Lotus
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0111b.7
         (402 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran...    92  2e-18
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran...    90  9e-18
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran...    89  2e-17
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran...    86  2e-16
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III     84  6e-16
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran...    72  3e-12
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei...    64  5e-10
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei...    64  5e-10
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei...    64  5e-10
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot...    54  5e-07
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot...    48  5e-05
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro...    45  3e-04
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro...    45  3e-04
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro...    45  4e-04
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro...    44  6e-04
POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23...    33  1.7

>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
           transposon 17.6 [Contains: Protease (EC 3.4.23.-);
           Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1058

 Score = 92.4 bits (228), Expect = 2e-18
 Identities = 51/138 (36%), Positives = 79/138 (56%)

Query: 38  TSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVLMQHREAMAYASSQLKLHERN 97
           ++F+++K  ++  P+L +P   + + +  +AS   LG VL Q    ++Y S  L  HE N
Sbjct: 485 SAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEIN 544

Query: 98  YLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLKYLFD*KDLNMGQRCWMNFIEDYD 157
           Y T + EL  +V+A K +RHYL G  F + S+H+ L +L+  KD N     W   + ++D
Sbjct: 545 YSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFD 604

Query: 158 FTLLYHPGKANVVADALS 175
           F + Y  GK N VADALS
Sbjct: 605 FDIKYIKGKENCVADALS 622


>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
           transposon gypsy [Contains: Reverse transcriptase (EC
           2.7.7.49); Endonuclease]
          Length = 1035

 Score = 90.1 bits (222), Expect = 9e-18
 Identities = 53/164 (32%), Positives = 92/164 (55%), Gaps = 2/164 (1%)

Query: 19  TVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPV-LTLPLEKEPYEVYCNAS*QGLGCVL 77
           +V K  S++     +   R +FQ ++  L +  V L  P  K+P+++  +AS  G+G VL
Sbjct: 451 SVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVL 510

Query: 78  MQHREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGS-TFTVFSNHKGLKYL 136
            Q    +   S  LK  E+NY T++ EL  +V+AL   +++LYGS    +F++H+ L + 
Sbjct: 511 SQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFA 570

Query: 137 FD*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQAIH 180
              ++ N   + W ++I+ ++  + Y PGK N VADALS Q ++
Sbjct: 571 VADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQNLN 614


>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
           transposon opus [Contains: Protease (EC 3.4.23.-);
           Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1003

 Score = 89.4 bits (220), Expect = 2e-17
 Identities = 52/161 (32%), Positives = 87/161 (53%), Gaps = 5/161 (3%)

Query: 20  VDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVLMQ 79
           +  + S +    +D     SF ++K  L ++ +L  P   +P+ +  +AS   +G VL Q
Sbjct: 393 IKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQ 452

Query: 80  HREA----MAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGS-TFTVFSNHKGLK 134
             +     +AY S  L   E NY T + E+  ++++L   R YLYG+ T  V+++H+ L 
Sbjct: 453 DDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLT 512

Query: 135 YLFD*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALS 175
           +    ++ N   + W   IE+Y+  L+Y PGK+NVVADALS
Sbjct: 513 FALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALS 553


>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
           transposon 297 [Contains: Protease (EC 3.4.23.-);
           Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1059

 Score = 85.9 bits (211), Expect = 2e-16
 Identities = 48/137 (35%), Positives = 77/137 (56%)

Query: 39  SFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVLMQHREAMAYASSQLKLHERNY 98
           +F+++K  +   P+L LP  ++ + +  +AS   LG VL Q+   +++ S  L  HE NY
Sbjct: 485 AFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNY 544

Query: 99  LTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLKYLFD*KDLNMGQRCWMNFIEDYDF 158
              + EL  +V+A K +RHYL G  F + S+H+ L++L + K+       W   + +Y F
Sbjct: 545 SAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQF 604

Query: 159 TLLYHPGKANVVADALS 175
            + Y  GK N VADALS
Sbjct: 605 KIDYIKGKENSVADALS 621


>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
          Length = 2186

 Score = 84.0 bits (206), Expect = 6e-16
 Identities = 56/150 (37%), Positives = 82/150 (54%), Gaps = 15/150 (10%)

Query: 39   SFQEMKKRLTAAPVLTLPLEK------EPYEVYCNAS*QGLGCVLMQH-----REAMAYA 87
            +FQE+KK +   PVL  P  +       P+ +Y +AS +G+G VL Q      +  +A+A
Sbjct: 1215 AFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQHPIAFA 1274

Query: 88   SSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLKYLFD*KDLNMGQR 147
            S  L   E  Y   DLE   ++FAL+ ++  +YG+  TVF++HK L  L   K   +  R
Sbjct: 1275 SKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLL--KGSPLADR 1332

Query: 148  CWMNFIE--DYDFTLLYHPGKANVVADALS 175
             W   IE  ++D  ++Y  GKAN VADALS
Sbjct: 1333 LWRWSIEILEFDVKIVYLAGKANAVADALS 1362


>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
           transposon 412 [Contains: Protease (EC 3.4.23.-);
           Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1237

 Score = 72.0 bits (175), Expect = 3e-12
 Identities = 53/166 (31%), Positives = 82/166 (48%), Gaps = 4/166 (2%)

Query: 18  RTVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVL 77
           R + +   +   F      + +F  +K +L    +L  P   + + +  +AS Q  G VL
Sbjct: 572 RHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVL 631

Query: 78  MQ----HREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGL 133
            Q    H+  +AYAS      E N  T + ELA + +A+  +R Y+YG  FTV ++H+ L
Sbjct: 632 TQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPL 691

Query: 134 KYLFD*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQAI 179
            YLF   + +         +E+Y+FT+ Y  GK N VADALS   I
Sbjct: 692 TYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRITI 737


>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
           type 3
          Length = 1333

 Score = 64.3 bits (155), Expect = 5e-10
 Identities = 42/146 (28%), Positives = 75/146 (50%), Gaps = 9/146 (6%)

Query: 39  SFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVLMQHRE-----AMAYASSQLKL 93
           + + +K+ L + PVL      +   +  +AS   +G VL Q  +      + Y S+++  
Sbjct: 685 AIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSK 744

Query: 94  HERNYLTHDLELAVVVFALKIWRHYLYGST--FTVFSNHKGL--KYLFD*KDLNMGQRCW 149
            + NY   D E+  ++ +LK WRHYL  +   F + ++H+ L  +   + +  N     W
Sbjct: 745 AQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARW 804

Query: 150 MNFIEDYDFTLLYHPGKANVVADALS 175
             F++D++F + Y PG AN +ADALS
Sbjct: 805 QLFLQDFNFEINYRPGSANHIADALS 830


>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
           type 2
          Length = 1333

 Score = 64.3 bits (155), Expect = 5e-10
 Identities = 42/146 (28%), Positives = 75/146 (50%), Gaps = 9/146 (6%)

Query: 39  SFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVLMQHRE-----AMAYASSQLKL 93
           + + +K+ L + PVL      +   +  +AS   +G VL Q  +      + Y S+++  
Sbjct: 685 AIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSK 744

Query: 94  HERNYLTHDLELAVVVFALKIWRHYLYGST--FTVFSNHKGL--KYLFD*KDLNMGQRCW 149
            + NY   D E+  ++ +LK WRHYL  +   F + ++H+ L  +   + +  N     W
Sbjct: 745 AQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARW 804

Query: 150 MNFIEDYDFTLLYHPGKANVVADALS 175
             F++D++F + Y PG AN +ADALS
Sbjct: 805 QLFLQDFNFEINYRPGSANHIADALS 830


>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
           type 1
          Length = 1333

 Score = 64.3 bits (155), Expect = 5e-10
 Identities = 42/146 (28%), Positives = 75/146 (50%), Gaps = 9/146 (6%)

Query: 39  SFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVLMQHRE-----AMAYASSQLKL 93
           + + +K+ L + PVL      +   +  +AS   +G VL Q  +      + Y S+++  
Sbjct: 685 AIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSK 744

Query: 94  HERNYLTHDLELAVVVFALKIWRHYLYGST--FTVFSNHKGL--KYLFD*KDLNMGQRCW 149
            + NY   D E+  ++ +LK WRHYL  +   F + ++H+ L  +   + +  N     W
Sbjct: 745 AQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARW 804

Query: 150 MNFIEDYDFTLLYHPGKANVVADALS 175
             F++D++F + Y PG AN +ADALS
Sbjct: 805 QLFLQDFNFEINYRPGSANHIADALS 830


>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic
           protease (EC 3.4.23.-); Endonuclease; Reverse
           transcriptase (EC 2.7.7.49)]
          Length = 659

 Score = 54.3 bits (129), Expect = 5e-07
 Identities = 43/162 (26%), Positives = 72/162 (43%), Gaps = 8/162 (4%)

Query: 26  EESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVLM----QHR 81
           E+ST+  +        ++KK L + P L  P   +   +  +AS +  G +L      H 
Sbjct: 494 EDSTWTWNDTDSQYMAKIKKNLKSFPKLYHPEPNDKLVIETDASEEFWGGILKAIHNSHE 553

Query: 82  EAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLKYLFD*K- 140
               YAS   K  ERNY +++ EL  V+  +K +  YL  S F + +++K   +  +   
Sbjct: 554 YICRYASGSFKAAERNYHSNEKELLAVIRVIKKFSIYLTPSRFLIRTDNKNFTHFVNINL 613

Query: 141 --DLNMGQRC-WMNFIEDYDFTLLYHPGKANVVADALSHQAI 179
             D   G+   W  ++  YDF + +  G  NV AD L    +
Sbjct: 614 KGDRKQGRLVRWQMWLSQYDFDVEHIAGTKNVFADFLQENTL 655


>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic
           protease (EC 3.4.23.-); Endonuclease; Reverse
           transcriptase (EC 2.7.7.49)]
          Length = 666

 Score = 47.8 bits (112), Expect = 5e-05
 Identities = 41/144 (28%), Positives = 64/144 (43%), Gaps = 9/144 (6%)

Query: 41  QEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVLMQH-----REAMAYASSQLKLHE 95
           +++KK L + P L LP  ++   +  +AS    G VL             Y+S   K  E
Sbjct: 518 KKIKKNLGSFPKLYLPKPEDHLIIETDASDSFWGGVLKARALDGVELICRYSSGSFKQAE 577

Query: 96  RNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLKYLFD*K---DLNMGQRC-WMN 151
           +NY ++D EL  V   +  +  YL    FTV +++K   Y        D   G+   W N
Sbjct: 578 KNYHSNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGRLVRWQN 637

Query: 152 FIEDYDFTLLYHPGKANVVADALS 175
           +   Y F + +  G  NV+AD L+
Sbjct: 638 WFSKYQFDVEHLEGVKNVLADCLT 661


>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic
           protease (EC 3.4.23.-); Endonuclease; Reverse
           transcriptase (EC 2.7.7.49)]
          Length = 679

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 18/158 (11%)

Query: 41  QEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVLMQ-------HREAMA-YASSQLK 92
           Q++KK L   P L  PL +E   +  +AS    G +L         + E +  YAS   K
Sbjct: 525 QKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFK 584

Query: 93  LHERNYLTHDLELAVVVFALKIWR------HYLYGSTFTVFSNHKGLKYLFD*KDLNMGQ 146
             ERNY ++D E   V+  +K +       H+L  +  T F +   L Y  D K   +G+
Sbjct: 585 AAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK---LGR 641

Query: 147 RC-WMNFIEDYDFTLLYHPGKANVVADALSHQAIHVSS 183
              W  ++  Y F + +  G  N  AD LS +   V+S
Sbjct: 642 NIRWQAWLSHYSFDVEHIKGTDNHFADFLSREFNKVNS 679


>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic
           protease (EC 3.4.23.-); Endonuclease; Reverse
           transcriptase (EC 2.7.7.49)]
          Length = 679

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 18/158 (11%)

Query: 41  QEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVLMQ-------HREAMA-YASSQLK 92
           Q++KK L   P L  PL +E   +  +AS    G +L         + E +  YAS   K
Sbjct: 525 QKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFK 584

Query: 93  LHERNYLTHDLELAVVVFALKIWR------HYLYGSTFTVFSNHKGLKYLFD*KDLNMGQ 146
             ERNY ++D E   V+  +K +       H+L  +  T F +   L Y  D K   +G+
Sbjct: 585 AAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK---LGR 641

Query: 147 RC-WMNFIEDYDFTLLYHPGKANVVADALSHQAIHVSS 183
              W  ++  Y F + +  G  N  AD LS +   V+S
Sbjct: 642 NIRWQAWLSHYSFDVEHIKGTDNHFADFLSREFNKVNS 679


>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic
           protease (EC 3.4.23.-); Endonuclease; Reverse
           transcriptase (EC 2.7.7.49)]
          Length = 674

 Score = 44.7 bits (104), Expect = 4e-04
 Identities = 45/158 (28%), Positives = 70/158 (43%), Gaps = 18/158 (11%)

Query: 41  QEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVLMQ-------HREAMA-YASSQLK 92
           Q++KK L   P L  PL +E   +  +AS    G +L         + E +  YAS   K
Sbjct: 520 QKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFK 579

Query: 93  LHERNYLTHDLELAVVVFALKIWR------HYLYGSTFTVFSNHKGLKYLFD*KDLNMGQ 146
             E+NY ++D E   V+  +K +       H+L  +  T F +   L Y  D K   +G+
Sbjct: 580 AAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK---LGR 636

Query: 147 RC-WMNFIEDYDFTLLYHPGKANVVADALSHQAIHVSS 183
              W  ++  Y F + +  G  N  AD LS +   V+S
Sbjct: 637 NIRWQAWLSHYSFDVEHIKGTDNHFADFLSREFNRVNS 674


>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic
           protease (EC 3.4.23.-); Endonuclease; Reverse
           transcriptase (EC 2.7.7.49)]
          Length = 679

 Score = 44.3 bits (103), Expect = 6e-04
 Identities = 45/158 (28%), Positives = 70/158 (43%), Gaps = 18/158 (11%)

Query: 41  QEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVLMQ-------HREAMA-YASSQLK 92
           Q++KK L   P L  PL +E   +  +AS    G +L         + E +  YAS   K
Sbjct: 525 QKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFK 584

Query: 93  LHERNYLTHDLELAVVVFALKIWR------HYLYGSTFTVFSNHKGLKYLFD*KDLNMGQ 146
             E+NY ++D E   V+  +K +       H+L  +  T F +   L Y  D K   +G+
Sbjct: 585 AAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK---LGR 641

Query: 147 RC-WMNFIEDYDFTLLYHPGKANVVADALSHQAIHVSS 183
              W  ++  Y F + +  G  N  AD LS +   V+S
Sbjct: 642 NIRWQAWLSHYSFDVEHIKGTDNHFADFLSREFNKVNS 679


>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC
           3.4.23.-); Reverse transcriptase/ribonuclease H (EC
           2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
          Length = 1165

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 39  SFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVLMQ----HREAMAYASSQLKLH 94
           +F  +KK L +AP L LP   +P+ +Y +        VL Q     R  +AY S +L   
Sbjct: 460 AFDHIKKALLSAPALALPDLTKPFTLYIDERAGVARGVLTQTLGPWRRPVAYLSKKLDPV 519

Query: 95  ERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNH 130
              + T    +A V   LK       G   TV ++H
Sbjct: 520 ASGWPTCLKAVAAVALLLKDADKLTLGQNVTVIASH 555


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.353    0.155    0.544 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,050,666
Number of Sequences: 164201
Number of extensions: 1416064
Number of successful extensions: 6305
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6285
Number of HSP's gapped (non-prelim): 16
length of query: 402
length of database: 59,974,054
effective HSP length: 112
effective length of query: 290
effective length of database: 41,583,542
effective search space: 12059227180
effective search space used: 12059227180
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.5 bits)
S2: 67 (30.4 bits)


Lotus: description of TM0111b.7