L S+ES K + P
Sbjct: 686 KLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKIIQTEFP 745
Query: 723 VSKKIIINRDVVFD--ESSGWDWSSGAEQMEFFDEMVDTNEVSTVPILDEVEHQVHSETN 780
K N + D ES ++ + + ++ + ++ E + L + + N
Sbjct: 746 NESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESNKYFLN 805
Query: 781 DTSPELEDN--GEASVSASPGVAEEERERRGRRNV-----------------QQPVWMKE 821
++ D+ E+ S +P + E + + + + K
Sbjct: 806 ESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRSERLKTKP 865
Query: 822 FVSGEDLSDEGVSNFVCADAEYSFVSIHSDPMTYDEAAKSDH---WRKAMDLEIQAIERN 878
+S + ++ N V +A F + P ++DE D W +A++ E+ A + N
Sbjct: 866 QISYNE--EDNSLNKVVLNAHTIFNDV---PNSFDEIQYRDDKSSWEEAINTELNAHKIN 920
Query: 879 NTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAKGYAQQQGIDFTEVFAPVAR 938
NTW + + P+ + +WV+ K NE G ++KARLVA+G+ Q+ ID+ E FAPVAR
Sbjct: 921 NTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVAR 980
Query: 939 WDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQGYQVRGAERKVYKLHKAL 998
+ R IL++ V Q+DVK+AFL+G + E +++ PQG V KL+KA+
Sbjct: 981 ISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCN--SDNVCKLNKAI 1038
Query: 999 YGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYV-KQGENGLAIIVSLYVDDLIYTGNCE 1057
YGL+QA R W+ + ++ FV S D +Y+ +G I V LYVDD++
Sbjct: 1039 YGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDM 1098
Query: 1058 LLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQSKYAKEVLERFGMKNSNPV 1117
++ FK + +F M+DL ++ +F+G+ I + I++ QS Y K++L +F M+N N V
Sbjct: 1099 TRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAV 1158
Query: 1118 RNPVVPGTKLNKRGCGSEVDA-TQYKQMIGSLMYLTV-SRPDLMYSVSLVSRYMEKPTEL 1175
P+ +K+N S+ D T + +IG LMY+ + +RPDL +V+++SRY K
Sbjct: 1159 STPL--PSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSE 1216
Query: 1176 HVQIVKRVMRYLNGTVDMGIQYRRSGSM--KLISYTDSDYAGDVDDRKSTSGYVF-MLGS 1232
Q +KRV+RYL GT+DM + ++++ + K+I Y DSD+AG DRKST+GY+F M
Sbjct: 1217 LWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDF 1276
Query: 1233 GSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKCSTIYCDNSSTI 1292
I W++K+Q V+ S+TEAE++A + +WL+ +L S+ IY DN I
Sbjct: 1277 NLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCI 1336
Query: 1293 KLSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCSTE 1331
++ NP H R+KHI+++YHF R+ V++ I L + TE
Sbjct: 1337 SIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTE 1375
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 175 bits (444), Expect = 6e-43
Identities = 98/302 (32%), Positives = 161/302 (52%), Gaps = 4/302 (1%)
Query: 959 LDVKSAFLHGKIDETVFVDQPQGYQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQK 1018
+DV +AFL+ +DE ++V QP G+ V++L+ +YGL+QAP W I++ +K
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 1019 QGFVRSDSDHTLYVKQGENGLAIIVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGK 1078
GF R + +H LY + +G I + +YVDDL+ + K + + + M DLGK
Sbjct: 61 IGFCRHEGEHGLYFRSTSDG-PIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGK 119
Query: 1079 MSYFLGVEILQNSEG-IFMCQSKYAKEVLERFGMKNSNPVRNPVVPGTKLNKRGCGSEVD 1137
+ FLG+ I Q++ G I + Y + + + P+ L + D
Sbjct: 120 VDKFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKD 179
Query: 1138 ATQYKQMIGSLMYLT-VSRPDLMYSVSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQ 1196
T Y+ ++G L++ RPD+ Y VSL+SR++ +P +H++ +RV+RYL T M ++
Sbjct: 180 ITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLK 239
Query: 1197 YRRSGSMKLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWSSKK-QAVVSLSTTEAEFI 1255
YR + L Y D+ + D ST GYV +L + WSSKK + V+ + +TEAE+I
Sbjct: 240 YRSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYI 299
Query: 1256 AA 1257
A
Sbjct: 300 TA 301
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 165 bits (417), Expect = 9e-40
Identities = 80/223 (35%), Positives = 137/223 (60%), Gaps = 3/223 (1%)
Query: 1045 LYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQSKYAKE 1104
LYVDD++ TG+ L++ + F M DLG + YFLG++I + G+F+ Q+KYA++
Sbjct: 5 LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64
Query: 1105 VLERFGMKNSNPVRNPVVPGTKLNKRGCGSEV-DATQYKQMIGSLMYLTVSRPDLMYSVS 1163
+L GM + P+ P+ KLN ++ D + ++ ++G+L YLT++RPD+ Y+V+
Sbjct: 65 ILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVN 122
Query: 1164 LVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQYRRSGSMKLISYTDSDYAGDVDDRKST 1223
+V + M +PT ++KRV+RY+ GT+ G+ ++ + + ++ DSD+AG R+ST
Sbjct: 123 IVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRST 182
Query: 1224 SGYVFMLGSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIW 1266
+G+ LG I+WS+K+Q VS S+TE E+ A A + W
Sbjct: 183 TGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 110 bits (274), Expect = 3e-23
Identities = 142/609 (23%), Positives = 263/609 (42%), Gaps = 56/609 (9%)
Query: 758 DTNEVSTVPILDEVEHQVHSETNDTSPELEDNGEASVSASPGVAEEERERRGRRNVQQPV 817
DT++VS ++ H +TN + ++D+ + + S + E+ E V +
Sbjct: 1158 DTSDVSK-----DIPHIHSRQTNSSLGGMDDSNVLTTTKSKKRSLEDNETE--IEVSRDT 1210
Query: 818 WM-KEFVSGEDLSDEGVSNFVCADAEYSFVSIHSDPMTYDEAA-------KSDHWRKAMD 869
W K S E + N + A + + YDEA + D + +A
Sbjct: 1211 WNNKNMRSLEPPRSKKRINLIAAIKGVKSIKPVRTTLRYDEAITYNKDNKEKDRYVEAYH 1270
Query: 870 LEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAKGYAQQQGIDF 929
EI + + NTW + + K + + K HKAR VA+G Q
Sbjct: 1271 KEISQLLKMNTWDTNKYYDRNDIDPKKVINSMFIFNKKRDGTHKARFVARGDIQHPDTYD 1330
Query: 930 TEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQGYQVRGAER 989
+++ + + T L+IA + + QLD+ SA+L+ I E +++ P G
Sbjct: 1331 SDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELYIRPPPHL---GLND 1387
Query: 990 KVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYVKQGENGLAIIVSLYVDD 1049
K+ +L K+LYGL+Q+ WY I SY ++ + K + + + L+VDD
Sbjct: 1388 KLLRLRKSLYGLKQSGANWYETIKSYLINCCDMQEVRGWSCVFKNSQ----VTICLFVDD 1443
Query: 1050 LIYTGNCELLISEFKASMEREFD--MSDLGKMSY-----FLGVEI-LQNSEGIFMCQSKY 1101
+I + ++++++D + +LG+ LG+EI Q S+ + + K
Sbjct: 1444 MILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRSKYMKLGMEKS 1503
Query: 1102 AKEVLERFGM---KNSNPVRNPVVPGTKLNKRGCGSEVDATQYKQ-------MIGSLMYL 1151
E L + + +R P PG +++ E+D +YK+ +IG Y+
Sbjct: 1504 LTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDEL--EIDEDEYKEKVHEMQKLIGLASYV 1561
Query: 1152 TVS-RPDLMYSVSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQYRRS----GSMKLI 1206
R DL+Y ++ +++++ P+ + + +++++ T D + + ++ KL+
Sbjct: 1562 GYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNKLV 1621
Query: 1207 SYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIW 1266
+ +D+ Y G+ KS G +F+L I S K ++ STTEAE I AVS + I
Sbjct: 1622 AISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAE-IHAVS---EAIP 1676
Query: 1267 LRRILFSLGQVQGK---CSTIYCDNSSTIKLSKNPVMHG-RSKHINVRYHFLRDLVRDGR 1322
L L L Q K + D+ STI + K+ R++ + LRD V
Sbjct: 1677 LLNNLSHLVQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNN 1736
Query: 1323 IELVHCSTE 1331
+ + + T+
Sbjct: 1737 LYVYYIETK 1745
Score = 105 bits (263), Expect = 6e-22
Identities = 145/703 (20%), Positives = 268/703 (37%), Gaps = 80/703 (11%)
Query: 126 EGETVVNYFARTLS-IVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDVDTI 184
+G T + F T+S I+ ++K ++ + L + IL+ L+ F Y+ ++
Sbjct: 274 DGSTSADTFEITVSTIIQRLKENNINVSDRLACQLILKGLSGDFKYLRNQYRTKTNMK-- 331
Query: 185 TIDQL--QSSLLVQEQRMKGYREEEQALRATSSGKSERGRGRTGN-RGRGRGRGSFNKES 241
+ QL + L+ E ++ + Q + + R T N + R N
Sbjct: 332 -LSQLFAEIQLIYDENKIMNLNKPSQYKQHSEYKNVSRTSPNTTNTKVTTRNYQRTNSSK 390
Query: 242 VECYKCHKLGHFQYECPTWEESANYAELHEDHEELLLMARTETGKTSHTTLKIQGVDKKS 301
K H + S+ ++ ++ DH ++ + +L G +K
Sbjct: 391 PRAAKAHNIA----------TSSKFSRVNNDHINESTVSSQYLSDDNELSL---GQQQKE 437
Query: 302 LLMAKTAQEGCSCPTSGKVWFLDSGCSNHMCGSREWFHNLDESFTTTVKLGDDSIMTVKG 361
T P +DSG S + S + H+ + + + +
Sbjct: 438 SKPTHTIDSNDELPDH---LLIDSGASQTLVRSAHYLHHATPNSEINIVDAQKQDIPINA 494
Query: 362 KGDVKLQIGGLIQVFTEVYFIPELKNNLLSIGQLLERDLSITFKKKWCRIYHKDKGLIIQ 421
G++ + + P + +LLS+ +L ++++ F + + G ++
Sbjct: 495 IGNLHFNFQNGTKTSIKALHTPNIAYDLLSLSELANQNITACFTRN---TLERSDGTVLA 551
Query: 422 SRMSSNRMFAVIATMIAPTCFST-TIKDESE----------LWHKRYGHLGYSGLKILAQ 470
+ + + + P+ S TI + ++ L H+ GH + + Q
Sbjct: 552 PIVKHGDFYWLSKKYLIPSHISKLTINNVNKSKSVNKYPYPLIHRMLGHANFRSI----Q 607
Query: 471 KAMVKG-LPMLGELD--------KPCEECLKGKQHIDPFPQKSTWRAERK---LQLIHSD 518
K++ K + L E D C +CL GK + S + + Q +H+D
Sbjct: 608 KSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTD 667
Query: 519 ICGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEK--SGALESFKKFKLLAEKESGEKLS 576
I GP+ S YFI+F D+ R WVY L ++ L F + + ++
Sbjct: 668 IFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVL 727
Query: 577 CLRTDRGGEFNSREFTEFCELNGIKRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKV 636
++ DRG E+ ++ +F GI T + + +GV+ER NRT++N R +L +
Sbjct: 728 VIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGL 787
Query: 637 PREFWPEAVNWSVYIQNRSPTIAVKNITPEECWSGKKP-SVNFFRIFG--CVAYAHVPDS 693
P W AV +S I+N ++ KN +G + FG + H PDS
Sbjct: 788 PNHLWFSAVEFSTIIRN--SLVSPKNDKSARQHAGLAGLDITTILPFGQPVIVNNHNPDS 845
Query: 694 QRRKLDNRSIKCIYLGSSEESKAYRLYDPVSKKIIINRDVVFDESSGWDWSSGAEQMEF- 752
K+ R I L S S Y +Y P KK + + V + D S +Q +
Sbjct: 846 ---KIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQ----DKQSKLDQFNYD 898
Query: 753 ---FDEMVDTNEVSTVPILDEVEHQVHSETNDTSPELEDNGEA 792
FD+ D N ++ +Q E N+T + N E+
Sbjct: 899 TLTFDD--DLNRLT-------AHNQSFIEQNETEQSYDQNTES 932
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 109 bits (273), Expect = 4e-23
Identities = 99/435 (22%), Positives = 189/435 (42%), Gaps = 31/435 (7%)
Query: 912 HKARLVAKGYAQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKID 971
+KAR+V +G Q ++ + + I+ L IA R + LD+ AFL+ K++
Sbjct: 1337 YKARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLE 1395
Query: 972 ETVFVDQPQGYQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLY 1031
E +++ P R V KL+KALYGL+Q+P+ W + Y G + LY
Sbjct: 1396 EEIYIPHPHD------RRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLY 1449
Query: 1032 VKQGENGLAIIVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGKM------SYFLGV 1085
+ +N +++++YVDD + + E + EF ++ F++ G + + LG+
Sbjct: 1450 QTEDKN---LMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGM 1506
Query: 1086 EILQNSE-GIFMCQSKYAKEVLERFGMKNSNPVRNPVVPGTKLNKRGCGSEV-------- 1136
+++ N G K +++ + +R +P K +V
Sbjct: 1507 DLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEEEF 1566
Query: 1137 --DATQYKQMIGSLMYLT-VSRPDLMYSVSLVSRYMEKPTELHVQIVKRVMRYLNGTVDM 1193
+ +Q++G L Y+ R D+ ++V V+R + P E ++ ++++YL D+
Sbjct: 1567 RQGVLKLQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDI 1626
Query: 1194 GIQYRR--SGSMKLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWSSKKQAVVSLSTTE 1251
GI Y R + K+I+ TD+ G D +S G + G S K +S+TE
Sbjct: 1627 GIHYDRDCNKDKKVIAITDAS-VGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRCVSSTE 1685
Query: 1252 AEFIAAVSCACQCIWLRRILFSLGQVQGKCSTIYCDNSSTIKLSKNPVMHGRSKHINVRY 1311
AE A L+ L LG+ + D+ I+ + K ++
Sbjct: 1686 AELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKT 1745
Query: 1312 HFLRDLVRDGRIELV 1326
+++ +++ I+L+
Sbjct: 1746 EIIKEKIKEKSIKLL 1760
Score = 77.4 bits (189), Expect = 2e-13
Identities = 99/461 (21%), Positives = 181/461 (38%), Gaps = 53/461 (11%)
Query: 306 KTAQEGCSCPTSGKVWFLDSGCSNHMCGSREWFHNLDESFTTT--VKLGDDSIMTVKGKG 363
KT + S K+ +D+G ++ + HN ++S +T +G +S ++VKG G
Sbjct: 397 KTQKRSNKVYNSKKLVIIDTGSGVNITNDKTLLHNYEDSNRSTRFFGIGKNSSVSVKGYG 456
Query: 364 DVKLQIG--GLIQVFTEVYFIPELKNNLLSIGQLLERDLSITFKKKWCRIYHKD------ 415
+K++ G Y++PE ++ ++S L ++ + +K+ R+ +K
Sbjct: 457 YIKIKNGHNNTDNKCLLTYYVPEEESTIISCYDLAKKT-KMVLSRKYTRLGNKIIKIKTK 515
Query: 416 --KGLI------IQSRMSSNRMFAVIATMIAP----TCFSTTIKDESELWHKRYGHLGYS 463
G+I + R S + I +P S T++D HKR GH G
Sbjct: 516 IVNGVIHVKMNELIERPSDDSKINAIKPTSSPGFKLNKRSITLEDA----HKRMGHTGIQ 571
Query: 464 GLK-ILAQKAMVKGLPMLGELDKP-CEECLKGK------------QHIDPFPQKSTWRAE 509
++ + + L ++ E ++ C+ C K H S+W
Sbjct: 572 QIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTDHEPGSSWCM- 630
Query: 510 RKLQLIHSDICGPIKPKSNSQKRYFITFIDDFCR--KTWVYLLSEKSGALESFKKFKLLA 567
DI GP+ + KRY + +D+ R T + L +K
Sbjct: 631 --------DIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQYV 682
Query: 568 EKESGEKLSCLRTDRGGEFNSREFTEFCELNGIKRQLTASYTPQQNGVSERKNRTIMNMV 627
E + K+ + +DRG EF + + E+ GI LT++ NG +ER RTI+
Sbjct: 683 ETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITDA 742
Query: 628 RCMLTEKKVPREFWPEAVNWSVYIQNRSPTIAVKNITPEECWSGKKPSVNFFRIFGCVAY 687
+L + + +FW AV + I+N + + P + S + +V
Sbjct: 743 TTLLRQSNLRVKFWEYAVTSATNIRNYLEHKSTGKL-PLKAISRQPVTVRLMSFLPFGEK 801
Query: 688 AHVPDSQRRKLDNRSIKCIYLGSSEESKAYRLYDPVSKKII 728
+ + +KL + I L S Y+ + P KI+
Sbjct: 802 GIIWNHNHKKLKPSGLPSIILCKDPNSYGYKFFIPSKNKIV 842
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 103 bits (257), Expect = 3e-21
Identities = 122/516 (23%), Positives = 227/516 (43%), Gaps = 52/516 (10%)
Query: 849 HSDPMTYDEAAKS-DHWRKAMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKL--NE 905
+ + +TY++ K + + +A E+ + + NTW + K I K V + N
Sbjct: 807 YDEAITYNKDIKEKEKYIEAYHKEVNQLLKMNTWDTDKY-YDRKEIDPKRVINSMFIFNR 865
Query: 906 KGEIEKHKARLVAKGYAQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAF 965
K + HKAR VA+G Q + + + + T L++A + + QLD+ SA+
Sbjct: 866 KRD-GTHKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 924
Query: 966 LHGKIDETVFVDQPQGYQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSD 1025
L+ I E +++ P G K+ +L K+LYGL+Q+ WY I SY KQ +
Sbjct: 925 LYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEV 981
Query: 1026 SDHTLYVKQGENGLAIIVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGV 1085
+ K + + + L+VDD+I + ++++++D + LG
Sbjct: 982 RGWSCVFKNSQ----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIIN-----LGE 1032
Query: 1086 EILQNSEGIFMCQSKYAKEVLERFGMKNSNPVRNPVV------PGTKLNKRGCGS----- 1134
+ I + KY + + GM+NS + P + G KL+ G
Sbjct: 1033 SDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQ 1092
Query: 1135 ---EVDATQYKQ-------MIGSLMYLTVS-RPDLMYSVSLVSRYMEKPTELHVQIVKRV 1183
E+D +YK+ +IG Y+ R DL+Y ++ +++++ P+ + + +
Sbjct: 1093 DELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYEL 1152
Query: 1184 MRYLNGTVDMGIQYRRS----GSMKLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWSS 1239
++++ T D + + ++ KL++ +D+ Y G+ KS G +++L I S
Sbjct: 1153 IQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKS 1211
Query: 1240 KKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGK---CSTIYCDNSSTIK-LS 1295
K ++ STTEAE I A+S + + L L L Q K + D+ STI +
Sbjct: 1212 TKASLTCTSTTEAE-IHAIS---ESVPLLNNLSHLVQELNKKPITKGLLTDSKSTISIII 1267
Query: 1296 KNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCSTE 1331
N R++ + LRD V + + + T+
Sbjct: 1268 SNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETK 1303
Score = 102 bits (254), Expect = 7e-21
Identities = 117/539 (21%), Positives = 206/539 (37%), Gaps = 58/539 (10%)
Query: 323 LDSGCSNHMCGSREWFHNLDESFTTTVKLGDDSIMTVKGKGDVKLQIGGLIQVFTEVYFI 382
LDSG S + S H+ + V + + GD++ + +V
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 383 PELKNNLLSIGQLLERDLSITFKKKWCRIYHKDKGLIIQSRMSSNRMFAVIATMIAPTCF 442
P + +LLS+ +L D++ F K + + G ++ + + V + P+
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 443 S-----------TTIKDESELWHKRYGHLGYSGLKILAQKAMV-----KGLPMLGELDKP 486
S +T K H+ H ++ + + + +D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 487 CEECLKGK----QHIDPFPQKSTWRAERKLQLIHSDICGPIKPKSNSQKRYFITFIDDFC 542
C +CL GK +HI K + Q +H+DI GP+ S YFI+F D+
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQ-NSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETT 268
Query: 543 RKTWVYLLSEK--SGALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCELNGI 600
+ WVY L ++ L+ F + + + ++ DRG E+ +R +F E NGI
Sbjct: 269 KFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGI 328
Query: 601 KRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSPTIAV 660
T + + +GV+ER NRT+++ R L +P W A+ +S ++N +
Sbjct: 329 TPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKS 388
Query: 661 KNITPEECWSGKKPSVNFFRIFG--CVAYAHVPDSQRRKLDNRSIKCIYLGSSEESKAYR 718
K + ++ FG + H P+S K+ R I L S S Y
Sbjct: 389 KKSARQHAGLAGL-DISTLLPFGQPVIVNDHNPNS---KIHPRGIPGYALHPSRNSYGYI 444
Query: 719 LYDPVSKKIIINRDVVFDESSGWDWSSGAEQMEF----FDE-----------MVDTNEVS 763
+Y P KK + + V + S +Q + FDE + +NE+
Sbjct: 445 IYLPSLKKTVDTTNYVILQGK----ESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQ 500
Query: 764 TVPILD-EVEHQVHSETNDTSPELEDNGEASV-----SASPGVAEEERERRGRRNVQQP 816
L+ E +H S+ + PE N + S P E+ +R + N++ P
Sbjct: 501 QSDDLNIESDHDFQSDI-ELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAP 558
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 103 bits (256), Expect = 4e-21
Identities = 149/746 (19%), Positives = 279/746 (36%), Gaps = 95/746 (12%)
Query: 127 GETVVNYF-ARTLSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDVDTIT 185
G T + F + +I++++ G I + + I+R L+ ++ ++ + ++ T
Sbjct: 279 GSTPADAFETKVTNIIDRLNNNGIHINNKVACQLIMRGLSGEYKFLRYTRHRHLNM---T 335
Query: 186 IDQLQSSLLVQEQRMKGYREEEQALRATSSGKSERGRGRTGN---RGRGRGRGSFNKESV 242
+ +L + + +G R + R S + R T + R N
Sbjct: 336 VAELFLDIHAIYEEQQGSRNSKPNYRRNPSDEKNDSRSYTNTTKPKVIARNPQKTNNSKS 395
Query: 243 ECYKCHKLGHFQYECPTWEESANYA-----ELHEDHEELLLMARTET--GKTSHTTLKIQ 295
+ + H + T +S + + +L+ H+ +L TE+ T+H+ ++
Sbjct: 396 KTARAHNVSTSNNSPSTDNDSISKSTTEPIQLNNKHDLILGQKLTESTVNHTNHSDDELP 455
Query: 296 GVDKKSLLMAKTAQEGCSCPTSGKVWFLDSGCSNHMCGSREWFHNLDESFTTTVKLGDDS 355
G LL LDSG S + S H+ + V
Sbjct: 456 G----HLL-------------------LDSGASRTLIRSAHHIHSASSNPDINVVDAQKR 492
Query: 356 IMTVKGKGDVKLQIGGLIQVFTEVYFIPELKNNLLSIGQLLERDLSITFKKKWCRIYHKD 415
+ + GD++ + +V P + +LLS+ +L D++ F K + +
Sbjct: 493 NIPINAIGDLQFHFQDNTKTSIKVLHTPNIAYDLLSLNELAAVDITACFTKN---VLERS 549
Query: 416 KGLIIQSRMSSNRMFAVIATMIAPTCFS-----------TTIKDESELWHKRYGHLGYSG 464
G ++ + + V + P+ S +T K H+ H
Sbjct: 550 DGTVLAPIVKYGDFYWVSKKYLLPSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQT 609
Query: 465 LKILAQKAMV-----KGLPMLGELDKPCEECLKGK----QHIDPFPQKSTWRAERKLQLI 515
++ + + + +D C +CL GK +HI K + Q +
Sbjct: 610 IRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQ-NSYEPFQYL 668
Query: 516 HSDICGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEK--SGALESFKKFKLLAEKESGE 573
H+DI GP+ S YFI+F D+ + WVY L ++ L+ F + +
Sbjct: 669 HTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQA 728
Query: 574 KLSCLRTDRGGEFNSREFTEFCELNGIKRQLTASYTPQQNGVSERKNRTIMNMVRCMLTE 633
+ ++ DRG E+ +R +F E NGI T + + +GV+ER NRT+++ R L
Sbjct: 729 SVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQC 788
Query: 634 KKVPREFWPEAVNWSVYIQNRSPTIAVKNITPEECWSGKKPSVNFFRIFG--CVAYAHVP 691
+P W A+ +S ++N + K + ++ FG + H P
Sbjct: 789 SGLPNHLWFSAIEFSTIVRNSLASPKSKKSARQHAGLAGL-DISTLLPFGQPVIVNDHNP 847
Query: 692 DSQRRKLDNRSIKCIYLGSSEESKAYRLYDPVSKKIIINRDVVFDESSGWDWSSGAEQME 751
+S K+ R I L S S Y +Y P KK + + V + S +Q
Sbjct: 848 NS---KIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGK----ESRLDQFN 900
Query: 752 F----FDE-----------MVDTNEVSTVPILD-EVEHQVHSETNDTSPELEDNGEASV- 794
+ FDE + +NE+ L+ E +H S+ + PE N +
Sbjct: 901 YDALTFDEDLNRLTASYQSFIASNEIQQSDDLNIESDHDFQSDI-ELHPEQPRNVLSKAV 959
Query: 795 ----SASPGVAEEERERRGRRNVQQP 816
S P E+ +R + N++ P
Sbjct: 960 SPTDSTPPSTHTEDSKRVSKTNIRAP 985
Score = 101 bits (252), Expect = 1e-20
Identities = 123/518 (23%), Positives = 233/518 (44%), Gaps = 56/518 (10%)
Query: 849 HSDPMTYDEAAKS-DHWRKAMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKL--NE 905
+ + +TY++ K + + +A E+ + + TW E K I K V + N+
Sbjct: 1234 YDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDEY-YDRKEIDPKRVINSMFIFNK 1292
Query: 906 KGEIEKHKARLVAKGYAQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAF 965
K + HKAR VA+G Q + + + + T L++A + + QLD+ SA+
Sbjct: 1293 KRD-GTHKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 1351
Query: 966 LHGKIDETVFVDQPQGYQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSD 1025
L+ I E +++ P G K+ +L K+LYGL+Q+ WY I SY +Q +
Sbjct: 1352 LYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEV 1408
Query: 1026 SDHTLYVKQGENGLAIIVSLYVDDLIYTG---NCELLISEFKASMEREFDMSDLGKMSYF 1082
+ K + + + L+VDD++ N I E K M+ + + +LG+
Sbjct: 1409 RGWSCVFKNSQ----VTICLFVDDMVLFSKNLNSNKRIIE-KLKMQYDTKIINLGESDEE 1463
Query: 1083 LGVEILQNSEGIFMCQSKYAKEVLERFGMKNS------------NP----VRNPVVPGTK 1126
+ +IL + KY + + GM+NS NP + P PG
Sbjct: 1464 IQYDILG-------LEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLY 1516
Query: 1127 LNKRGCGSEVDATQYK-----QMIGSLMYLTVS-RPDLMYSVSLVSRYMEKPTELHVQIV 1180
++++ E D + K ++IG Y+ R DL+Y ++ +++++ P++ + +
Sbjct: 1517 IDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMT 1576
Query: 1181 KRVMRYLNGTVDMGIQYRRSGSM----KLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIA 1236
+++++ T D + + +S + KL+ +D+ Y G+ KS G +++L I
Sbjct: 1577 YELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIG 1635
Query: 1237 WSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKCST--IYCDNSSTIK- 1293
S K ++ STTEAE I A+S + L + + + ++ K T + D+ STI
Sbjct: 1636 GKSTKASLTCTSTTEAE-IHAISESVPL--LNNLSYLIQELDKKPITKGLLTDSKSTISI 1692
Query: 1294 LSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCSTE 1331
+ N R++ + LRD V + + + T+
Sbjct: 1693 IISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETK 1730
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 102 bits (255), Expect = 5e-21
Identities = 116/538 (21%), Positives = 207/538 (37%), Gaps = 56/538 (10%)
Query: 323 LDSGCSNHMCGSREWFHNLDESFTTTVKLGDDSIMTVKGKGDVKLQIGGLIQVFTEVYFI 382
LDSG S + S H+ + V + + GD++ + +V
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 383 PELKNNLLSIGQLLERDLSITFKKKWCRIYHKDKGLIIQSRMSSNRMFAVIATMIAPTCF 442
P + +LLS+ +L D++ F K + + G ++ + + V + P+
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 443 S-----------TTIKDESELWHKRYGHLGYSGLKILAQKAMV-----KGLPMLGELDKP 486
S +T K H+ H ++ + + + +D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 487 CEECLKGK----QHIDPFPQKSTWRAERKLQLIHSDICGPIKPKSNSQKRYFITFIDDFC 542
C +CL GK +HI K + Q +H+DI GP+ S YFI+F D+
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQ-NSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETT 268
Query: 543 RKTWVYLLSEK--SGALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCELNGI 600
+ WVY L ++ L+ F + + + ++ DRG E+ +R +F E NGI
Sbjct: 269 KFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGI 328
Query: 601 KRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSPTIAV 660
T + + +GV+ER NRT+++ R L +P W A+ +S ++N +
Sbjct: 329 TPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKS 388
Query: 661 KNITPEECWSGKKPSVNFFRIFG--CVAYAHVPDSQRRKLDNRSIKCIYLGSSEESKAYR 718
K + ++ FG + H P+S K+ R I L S S Y
Sbjct: 389 KKSARQHAGLAGL-DISTLLPFGQPVIVNDHNPNS---KIHPRGIPGYALHPSRNSYGYI 444
Query: 719 LYDPVSKKIIINRDVVFDESSGWDWSSGAEQMEF----FDE-----------MVDTNEVS 763
+Y P KK + + V + S +Q + FDE + +NE+
Sbjct: 445 IYLPSLKKTVDTTNYVILQGK----ESRLDQFNYDALTFDEDLNRLTASYHSFIASNEIQ 500
Query: 764 TVPILD-EVEHQVHSETNDTSPELEDNGEASVSAS----PGVAEEERERRGRRNVQQP 816
L+ E +H S+ +L + +VS + P E+ +R + N++ P
Sbjct: 501 QSNDLNIESDHDFQSDIELHPEQLRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAP 558
Score = 99.0 bits (245), Expect = 8e-20
Identities = 121/520 (23%), Positives = 229/520 (43%), Gaps = 60/520 (11%)
Query: 849 HSDPMTYDEAAKS-DHWRKAMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKL--NE 905
+ + +TY++ K + + +A E+ + + TW + K I K V + N
Sbjct: 807 YDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDKY-YDRKEIDPKRVINSMFIFNR 865
Query: 906 KGEIEKHKARLVAKGYAQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAF 965
K + HKAR VA+G Q + + + + T L++A + + QLD+ SA+
Sbjct: 866 KRD-GTHKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 924
Query: 966 LHGKIDETVFVDQPQGYQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSD 1025
L+ I E +++ P G K+ +L K+LYGL+Q+ WY I SY KQ +
Sbjct: 925 LYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEV 981
Query: 1026 SDHTLYVKQGENGLAIIVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGV 1085
+ + + + + L+VDD++ F ++ + D KM Y +
Sbjct: 982 RGWSCVFENSQ----VTICLFVDDMVL----------FSKNLNSNKRIIDKLKMQYDTKI 1027
Query: 1086 EILQNSE-----GIFMCQSKYAKEVLERFGMKNS------------NP----VRNPVVPG 1124
L S+ I + KY + + GM+NS NP + P PG
Sbjct: 1028 INLGESDEEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPG 1087
Query: 1125 TKLNKRGCGSEVDATQYK-----QMIGSLMYLTVS-RPDLMYSVSLVSRYMEKPTELHVQ 1178
++++ E D + K ++IG Y+ R DL+Y ++ +++++ P++ +
Sbjct: 1088 LYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLD 1147
Query: 1179 IVKRVMRYLNGTVDMGIQYRRSGSM----KLISYTDSDYAGDVDDRKSTSGYVFMLGSGS 1234
+ +++++ T D + + +S + KL+ +D+ Y G+ KS G +++L
Sbjct: 1148 MTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKV 1206
Query: 1235 IAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKCST--IYCDNSSTI 1292
I S K ++ STTEAE I A+S + L + + + ++ K T + D+ STI
Sbjct: 1207 IGGKSTKASLTCTSTTEAE-IHAISESVPL--LNNLSYLIQELDKKPITKGLLTDSKSTI 1263
Query: 1293 K-LSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCSTE 1331
+ N R++ + LRD V + + + T+
Sbjct: 1264 SIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETK 1303
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 102 bits (255), Expect = 5e-21
Identities = 119/515 (23%), Positives = 229/515 (44%), Gaps = 50/515 (9%)
Query: 849 HSDPMTYDEAAKS-DHWRKAMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKL--NE 905
+ + +TY++ K + + +A E+ + + TW E K I K V + N+
Sbjct: 807 YDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDEY-YDRKEIDPKRVINSMFIFNK 865
Query: 906 KGEIEKHKARLVAKGYAQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAF 965
K + HKAR VA+G Q + + + + T L++A + + QLD+ SA+
Sbjct: 866 KRD-GTHKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 924
Query: 966 LHGKIDETVFVDQPQGYQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSD 1025
L+ I E +++ P G K+ +L K+LYGL+Q+ WY I SY KQ +
Sbjct: 925 LYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEV 981
Query: 1026 SDHTLYVKQGENGLAIIVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGV 1085
+ K + + + L+VDD+I + ++++++D + LG
Sbjct: 982 RGWSCVFKNSQ----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIIN-----LGE 1032
Query: 1086 EILQNSEGIFMCQSKYAKEVLERFGMKNSNPVRNPVV------PGTKLNKRGCGS----- 1134
+ I + KY + + GM+NS + P + G KL+ G
Sbjct: 1033 SDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQ 1092
Query: 1135 ---EVDATQYKQ-------MIGSLMYLTVS-RPDLMYSVSLVSRYMEKPTELHVQIVKRV 1183
E+D +YK+ +IG Y+ R DL+Y ++ +++++ P+ + + +
Sbjct: 1093 DELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYEL 1152
Query: 1184 MRYLNGTVDMGIQYRRS----GSMKLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWSS 1239
++++ T D + + ++ KL++ +D+ Y G+ KS G +++L I S
Sbjct: 1153 IQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKS 1211
Query: 1240 KKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGK--CSTIYCDNSSTIKLSKN 1297
K ++ STTEAE I A+S + L + + + ++ K + D+ STI + K+
Sbjct: 1212 TKASLTCTSTTEAE-IHAISESVPL--LNNLSYLIQELNKKPIIKGLLTDSRSTISIIKS 1268
Query: 1298 PVMHG-RSKHINVRYHFLRDLVRDGRIELVHCSTE 1331
R++ + LRD V + + + T+
Sbjct: 1269 TNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETK 1303
Score = 102 bits (254), Expect = 7e-21
Identities = 117/539 (21%), Positives = 206/539 (37%), Gaps = 58/539 (10%)
Query: 323 LDSGCSNHMCGSREWFHNLDESFTTTVKLGDDSIMTVKGKGDVKLQIGGLIQVFTEVYFI 382
LDSG S + S H+ + V + + GD++ + +V
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 383 PELKNNLLSIGQLLERDLSITFKKKWCRIYHKDKGLIIQSRMSSNRMFAVIATMIAPTCF 442
P + +LLS+ +L D++ F K + + G ++ + + V + P+
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 443 S-----------TTIKDESELWHKRYGHLGYSGLKILAQKAMV-----KGLPMLGELDKP 486
S +T K H+ H ++ + + + +D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDRSSAIDYQ 209
Query: 487 CEECLKGK----QHIDPFPQKSTWRAERKLQLIHSDICGPIKPKSNSQKRYFITFIDDFC 542
C +CL GK +HI K + Q +H+DI GP+ S YFI+F D+
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQ-NSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETT 268
Query: 543 RKTWVYLLSEK--SGALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCELNGI 600
+ WVY L ++ L+ F + + + ++ DRG E+ +R +F E NGI
Sbjct: 269 KFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGI 328
Query: 601 KRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSPTIAV 660
T + + +GV+ER NRT+++ R L +P W A+ +S ++N +
Sbjct: 329 TPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKS 388
Query: 661 KNITPEECWSGKKPSVNFFRIFG--CVAYAHVPDSQRRKLDNRSIKCIYLGSSEESKAYR 718
K + ++ FG + H P+S K+ R I L S S Y
Sbjct: 389 KKSARQHAGLAGL-DISTLLPFGQPVIVNDHNPNS---KIHPRGIPGYALHPSRNSYGYI 444
Query: 719 LYDPVSKKIIINRDVVFDESSGWDWSSGAEQMEF----FDE-----------MVDTNEVS 763
+Y P KK + + V + S +Q + FDE + +NE+
Sbjct: 445 IYLPSLKKTVDTTNYVILQGK----ESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQ 500
Query: 764 TVPILD-EVEHQVHSETNDTSPELEDNGEASV-----SASPGVAEEERERRGRRNVQQP 816
L+ E +H S+ + PE N + S P E+ +R + N++ P
Sbjct: 501 QSDDLNIESDHDFQSDI-ELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAP 558
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 102 bits (255), Expect = 5e-21
Identities = 110/504 (21%), Positives = 196/504 (38%), Gaps = 43/504 (8%)
Query: 323 LDSGCSNHMCGSREWFHNLDESFTTTVKLGDDSIMTVKGKGDVKLQIGGLIQVFTEVYFI 382
LDSG S + S H+ + V + + GD++ + +V
Sbjct: 460 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 519
Query: 383 PELKNNLLSIGQLLERDLSITFKKKWCRIYHKDKGLIIQSRMSSNRMFAVIATMIAPTCF 442
P + +LLS+ +L D++ F K + + G ++ + + V + P+
Sbjct: 520 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVQYGDFYWVSKRYLLPSNI 576
Query: 443 S-----------TTIKDESELWHKRYGHLGYSGLKILAQKAMV-----KGLPMLGELDKP 486
S +T K H+ H ++ + + + +D
Sbjct: 577 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 636
Query: 487 CEECLKGK----QHIDPFPQKSTWRAERKLQLIHSDICGPIKPKSNSQKRYFITFIDDFC 542
C +CL GK +HI K + Q +H+DI GP+ S YFI+F D+
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQ-NSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETT 695
Query: 543 RKTWVYLLSEK--SGALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCELNGI 600
+ WVY L ++ L+ F + + + ++ DRG E+ +R +F E NGI
Sbjct: 696 KFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGI 755
Query: 601 KRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSPTIAV 660
T + + +GV+ER NRT+++ R L +P W A+ +S ++N +
Sbjct: 756 TPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKS 815
Query: 661 KNITPEECWSGKKPSVNFFRIFG--CVAYAHVPDSQRRKLDNRSIKCIYLGSSEESKAYR 718
K + ++ FG + H P+S K+ R I L S S Y
Sbjct: 816 KKSARQHAGLAGL-DISTLLPFGQPVIVNDHNPNS---KIHPRGIPGYALHPSRNSYGYI 871
Query: 719 LYDPVSKKIIINRDVVFDESSGWDWSSGAEQMEF----FDEMVDTNEVSTVPILDEVEHQ 774
+Y P KK + + V + S +Q + FDE ++ S + E Q
Sbjct: 872 IYLPSLKKTVDTTNYVILQGK----ESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQ 927
Query: 775 VHSETNDTSPELEDNGEASVSASP 798
E+ND + E + + ++ + P
Sbjct: 928 ---ESNDLNIESDHDFQSDIELHP 948
Score = 102 bits (255), Expect = 5e-21
Identities = 120/515 (23%), Positives = 228/515 (43%), Gaps = 50/515 (9%)
Query: 849 HSDPMTYDEAAKS-DHWRKAMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKL--NE 905
+ + +TY++ K + + +A E+ + + TW E K I K V + N+
Sbjct: 1234 YDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDEY-YDRKEIDPKRVINSMFIFNK 1292
Query: 906 KGEIEKHKARLVAKGYAQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAF 965
K + HKAR VA+G Q T + + + T L++A + + QLD+ SA+
Sbjct: 1293 KRD-GTHKARFVARGDIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 1351
Query: 966 LHGKIDETVFVDQPQGYQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSD 1025
L+ I E +++ P G K+ +L K+ YGL+Q+ WY I SY KQ +
Sbjct: 1352 LYADIKEELYIRPPPHL---GMNDKLIRLKKSHYGLKQSGANWYETIKSYLIKQCGMEEV 1408
Query: 1026 SDHTLYVKQGENGLAIIVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGV 1085
+ K + + + L+VDD+I + ++++++D + LG
Sbjct: 1409 RGWSCVFKNSQ----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIIN-----LGE 1459
Query: 1086 EILQNSEGIFMCQSKYAKEVLERFGMKNSNPVRNPVV------PGTKLNKRGCGS----- 1134
+ I + KY + + GM+NS + P + G KL+ G
Sbjct: 1460 SDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQ 1519
Query: 1135 ---EVDATQYKQ-------MIGSLMYLTVS-RPDLMYSVSLVSRYMEKPTELHVQIVKRV 1183
E+D +YK+ +IG Y+ R DL+Y ++ +++++ P+ + + +
Sbjct: 1520 DELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYEL 1579
Query: 1184 MRYLNGTVDMGIQYRRS----GSMKLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWSS 1239
++++ T D + + ++ KL++ +D+ Y G+ KS G +F+L I S
Sbjct: 1580 IQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKS 1638
Query: 1240 KKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGK--CSTIYCDNSSTIKLSKN 1297
K ++ STTEAE I A+S + L + + + ++ K + D+ STI + K+
Sbjct: 1639 TKASLTCTSTTEAE-IHAISESVPL--LNNLSYLIQELNKKPIIKGLLTDSRSTISIIKS 1695
Query: 1298 PVMHG-RSKHINVRYHFLRDLVRDGRIELVHCSTE 1331
R++ + LRD V + + + T+
Sbjct: 1696 TNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETK 1730
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 102 bits (254), Expect = 7e-21
Identities = 117/539 (21%), Positives = 206/539 (37%), Gaps = 58/539 (10%)
Query: 323 LDSGCSNHMCGSREWFHNLDESFTTTVKLGDDSIMTVKGKGDVKLQIGGLIQVFTEVYFI 382
LDSG S + S H+ + V + + GD++ + +V
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 383 PELKNNLLSIGQLLERDLSITFKKKWCRIYHKDKGLIIQSRMSSNRMFAVIATMIAPTCF 442
P + +LLS+ +L D++ F K + + G ++ + + V + P+
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 443 S-----------TTIKDESELWHKRYGHLGYSGLKILAQKAMV-----KGLPMLGELDKP 486
S +T K H+ H ++ + + + +D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 487 CEECLKGK----QHIDPFPQKSTWRAERKLQLIHSDICGPIKPKSNSQKRYFITFIDDFC 542
C +CL GK +HI K + Q +H+DI GP+ S YFI+F D+
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQ-NSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETT 268
Query: 543 RKTWVYLLSEK--SGALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCELNGI 600
+ WVY L ++ L+ F + + + ++ DRG E+ +R +F E NGI
Sbjct: 269 KFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGI 328
Query: 601 KRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSPTIAV 660
T + + +GV+ER NRT+++ R L +P W A+ +S ++N +
Sbjct: 329 TPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKS 388
Query: 661 KNITPEECWSGKKPSVNFFRIFG--CVAYAHVPDSQRRKLDNRSIKCIYLGSSEESKAYR 718
K + ++ FG + H P+S K+ R I L S S Y
Sbjct: 389 KKSARQHAGLAGL-DISTLLPFGQPVIVNDHNPNS---KIHPRGIPGYALHPSRNSYGYI 444
Query: 719 LYDPVSKKIIINRDVVFDESSGWDWSSGAEQMEF----FDE-----------MVDTNEVS 763
+Y P KK + + V + S +Q + FDE + +NE+
Sbjct: 445 IYLPSLKKTVDTTNYVILQGK----ESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQ 500
Query: 764 TVPILD-EVEHQVHSETNDTSPELEDNGEASV-----SASPGVAEEERERRGRRNVQQP 816
L+ E +H S+ + PE N + S P E+ +R + N++ P
Sbjct: 501 QSDDLNIESDHDFQSDI-ELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAP 558
Score = 99.4 bits (246), Expect = 6e-20
Identities = 121/516 (23%), Positives = 226/516 (43%), Gaps = 52/516 (10%)
Query: 849 HSDPMTYDEAAKS-DHWRKAMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKL--NE 905
+ + +TY++ K + + +A E+ + + TW + K I K V + N
Sbjct: 807 YDEAITYNKDIKEKEKYIQAYHKEVNQLLKMKTWD-TDRYYDRKEIDPKRVINSMFIFNR 865
Query: 906 KGEIEKHKARLVAKGYAQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAF 965
K + HKAR VA+G Q + + + T L++A + + QLD+ SA+
Sbjct: 866 KRD-GTHKARFVARGDIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAY 924
Query: 966 LHGKIDETVFVDQPQGYQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSD 1025
L+ I E +++ P G K+ +L K+LYGL+Q+ WY I SY KQ +
Sbjct: 925 LYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEV 981
Query: 1026 SDHTLYVKQGENGLAIIVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGV 1085
+ K + + + L+VDD+I + ++++++D + LG
Sbjct: 982 RGWSCVFKNSQ----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIIN-----LGE 1032
Query: 1086 EILQNSEGIFMCQSKYAKEVLERFGMKNS------------NP----VRNPVVPGTKLNK 1129
+ I + KY + + GM+NS NP + P PG +++
Sbjct: 1033 SDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQ 1092
Query: 1130 RGCGSEVDATQYK-----QMIGSLMYLTVS-RPDLMYSVSLVSRYMEKPTELHVQIVKRV 1183
+ E D + K ++IG Y+ R DL+Y ++ +++++ P++ + + +
Sbjct: 1093 QELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYEL 1152
Query: 1184 MRYLNGTVDMGIQYRRSGSM----KLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWSS 1239
++++ T D + + +S + KL+ +D+ Y G+ KS G +++L I S
Sbjct: 1153 IQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKS 1211
Query: 1240 KKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGK---CSTIYCDNSSTIK-LS 1295
K ++ STTEAE I A+S + + L L L Q K + D+ STI +
Sbjct: 1212 TKASLTCTSTTEAE-IHAIS---ESVPLLNNLSHLVQELNKKPITKGLLTDSKSTISIII 1267
Query: 1296 KNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCSTE 1331
N R++ + LRD V + + + T+
Sbjct: 1268 SNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETK 1303
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 95.5 bits (236), Expect = 9e-19
Identities = 47/103 (45%), Positives = 65/103 (62%)
Query: 847 SIHSDPMTYDEAAKSDHWRKAMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEK 906
+I +P + A K W +AM E+ A+ RN TW L P +G KWV+KTKL+
Sbjct: 23 TIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSD 82
Query: 907 GEIEKHKARLVAKGYAQQQGIDFTEVFAPVARWDTIRTILAIA 949
G +++ KARLVAKG+ Q++GI F E ++PV R TIRTIL +A
Sbjct: 83 GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 64.3 bits (155), Expect = 2e-09
Identities = 28/78 (35%), Positives = 50/78 (63%)
Query: 1149 MYLTVSRPDLMYSVSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQYRRSGSMKLISY 1208
MYLT++RPDL ++V+ +S++ +Q V +V+ Y+ GTV G+ Y + ++L ++
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 1209 TDSDYAGDVDDRKSTSGY 1226
DSD+A D R+S +G+
Sbjct: 61 ADSDWASCPDTRRSVTGF 78
>M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710
(ORF120)
Length = 120
Score = 63.9 bits (154), Expect = 3e-09
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 620 NRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSPTIAVKNITPEECWSGKKPSVNFF 679
NRTI+ VR ML E +P+ F +A N +V+I N+ P+ A+ P+E W P+ ++
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 680 RIFGCVAYAHVPDSQ 694
R FGCVAY H + +
Sbjct: 62 RRFGCVAYIHCDEGK 76
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 55.1 bits (131), Expect = 1e-06
Identities = 50/193 (25%), Positives = 82/193 (41%), Gaps = 10/193 (5%)
Query: 482 ELDKPCEECLKGK--QHIDPFPQKSTWRAERKLQLIHSDICGPIKPKSNSQKRYFITFID 539
E + C++C K K +H P T E + D GP+ PKS + Y +T I
Sbjct: 934 EYVRKCQKCQKAKTTKHTKT-PMTITETPEHAFDRVVVDTIGPL-PKSENGNEYAVTLIC 991
Query: 540 DFCRKTWVYLLSEKSGALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCELNG 599
D + ++ KS + F+ K K TD G E+ + T+ C+
Sbjct: 992 DLTKYLVAIPIANKSAKTVAKAIFESFILKYGPMKTFI--TDMGTEYKNSIITDLCKYLK 1049
Query: 600 IKRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSPTIA 659
IK + ++ Q GV ER +RT+ +R ++ K + W + + VY N + ++
Sbjct: 1050 IKNITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKTDWDVW---LQYFVYCFNTTQSM- 1105
Query: 660 VKNITPEECWSGK 672
V N P E G+
Sbjct: 1106 VHNYCPYELVFGR 1118
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 53.1 bits (126), Expect = 5e-06
Identities = 47/171 (27%), Positives = 76/171 (43%), Gaps = 11/171 (6%)
Query: 485 KPCEECLKGKQHIDPFPQKSTWRAERKLQLIHSDICGPIKPKSNSQKRYFITFIDDFCRK 544
+ C +CL H + +R L+++ D+ S RY +T ID F +
Sbjct: 1508 RTCAKCLCANDHSKLTSSLTPYRMTFPLEIVACDLMDV--GLSVQGNRYILTIIDLFTKY 1565
Query: 545 TWVYLLSEKSG--ALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCELNGIKR 602
+ +K L++F + + E KL TD+G EF + F +F + I+
Sbjct: 1566 GTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLL---TDQGKEFVNGLFAQFTHMLKIEH 1622
Query: 603 QLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQN 653
T Y + NG ER N+TIM++ M + VP E W + V ++VY N
Sbjct: 1623 ITTKGYNSRANGAVERFNKTIMHI---MKKKTAVPME-WDDQVVYAVYAYN 1669
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 48.1 bits (113), Expect = 2e-04
Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 20/221 (9%)
Query: 459 HLGYSGLKILAQKAMV----KGLPM-LGELDKPCEECLKGKQHIDPFPQKSTWRAERKLQ 513
H G+ G+ + QKA +GL + + + C C + + P E +
Sbjct: 791 HEGHPGIVQMKQKARSFVFWRGLDSDIENMVRHCNNCQENSKMPRVVPLNPWPVPEAPWK 850
Query: 514 LIHSDICGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGE 573
IH D GP+ Y + +D + V L + ++ + LL E S
Sbjct: 851 RIHIDFAGPLNGC------YLLVVVDAKTKYAEVKL----TRSISAVTTIDLLEEIFSIH 900
Query: 574 KL-SCLRTDRGGEFNSREFTEFCELNGIKRQLTASYTPQQNGVSERKNRTIMNMVRCMLT 632
+ +D G + S F + C+ +GI+ + +A Y P+ NG +ER T+ + +
Sbjct: 901 GYPETIISDNGTQLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAERFVDTLKRGIAKIKG 960
Query: 633 EKKVPREFWPEAVNWSVYIQNRSPTIAVKNITPEECWSGKK 673
E V ++ +N + +P A+ TP EC G+K
Sbjct: 961 EGSVNQQI----LNKFLISYRNTPHSALNGSTPAECHFGRK 997
>M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300
(ORF145a) (ORF1451)
Length = 145
Score = 47.8 bits (112), Expect = 2e-04
Identities = 25/77 (32%), Positives = 38/77 (48%), Gaps = 3/77 (3%)
Query: 445 TIKDESELWHKRYGHLGYSGLKILAQKAMVKGLPMLGELDKPCEECLKGKQHIDPFPQKS 504
T KDE+ LWH R H+ G+++L +K + + K CE+C+ GK H F
Sbjct: 64 TAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSL--KFCEDCIYGKTHRVNF-STG 120
Query: 505 TWRAERKLQLIHSDICG 521
+ L +HSD+ G
Sbjct: 121 QHTTKNPLDYVHSDLWG 137
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 45.4 bits (106), Expect = 0.001
Identities = 63/227 (27%), Positives = 90/227 (38%), Gaps = 16/227 (7%)
Query: 459 HLGYSGLKILAQKA-----MVKGLPMLGELDKPCEECLKGKQHIDPFPQKSTWRAERKLQ 513
HL +S +K L +++ M+ L + + C+ C + Q + R R
Sbjct: 852 HLSFSKMKALLERSHSPYYMLNRDRTLKNITETCKACAQVNASKSAVKQGTRVRGHRPGT 911
Query: 514 LIHSDICGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGE 573
D IKP K Y + FID F W+ K + K KLL E
Sbjct: 912 HWEIDFT-EIKPGLYGYK-YLLVFIDTF--SGWIEAFPTKKETAKVVTK-KLLEEIFPRF 966
Query: 574 KL-SCLRTDRGGEFNSREFTEFCELNGIKRQLTASYTPQQNGVSERKNRTIMNMVRCMLT 632
+ L TD G F S+ +L GI +L +Y PQ +G ER NRTI + LT
Sbjct: 967 GMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETL-TKLT 1025
Query: 633 EKKVPREFWPEAVNWSVYIQNRSPTIAVKNITPEECWSGKKPS-VNF 678
R+ W + ++Y +P +TP E G P VNF
Sbjct: 1026 LATGSRD-WVLLLPLALYRARNTP--GPHGLTPYEILYGAPPPLVNF 1069
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,878,131
Number of Sequences: 164201
Number of extensions: 6679657
Number of successful extensions: 17829
Number of sequences better than 10.0: 144
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 17577
Number of HSP's gapped (non-prelim): 225
length of query: 1331
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1209
effective length of database: 39,941,532
effective search space: 48289312188
effective search space used: 48289312188
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0112.11