BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0112.1
(547 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YM30_YEAST (Q03795) Hypothetical 60.0 kDa protein in IMP1-HLJ1 i... 60 1e-08
YHJX_ECOLI (P37662) Hypothetical protein yhjX 52 4e-06
Y38K_THETE (P05715) Hypothetical 38 kDa protein in 23S RNA operon 39 0.027
ITR1_SCHPO (Q10286) Myo-inositol transporter 1 39 0.045
GTR1_LEIDO (Q01440) Membrane transporter D1 36 0.29
OXLT_OXAFO (Q51330) Oxalate:formate antiporter (OFA) (Oxalate:fo... 35 0.39
MVIN_SYNY3 (Q55179) Virulence factor mviN homolog 35 0.39
CSBX_BACSU (O05390) Alpha-ketoglutarate permease 34 1.1
DRA_HUMAN (P40879) Chloride anion exchanger (DRA protein) (Down-... 33 1.5
Y522_HAEIN (Q57256) Hypothetical protein HI0522 33 2.5
Y443_MYCGE (P47681) Hypothetical protein MG443 32 3.3
GLXA_RHIME (O87389) HTH-type transcriptional regulator glxA 32 3.3
FACG_HUMAN (O15287) Fanconi anemia group G protein (FACG protein... 32 4.3
BAP3_YEAST (P41815) Valine amino-acid permease (Branched-chain a... 32 4.3
IRKC_MOUSE (P52187) ATP-sensitive inward rectifier potassium cha... 32 5.6
CTF5_MOUSE (Q80ZM8) Protein C20orf155 homolog 32 5.6
CTF5_HUMAN (Q9UJA2) Protein C20orf155 (GCD10 protein homolog) 32 5.6
IRKC_HUMAN (Q14500) ATP-sensitive inward rectifier potassium cha... 31 7.3
HPPA_RHILO (Q983A3) Pyrophosphate-energized proton pump (EC 3.6.... 31 7.3
NU5M_ARATH (P29388) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 31 9.5
>YM30_YEAST (Q03795) Hypothetical 60.0 kDa protein in IMP1-HLJ1
intergenic region
Length = 547
Score = 60.1 bits (144), Expect = 1e-08
Identities = 118/519 (22%), Positives = 199/519 (37%), Gaps = 73/519 (14%)
Query: 27 SGNNYTFSNYSHALKSLMHLTQLQLNNLSVAKDVGKAF-GLLAGLSSDFLPTWAILLIGS 85
+G Y FS Y+ L S H+ + LS + +G + G+LAG+ D P + L IGS
Sbjct: 32 AGTPYLFSFYAPQLLSKCHIPVSASSKLSFSLTIGSSLMGILAGIVVDRSPKLSCL-IGS 90
Query: 86 VEGLIGYGVQWLVVGQFINPLPYWQMCVFLCLGGNSTTWMNTAVLVTSIRNFRRNRGPVS 145
+ I Y + L + + + L +G S + +V + NF ++RG
Sbjct: 91 MCVFIAYLILNLCYKHEWSSTFLISLSLVL-IGYGSVSGFYASVKCANT-NFPQHRGTAG 148
Query: 146 GILKGFVGLSTAIFTNLCSALFADDPASFLLMLALIPFAVCIAGVFFLREVPPAKTVTAE 205
GLS +F+ LCS LF ++ + L + + + G F L AE
Sbjct: 149 AFPVSLYGLSGMVFSYLCSKLFGENIEHVFIFLMVACGCMILVGYFSLDIFS-----NAE 203
Query: 206 DDSEEASYFGVCNAVAV---VVAVYLLAYGFVPSPSSLVSRVFVAVLLVLLASPVGIPVY 262
D + + + +V +Y + ++ SP V +SP Y
Sbjct: 204 GDDASIKEWELQKSRETDDNIVPLYENSNDYIGSP-------------VRSSSPATYETY 250
Query: 263 SYFKGRKSKSNRDV--EGQRVTEPLLIQSDDKENGAVTVAAEEEVVVVKGRPAVGEEHTI 320
+ + S + Q PLL S E+E + VG E++
Sbjct: 251 ALSDNFQETSEFFALEDRQLSNRPLLSPSSPH----TKYDFEDENT---SKNTVG-ENSA 302
Query: 321 WEAMRSVDFWILFTSFLCGVGTGLAVMNNMGQIGL-ALGY---TDVS------------- 363
++MR F L +S G L ++ +G + + ++G+ VS
Sbjct: 303 QKSMRLHVFQSLKSSTFIGYYIVLGILQGVGLMYIYSVGFMVQAQVSTPPLNQLPINAEK 362
Query: 364 ---LFVSLTSIWGFFGRIISGSVSELFIKKAATPRPLWN---AASQILMAVGYI------ 411
L V+L S+ F GR+ SG +S+ +KK R LWN A+ + +A I
Sbjct: 363 IQSLQVTLLSLLSFCGRLSSGPISDFLVKKFKAQR-LWNIVIASLLVFLASNKISHDFSS 421
Query: 412 -----LLAMALPGSLYIGSIVVGICYGVRLAITVPTASELFGLKYYGLIYNILILNLPLG 466
L A ++ + S + G +GV ++ FG Y ++ +L
Sbjct: 422 IEDPSLRASKSFKNISVCSAIFGYSFGVLFGTFPSIVADRFGTNGYSTLWGVLTTGGVFS 481
Query: 467 SFLFSGLLAGILYDREATATEGGGNTCVGGHCYRLVFIV 505
+F+ +L D +A + GN G CY F+V
Sbjct: 482 VSVFTDILG---RDFKANTGDDDGNCKKGVLCYSYTFMV 517
>YHJX_ECOLI (P37662) Hypothetical protein yhjX
Length = 402
Score = 52.0 bits (123), Expect = 4e-06
Identities = 48/173 (27%), Positives = 79/173 (44%), Gaps = 13/173 (7%)
Query: 300 AAEEEVVVVKGRPAVGEEHTIWEAMRSVDFWILFTSFLCGVGTGLAVMNNMGQIGLALGY 359
A ++EV G V +++T+ E+MR +W+L FL +GL V+ I +L +
Sbjct: 189 APKQEVKTSNG--VVEKDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDIAQSLAH 246
Query: 360 TDV---SLFVSLTSIWGFFGRIISGSVSELFIKKAATPRPLWNAASQILMAVGYILLAMA 416
DV + V++ SI GR++ G +S+ K A R + Q++ VG L A
Sbjct: 247 LDVVSAANAVTVISIANLSGRLVLGILSD----KIARIRVI--TIGQVISLVGMAALLFA 300
Query: 417 -LPGSLYIGSIV-VGICYGVRLAITVPTASELFGLKYYGLIYNILILNLPLGS 467
L + +I V +G + + SE FGL Y ++ L +GS
Sbjct: 301 PLNAVTFFAAIACVAFNFGGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGS 353
>Y38K_THETE (P05715) Hypothetical 38 kDa protein in 23S RNA operon
Length = 373
Score = 39.3 bits (90), Expect = 0.027
Identities = 47/218 (21%), Positives = 86/218 (38%), Gaps = 43/218 (19%)
Query: 278 GQRVTEPLLIQSDDKENGAVTVAAEEEVVVV---------KGRPAVGEEHTIWEAMRSVD 328
G V PL+ + + + E +V+V +G V + +A
Sbjct: 141 GSAVANPLIASVGNYREATLAIGVVELLVLVPLSLLVDYPRGLSGVSPRRALLDAR---- 196
Query: 329 FWILFTSFLCGVGTGLAVMNNMGQIGLALGYTDVSLFVSLTSIWGFFGRIISGSVSELFI 388
FW L+ S+ G + +++ + L +G ++ L SL + R + G++++
Sbjct: 197 FWTLYASYALGA---VPLLSLASSLHLLVGGGELVLLASLYPLLVGAARPLLGALADK-- 251
Query: 389 KKAATPRPLWNAASQILMAVGYILLAMALPGSL-------YIGSIVVGICYGVRLAITVP 441
W I Y+ LA++ G+L +G I VG+ G + + +
Sbjct: 252 ---------WGPLKAI-----YLALAVSAAGTLAMLAGLDIVGVIAVGLTGGAIIILYLN 297
Query: 442 TASELFGLKY----YGLIYNILILNLPLGSFLFSGLLA 475
+S +FG KY GL+Y + LGS F + A
Sbjct: 298 LSSRIFGPKYATANNGLLYTAKAVGGTLGSAAFGYVYA 335
Score = 34.7 bits (78), Expect = 0.66
Identities = 30/94 (31%), Positives = 45/94 (46%), Gaps = 10/94 (10%)
Query: 400 AASQILMAVGYILLAMAL-PGSLYI----GSIVVGICYGVRLAITVPTASELFGLKYYGL 454
A S +L A+G+I A+A P LY+ GS G+ YG+ + V + GL
Sbjct: 75 ALSAVLSALGFIGAALAPGPALLYLAWGLGSAGEGVLYGIAFNLAVKWYQDKLGLAT--- 131
Query: 455 IYNILILNLPLGSFLFSGLLAGILYDREATATEG 488
++ L LGS + + L+A + REAT G
Sbjct: 132 --GLVSLGFGLGSAVANPLIASVGNYREATLAIG 163
>ITR1_SCHPO (Q10286) Myo-inositol transporter 1
Length = 575
Score = 38.5 bits (88), Expect = 0.045
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 22/176 (12%)
Query: 313 AVGEEHTIWEAMRS--VDFWILFTSFLCGVGTGLAVMNNMGQIGLALGYTDVSL------ 364
++ E H + + + V W+ +F G+G GL + G I AL SL
Sbjct: 67 SLSEPHALNDTVEDQPVSKWVWVLAFAAGIG-GLLFGYDTGVISGALVVIGTSLGGHELT 125
Query: 365 ------FVSLTSIWGFFGRIISGSVSELFIKKAATPRPLWNAASQILMAVGYILLAMALP 418
S TS+ G II+G++++ F +K A + I++ VG I+ A
Sbjct: 126 NGGKEFITSATSLGALLGGIIAGALADFFGRKPVI------AIASIIIIVGSIVQVTAHH 179
Query: 419 -GSLYIGSIVVGICYGVRLAITVPTASELFGLKYYGLIYNILILNLPLGSFLFSGL 473
+ +G V+G G+ I SE+ K G + I +L + G + G+
Sbjct: 180 LWHMIVGRFVIGWGVGIASLIIPLYLSEIAPSKIRGRLVIIYVLLITAGQVIAYGI 235
>GTR1_LEIDO (Q01440) Membrane transporter D1
Length = 547
Score = 35.8 bits (81), Expect = 0.29
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 10/144 (6%)
Query: 336 FLCGVGTGL---AVMNNMGQIGLALGYTDVSLFVSLTSIWGFFGRIISGSVSELFIKKAA 392
FL G TG+ A+ G + +L V++ F G ISG +S F ++
Sbjct: 14 FLFGYDTGVINAALFQMKDHFGFSEHSWQYALIVAIAIAGAFVGAFISGFISAAFGRRPC 73
Query: 393 TPRPLWNAASQILMAVGYILLAMALPGSLYIGS-IVVGICYGVRLAITVPTASELFGLKY 451
A + L +G +L+ A + + S ++VG+ G+ A +E+ K+
Sbjct: 74 I------AVADALFVIGSVLMGAAPNVEVVLVSRVIVGLAIGISSATIPVYLAEVTSPKH 127
Query: 452 YGLIYNILILNLPLGSFLFSGLLA 475
G + L L G F+ +G A
Sbjct: 128 RGATIVLNNLFLTGGQFVAAGFTA 151
>OXLT_OXAFO (Q51330) Oxalate:formate antiporter (OFA)
(Oxalate:formate antiport protein) (Oxalate:formate
exchange protein)
Length = 417
Score = 35.4 bits (80), Expect = 0.39
Identities = 48/210 (22%), Positives = 75/210 (34%), Gaps = 47/210 (22%)
Query: 322 EAMRSVDFWILFTSFLCGVGTGLAVMNNMGQIGLALGYTDVSLFVSLTSIWGFFGRIISG 381
E +R+ FW+L+T+F GL ++ N G +LG L + +
Sbjct: 214 EMLRTPQFWVLWTAFFSVNFGGLLLVANSVPYGRSLGLAAGVLTIGV------------- 260
Query: 382 SVSELFIKKAATPRPLWNAAS---------QILMAVGYILLAM-----ALPGSLYIGSIV 427
S+ LF RP W S ++ + ++LA+ AL +I +
Sbjct: 261 SIQNLF---NGGCRPFWGFVSDKIGRYKTMSVVFGINAVVLALFPTIAALGDVAFIAMLA 317
Query: 428 VG-ICYGVRLAITVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGILYDREATAT 486
+ +G A+ T S++FG Y Y S GL A I AT
Sbjct: 318 IAFFTWGGSYALFPSTNSDIFGTAYSARNYGFFWAAKATASIFGGGLGAAI-------AT 370
Query: 487 EGGGNTCVGGHCYRLVFIVMAAACIVGFFL 516
G NT F++ A + F L
Sbjct: 371 NFGWNT---------AFLITAITSFIAFAL 391
>MVIN_SYNY3 (Q55179) Virulence factor mviN homolog
Length = 533
Score = 35.4 bits (80), Expect = 0.39
Identities = 21/62 (33%), Positives = 31/62 (49%), Gaps = 1/62 (1%)
Query: 60 VGKAFGLLAGLSSDFLPTWAILLIGSVEGLIGYGVQWLVVGQFINPLPYWQMCVFLCLGG 119
+G FG L LP+ + LL S+ ++G GV +GQ +N PYW + L GG
Sbjct: 148 IGIGFGTLNAADQYLLPSISPLL-SSITVILGLGVAVWQLGQQLNTEPYWLLGSLLLAGG 206
Query: 120 NS 121
+
Sbjct: 207 TT 208
>CSBX_BACSU (O05390) Alpha-ketoglutarate permease
Length = 435
Score = 33.9 bits (76), Expect = 1.1
Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 29/186 (15%)
Query: 309 KGRPAVGEEHTIWEAMRSVDFWILFTSFLCGVGTGLAVMNNMGQIGLAL---------GY 359
K P ++ W+ + S F I+F + G+G + +N +GQ G A+ GY
Sbjct: 201 KFTPIQKQDQPKWKEL-SKAFTIMFENPKVGIGGVVKTINAIGQFGFAIFLPTYLARYGY 259
Query: 360 TDVSLFVSLTSIWG--FFGRIISGSVSELFIKKAATPRPLWNAASQILMAVGYILLAMA- 416
+ VS ++ IWG FF I+ I A + W VG + +A
Sbjct: 260 S-VSEWL---QIWGTLFFVNIVFN-----IIFGAVGDKLGWRNTVMWFGGVGCGIFTLAL 310
Query: 417 -----LPGSLYIGSIVVGICYGVRLAITVPTASELFGL--KYYGLIYNILILNLPLGSFL 469
L G Y +++ CYG LA VP ++ L L G ++L L L +F+
Sbjct: 311 YYTPQLIGHQYWVLMIIACCYGAALAGYVPLSALLPTLAPDNKGAAMSVLNLGFGLCAFI 370
Query: 470 FSGLLA 475
G+++
Sbjct: 371 APGIVS 376
>DRA_HUMAN (P40879) Chloride anion exchanger (DRA protein)
(Down-regulated in adenoma)
Length = 764
Score = 33.5 bits (75), Expect = 1.5
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 428 VGICYGVRL---AITVPTASELFGLKY-YGLIYNILILNLPLGSFL---FSGLLAGILYD 480
VG C+G+ + A+ AS ++ LKY Y L N ++ L LG+ + F G
Sbjct: 340 VGDCFGIAMVAFAVAFSVAS-VYSLKYDYPLDGNQELIALGLGNIVCGVFRGFAGSTALS 398
Query: 481 REATATEGGGNTCVGGHCYRLVFIVMAAACIVGFFL 516
R A GG T + G ++ +++ A +GF L
Sbjct: 399 RSAVQESTGGKTQIAGLIGAIIVLIVVLA--IGFLL 432
>Y522_HAEIN (Q57256) Hypothetical protein HI0522
Length = 218
Score = 32.7 bits (73), Expect = 2.5
Identities = 38/188 (20%), Positives = 78/188 (41%), Gaps = 31/188 (16%)
Query: 319 TIWEAMRSVDFWILFTSFLCGVGTGLAVMNNMG-------------QIGLALGYTDVSLF 365
++W A +LF + G+G GL V++ +G Q +G++ +
Sbjct: 17 SLWTAQYKTISILLFALSILGIGDGLIVLSGLGSTPWTVLSQGIAIQTNFDIGWSSFLIS 76
Query: 366 VSLTSIWG------FFGRIISGSVSELFI----KKAATPRPLWNAASQILMAVGYILLAM 415
++ +W G +++ V LF+ K A P L++ L+ +
Sbjct: 77 CAVMLVWKPLKLRLGLGTLLNIIVIALFLGITTKILAPPTALFSRMIFCLIGILLYGFGT 136
Query: 416 ALPGSLYIGS-----IVVGICYGVRLAITVPTASELFGLKYYGLIYNILILNLPLGSFLF 470
AL + ++G+ ++VGIC L+I V +S + G + ++ LG+ LF
Sbjct: 137 ALYLTCHLGAGPRDGLMVGICQRFHLSINVVRSSLEISVCLLGFLLGGVV---GLGTVLF 193
Query: 471 SGLLAGIL 478
+ + ++
Sbjct: 194 ATSIGSVV 201
>Y443_MYCGE (P47681) Hypothetical protein MG443
Length = 395
Score = 32.3 bits (72), Expect = 3.3
Identities = 33/133 (24%), Positives = 55/133 (40%), Gaps = 23/133 (17%)
Query: 365 FVSLTSIWGFFGRIISGSVSELFIKKAATPRPLWNAASQILMAVGYI--LLAMALPGSLY 422
FV ++++GF II GS + + + T W AA + + G++ L + G++
Sbjct: 133 FVVASNVFGFLISIIPGSDNLPPMLASITDTNFWKAAKDLNQSAGFVPFLWSDTSQGNVI 192
Query: 423 IGSIVVGICYGVRLAITVPTASELFG--------LKYYGLIYN-------------ILIL 461
I + + YG I+V L G +YY N ILI+
Sbjct: 193 ISTFIYAAIYGFYNGISVSLLYILGGSAGGADFLTQYYARKKNRSVGSILFYVNSFILII 252
Query: 462 NLPLGSFLFSGLL 474
+ +GSF+ LL
Sbjct: 253 AILIGSFVAGSLL 265
>GLXA_RHIME (O87389) HTH-type transcriptional regulator glxA
Length = 324
Score = 32.3 bits (72), Expect = 3.3
Identities = 16/45 (35%), Positives = 23/45 (50%)
Query: 113 VFLCLGGNSTTWMNTAVLVTSIRNFRRNRGPVSGILKGFVGLSTA 157
VF+C GG T W +T+ T++R R + GI G L+ A
Sbjct: 80 VFVCAGGEPTDWADTSASHTTLRRLSRLGIRIGGISSGAFVLAAA 124
>FACG_HUMAN (O15287) Fanconi anemia group G protein (FACG protein)
(DNA-repair protein XRCC9)
Length = 622
Score = 32.0 bits (71), Expect = 4.3
Identities = 27/101 (26%), Positives = 39/101 (37%), Gaps = 13/101 (12%)
Query: 22 WIQSISGNNYTFSNYSHALKSLMHLTQLQLNNLSVAKDVGKAFGLLAGLSSDFLPTWAIL 81
W+Q + S +S L+ L T + K+ G AF G SD A L
Sbjct: 463 WVQ-LGAQKVAISEFSRCLELLFRATPEE-------KEQGAAFNCEQGCKSD-----AAL 509
Query: 82 LIGSVEGLIGYGVQWLVVGQFINPLPYWQMCVFLCLGGNST 122
LI G++W+ GQ L + + V +C G T
Sbjct: 510 QQLRAAALISRGLEWVASGQDTKALQDFLLSVQMCPGNRDT 550
>BAP3_YEAST (P41815) Valine amino-acid permease (Branched-chain
amino-acid permease 3)
Length = 604
Score = 32.0 bits (71), Expect = 4.3
Identities = 58/247 (23%), Positives = 92/247 (36%), Gaps = 38/247 (15%)
Query: 302 EEEVVVVKGRPAVGEEHTIWEAMRSVDFWILFTSFLCGVGTGLAVMNNMGQI-----GLA 356
EE+ + G ++ + + ++M+S ++ S G+GTGL V N G L
Sbjct: 68 EEDNDLEDGTKSMKSNNHLKKSMKSRH--VVMMSLGTGIGTGLLVANAKGLSLAGPGSLV 125
Query: 357 LGYTDVSL----FVSLTSIWGFFGRIISGSVS---ELFIKKAATPRPLWNAASQILMAVG 409
+GY VS V G + G+ + +FI K+ W Q L +
Sbjct: 126 IGYVMVSFVTYFMVQAAGEMGVTYPTLPGNFNAYNSIFISKSFGFATTWLFCIQWLTVLP 185
Query: 410 YILLAMALPGSLYIGSI----VVGICYGVRLAITVPTASELFGLKYYG---LIYNILILN 462
L+ ++ + +I + I Y L I FG+K YG I+N +
Sbjct: 186 LELITSSMTVKYWNDTINADVFIVIFYVFLLFI------HFFGVKAYGETEFIFNSCKIL 239
Query: 463 LPLGSFLFS-----------GLLAGILYDREATATEGGGNTCVGGHCYRLVFIVMAAACI 511
+ G + S G + G + + EG G T G CY LV + I
Sbjct: 240 MVAGFIILSVVINCGGAGVDGYIGGKYWRDPGSFAEGSGATRFKGICYILVSAYFSFGGI 299
Query: 512 VGFFLDI 518
F L I
Sbjct: 300 ELFVLSI 306
>IRKC_MOUSE (P52187) ATP-sensitive inward rectifier potassium
channel 12 (Potassium channel, inwardly rectifying,
subfamily J, member 12) (Inward rectifier K(+) channel
Kir2.2) (IRK2)
Length = 427
Score = 31.6 bits (70), Expect = 5.6
Identities = 23/70 (32%), Positives = 34/70 (47%), Gaps = 4/70 (5%)
Query: 472 GLLAGILYDREATATEGGGNTCVGGHCYRLVFIVMAAACIVGFFLDILLSIRTKNVYNKI 531
G +A L+ E T G G CV C VF+V+A + IVG +D S + K+
Sbjct: 129 GFMAAFLFSIETQTTIGYGLRCVTEECPVAVFMVVAQS-IVGCIID---SFMNGAIMAKM 184
Query: 532 SMSKKSKKSL 541
+ KK ++L
Sbjct: 185 ARPKKRAQTL 194
>CTF5_MOUSE (Q80ZM8) Protein C20orf155 homolog
Length = 303
Score = 31.6 bits (70), Expect = 5.6
Identities = 18/70 (25%), Positives = 35/70 (49%), Gaps = 17/70 (24%)
Query: 212 SYFGVCNAVAVVVAVYLLAYGFVPSPSSL-----------------VSRVFVAVLLVLLA 254
+Y + V ++ AV+ + Y +P+P +L +S+V AV L+L+A
Sbjct: 196 TYMIISRDVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTFISKVNTAVQLILVA 255
Query: 255 SPVGIPVYSY 264
+ + PV++Y
Sbjct: 256 ASLAAPVFNY 265
>CTF5_HUMAN (Q9UJA2) Protein C20orf155 (GCD10 protein homolog)
Length = 301
Score = 31.6 bits (70), Expect = 5.6
Identities = 18/70 (25%), Positives = 35/70 (49%), Gaps = 17/70 (24%)
Query: 212 SYFGVCNAVAVVVAVYLLAYGFVPSPSSL-----------------VSRVFVAVLLVLLA 254
+Y + V ++ AV+ + Y +P+P +L +S+V AV L+L+A
Sbjct: 195 TYMIISRDVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTFISKVNTAVQLILVA 254
Query: 255 SPVGIPVYSY 264
+ + PV++Y
Sbjct: 255 ASLAAPVFNY 264
>IRKC_HUMAN (Q14500) ATP-sensitive inward rectifier potassium
channel 12 (Potassium channel, inwardly rectifying,
subfamily J, member 12) (Inward rectifier K(+) channel
Kir2.2) (IRK2)
Length = 432
Score = 31.2 bits (69), Expect = 7.3
Identities = 23/70 (32%), Positives = 34/70 (47%), Gaps = 4/70 (5%)
Query: 472 GLLAGILYDREATATEGGGNTCVGGHCYRLVFIVMAAACIVGFFLDILLSIRTKNVYNKI 531
G +A L+ E T G G CV C VF+V+A + IVG +D S + K+
Sbjct: 129 GFMAAFLFSIETQTTIGYGLRCVTEECPVAVFMVVAQS-IVGCIID---SFMIGAIMAKM 184
Query: 532 SMSKKSKKSL 541
+ KK ++L
Sbjct: 185 ARPKKRAQTL 194
>HPPA_RHILO (Q983A3) Pyrophosphate-energized proton pump (EC
3.6.1.1) (Pyrophosphate-energized inorganic
pyrophosphatase) (H+-PPase) (Membrane-bound
proton-translocating pyrophosphatase)
Length = 713
Score = 31.2 bits (69), Expect = 7.3
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 52 NNLSVAKDVGKAFGLLAGLSSDFLPTWAILLIGS-VEGLIGYGVQWLVVGQFINPLPYWQ 110
N ++A +VG G AG+++D T+A+ ++ + V G I +G ++ + PL
Sbjct: 209 NPATIADNVGDNVGDCAGMAADLFETYAVTVVATMVLGAIFFGGTAVLGAAMLYPLAICG 268
Query: 111 MCVFLCLGG 119
C+ + G
Sbjct: 269 ACILTSIVG 277
>NU5M_ARATH (P29388) NADH-ubiquinone oxidoreductase chain 5 (EC
1.6.5.3) (NADH dehydrogenase subunit 5)
Length = 669
Score = 30.8 bits (68), Expect = 9.5
Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 29 NNYTFSNY---SHAL-KSLMHLTQLQ-LNNLSVAKDVGKAFGLLAGLSSDFLPTWAILLI 83
+NY+ S + +HA K+L+ L+ ++ +S +D+ K + GL+S F T+A++LI
Sbjct: 329 SNYSVSVFHLMNHAFFKALLFLSAGSVIHAMSDEQDMRK----MGGLASSFPLTYAMMLI 384
Query: 84 GSVEGLIGYGVQWLVVGQFINPLPYWQMCVFLCLGGNSTTWM-NTAVLVTSIRNFR 138
GS+ LIG+ + G + + + GN W+ + +VL TS +FR
Sbjct: 385 GSL-SLIGFP---FLTGFYSKDVILELAYTKYTISGNFAFWLGSVSVLFTSYYSFR 436
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.139 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,727,613
Number of Sequences: 164201
Number of extensions: 2607240
Number of successful extensions: 6398
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 6378
Number of HSP's gapped (non-prelim): 32
length of query: 547
length of database: 59,974,054
effective HSP length: 115
effective length of query: 432
effective length of database: 41,090,939
effective search space: 17751285648
effective search space used: 17751285648
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0112.1