BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0110a.16
(1427 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 436 e-121
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 227 2e-58
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 135 6e-31
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 115 9e-25
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 103 3e-21
YMU0_YEAST (Q04670) Transposon Ty1 protein B 91 3e-17
YJZ9_YEAST (P47100) Transposon Ty1 protein B 90 5e-17
YMD9_YEAST (Q03434) Transposon Ty1 protein B 88 2e-16
YME4_YEAST (Q04711) Transposon Ty1 protein B 87 2e-16
YMT5_YEAST (Q04214) Transposon Ty1 protein B 86 7e-16
YJZ7_YEAST (P47098) Transposon Ty1 protein B 86 7e-16
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 82 8e-15
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 82 1e-14
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 56 6e-07
M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710... 49 8e-05
YCH5_YEAST (P25601) Transposon Ty5-1 16.0 kDa hypothetical protein 45 0.001
M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300... 45 0.002
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 40 0.060
FA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 pr... 38 0.17
POL_FIVSD (P19028) Pol polyprotein [Contains: Protease (Retropep... 38 0.23
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 436 bits (1122), Expect = e-121
Identities = 345/1273 (27%), Positives = 568/1273 (44%), Gaps = 145/1273 (11%)
Query: 43 NGEN-YNSWNRSMMIALSVKNKLGFINGDFPRPADDDPLLQSWIRNDHVVMSWILNCVSK 101
NG+N +++W R M L + ++ D +P D + W D S I +S
Sbjct: 12 NGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKP--DTMKAEDWADLDERAASAIRLHLSD 69
Query: 102 DIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLKKDLLNLQQESLTVTQFYTKHKAIWD 161
D+V+++I +A+ IW L+ + T LKK L L T + H +++
Sbjct: 70 DVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTN---FLSHLNVFN 126
Query: 162 ELQDYLPQRSCVCGENRVLLDYFQQEQIMHFLMSLSDSYNQIKSHVLLMNPLPPMNRVFS 221
L L E +++ + L SL SY+ + + +L + V S
Sbjct: 127 GLITQLANLGVKIEE---------EDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTS 177
Query: 222 MVLQEEKQREIAARSADL------NSAFAAQATNSGKSGKKDRDRPL-------CSYCGK 268
+L EK R+ ++ + N G+SG + + + C C +
Sbjct: 178 ALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQ 237
Query: 269 LGHSVDRCFKKHGYPPGLNFKNKSSAVHHVDSSEVSGSSVPQDPPITSSQYQQLLSLLTA 328
GH C P K ++S + D+
Sbjct: 238 PGHFKRDC------PNPRKGKGETSGQKNDDN---------------------------- 263
Query: 329 QLATSPMPSSSTSEPLQIPSPTDLKGFVFSASSDFSHKTSVWILDSGASCHVCFHLSSFE 388
T+ M ++ + L I + S S W++D+ AS H F
Sbjct: 264 ---TAAMVQNNDNVVLFINEEEECM--------HLSGPESEWVVDTAASHHATPVRDLFC 312
Query: 389 SYHSVRSHTISLPDNTKARVTHIGTV----KLGNSLILHNVCYVPTFTVNLLSVSALLEN 444
Y + T+ + + + +++ IG + +G +L+L +V +VP +NL+S AL +
Sbjct: 313 RYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIAL-DR 371
Query: 445 PKYSIHFFHKTFVIQENKLKTIGRGDTHNGLYYLHASSNNVFSASTSPLSVLNSLCNQSV 504
Y +F ++ + + + L I +G LY +A +C +
Sbjct: 372 DGYESYFANQKWRLTKGSL-VIAKGVARGTLYRTNAE-----------------ICQGEL 413
Query: 505 FPSHCNKSTCTAALWHARLGHPSYNRLSLLSSTIHCKIPSSINENVCPVCPLAKQKRLPF 564
+ + + LWH R+GH S L +L+ C C KQ R+ F
Sbjct: 414 ---NAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSF 470
Query: 565 VSENHFANHSFDLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWTFLIKHKSEAPLAIM 624
+ + + DL++ DV GP + + G+++F+T +DD SR W +++K K +
Sbjct: 471 QTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQ 530
Query: 625 AFFKMVQTQFGKVIKMVRTDNAKELQLTAFLE---KQGTLHQFSCVERPQQNSVVERRHQ 681
F +V+ + G+ +K +R+DN E F E G H+ + PQ N V ER ++
Sbjct: 531 KFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNR 590
Query: 682 QLLNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLHNKSPSTLLYQQDPSYDHLRV 741
++ RS+L + +P FWGE + TA +LIN P+ L + P + ++ SY HL+V
Sbjct: 591 TIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKV 650
Query: 742 FGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGYKLYNLTTKTFHISRDVVFNESIFP 801
FGC F+ R K +++PC+ +GY GY+L++ K SRDVVF ES
Sbjct: 651 FGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVR 710
Query: 802 FQNTRPYVYSQDPFLVPLP*VGLSVPPYDVPQPESVPVPSADHIPA-----TPLVSEIVA 856
+S + P V +PS + P T VSE
Sbjct: 711 TA------------------ADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGE 752
Query: 857 PSPDAIVPPLAVRRSTRVRHPPGYLADYDCPQQTTPHPLSTYYSYDKLTPSYKVYSVKVA 916
+ I + P + P + + P Y PS + V ++
Sbjct: 753 QPGEVIEQGEQLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRY----PSTEY--VLIS 806
Query: 917 SHYEPTYFHQAIQYPEWQQ---AMRTELAAMEANQTWDVVSLPPGKHEIGSKWVYKLKLH 973
EP + + +PE Q AM+ E+ +++ N T+ +V LP GK + KWV+KLK
Sbjct: 807 DDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKD 866
Query: 974 PDGSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNA 1033
D + R+KARLV KG+ Q+ GID+ + FSPV K+T++R +L+LAA E+ QLD+ A
Sbjct: 867 GDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTA 926
Query: 1034 FLNGDLFEEVYMKIPQGYDVKG-ENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQHS 1092
FL+GDL EE+YM+ P+G++V G +++ C+L KS+YGLKQA RQW+ KF S + + +
Sbjct: 927 FLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKT 986
Query: 1093 YHDYSL-FTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKLKFFLG 1151
Y D + F + S + F++LL+YV+D+++ G + I +K L +F +KDLG + LG
Sbjct: 987 YSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILG 1046
Query: 1152 LEIAYSATG--ISLSQRAYALSLLHDTGFTDCRPTSLPMDPNLKLSSDTGPELADSS--- 1206
++I T + LSQ Y +L + +P S P+ +LKLS P +
Sbjct: 1047 MKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNM 1106
Query: 1207 ---QYRRLIGRLLY-LTISRPDIAFTMNKLSQFLSKPTTTHLDALHHLLRYLKTTPGQGF 1262
Y +G L+Y + +RPDIA + +S+FL P H +A+ +LRYL+ T G
Sbjct: 1107 AKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCL 1166
Query: 1263 FFLGQQPPLSQLT 1275
F G P L T
Sbjct: 1167 CFGGSDPILKGYT 1179
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 227 bits (578), Expect = 2e-58
Identities = 126/340 (37%), Positives = 204/340 (59%), Gaps = 15/340 (4%)
Query: 928 IQYPE----WQQAMRTELAAMEANQTWDVVSLPPGKHEIGSKWVYKLKLHPDGSIDRHKA 983
IQY + W++A+ TEL A + N TW + P K+ + S+WV+ +K + G+ R+KA
Sbjct: 897 IQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKA 956
Query: 984 RLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAFLNGDLFEEV 1043
RLVA+G+TQ+ IDY +TF+PVA+I++ R +L+L Y ++ Q+D+ AFLNG L EE+
Sbjct: 957 RLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEI 1016
Query: 1044 YMKIPQGYDVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQHSYHDYSLF--TK 1101
YM++PQG +N+ C+L K+IYGLKQA+R WF F L + F +S D ++ K
Sbjct: 1017 YMRLPQGISCNSDNV-CKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDK 1075
Query: 1102 GSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKLKFFLGLEIAYSATGI 1161
G+ + + +L+YV+D++++ + T +++ K+ L F++ DL ++K F+G+ I I
Sbjct: 1076 GNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKI 1135
Query: 1162 SLSQRAYALSLLHDTGFTDCRPTSLPMDPNLK---LSSDTGPELADSSQYRRLIGRLLYL 1218
LSQ AY +L +C S P+ + L+SD ++ R LIG L+Y+
Sbjct: 1136 YLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDED----CNTPCRSLIGCLMYI 1191
Query: 1219 TI-SRPDIAFTMNKLSQFLSKPTTTHLDALHHLLRYLKTT 1257
+ +RPD+ +N LS++ SK + L +LRYLK T
Sbjct: 1192 MLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGT 1231
Score = 157 bits (397), Expect = 2e-37
Identities = 192/796 (24%), Positives = 311/796 (38%), Gaps = 135/796 (16%)
Query: 40 QPLNGENYNSWNRSMMIALSVKNKLGFINGDFPRPADDDPLLQSWIRNDHVVMSWILNCV 99
+P +GE Y W + L+ ++ L ++G P DD SW + + S I+ +
Sbjct: 9 KPFDGEKYAIWKFRIRALLAEQDVLKVVDGLMPNEVDD-----SWKKAERCAKSTIIEYL 63
Query: 100 SKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLKKDLLNLQQESLTVTQFYTKHKAI 159
S ++ +A++I ++L + + + L+K LL+L+ L+ H I
Sbjct: 64 SDSFLNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLK---LSSEMSLLSHFHI 120
Query: 160 WDELQDYLPQRSCVCGENRVLLDYFQQEQIMHFLMSLSDSYNQIKSHVLLMNPLPPMNRV 219
+DEL L E ++I H L++L Y+ I + + L N
Sbjct: 121 FDELISELLAAGAKIEE---------MDKISHLLITLPSCYDGI---ITAIETLSEENLT 168
Query: 220 FSMVLQEEKQREIAARSAD-------------------LNSAFAAQATNSGKSGK-KDRD 259
+ V +EI ++ N+ F + T K K +
Sbjct: 169 LAFVKNRLLDQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKY 228
Query: 260 RPLCSYCGKLGHSVDRCFKKHGYPPGLNFKNKSSAVHHVDSSEVSGSSVPQDPPITSSQY 319
+ C +CG+ GH CF Y LN KNK +
Sbjct: 229 KVKCHHCGREGHIKKDCFH---YKRILNNKNKENEKQ----------------------- 262
Query: 320 QQLLSLLTAQLATSPMPSSSTSEPLQIPSPTDLKGFVFSASSDFSHKTSVWILDSGASCH 379
Q ATS + E + S D GFV LDSGAS H
Sbjct: 263 --------VQTATSHGIAFMVKE-VNNTSVMDNCGFV---------------LDSGASDH 298
Query: 380 VCFHLSSF-ESYHSVRSHTISLPDNTK-ARVTHIGTVKLGNS--LILHNVCYVPTFTVNL 435
+ S + +S V I++ + T G V+L N + L +V + NL
Sbjct: 299 LINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLEDVLFCKEAAGNL 358
Query: 436 LSVSALLENPKYSIHFFHKTFVIQENKLKTIGRGDTHNGLYYLHASSNNVFSASTSPLSV 495
+SV L E SI F I +N L + N + ++ +
Sbjct: 359 MSVKRLQE-AGMSIEFDKSGVTISKNGLMVVKNSGMLNNVPVINFQA------------- 404
Query: 496 LNSLCNQSVFPSHCNKSTCTAALWHARLGHPSYNRLSLLSSTIHCKIPSSINE-----NV 550
S+ H N LWH R GH S +L + S +N +
Sbjct: 405 ------YSINAKHKNNFR----LWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEI 454
Query: 551 CPVCPLAKQKRLPFVS---ENHFANHSFDLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRF 607
C C KQ RLPF + H F ++H DV GP T +F+ VD + +
Sbjct: 455 CEPCLNGKQARLPFKQLKDKTHIKRPLF-VVHSDVCGPITPVTLDDKNYFVIFVDQFTHY 513
Query: 608 TWTFLIKHKSEAPLAIMAFFKMVQTQFGKVIKMVRTDNAKEL---QLTAFLEKQGTLHQF 664
T+LIK+KS+ F + F + + DN +E ++ F K+G +
Sbjct: 514 CVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHL 573
Query: 665 SCVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNL--HN 722
+ PQ N V ER + + AR+++ + + FWGE + TAT+LIN IP+ L +
Sbjct: 574 TVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSS 633
Query: 723 KSPSTLLYQQDPSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGYKLYNL 782
K+P + + + P HLRVFG + + + + KF ++ + VGY+ G+KL++
Sbjct: 634 KTPYEMWHNKKPYLKHLRVFGATVYVH-IKNKQGKFDDKSFKSIFVGYEP--NGFKLWDA 690
Query: 783 TTKTFHISRDVVFNES 798
+ F ++RDVV +E+
Sbjct: 691 VNEKFIVARDVVVDET 706
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 135 bits (341), Expect = 6e-31
Identities = 78/233 (33%), Positives = 129/233 (54%), Gaps = 3/233 (1%)
Query: 1028 LDINNAFLNGDLFEEVYMKIPQGY-DVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQ 1086
+D++ AFLN + E +Y+K P G+ + + + L +YGLKQA W ++ L +
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 1087 HGFQHSYHDYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKL 1146
GF ++ L+ + + D + + VYV+D++V+ P+ D VKQ L + +KDLGK+
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 1147 KFFLGLEIAYSATG-ISLSQRAYALSLLHDTGFTDCRPTSLPMDPNLKLSSDTGPELADS 1205
FLGL I S G I+LS + Y ++ + T P+ + L T P L D
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180
Query: 1206 SQYRRLIGRLLY-LTISRPDIAFTMNKLSQFLSKPTTTHLDALHHLLRYLKTT 1257
+ Y+ ++G+LL+ RPDI++ ++ LS+FL +P HL++ +LRYL TT
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTT 233
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 115 bits (288), Expect = 9e-25
Identities = 59/154 (38%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 1110 LLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKLKFFLGLEIAYSATGISLSQRAYA 1169
LL+YV+DI+++G + T ++ + L S F +KDLG + +FLG++I +G+ LSQ YA
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 1170 LSLLHDTGFTDCRPTSLPMDPNLKLSSDTGPELADSSQYRRLIGRLLYLTISRPDIAFTM 1229
+L++ G DC+P S P+ L S T + D S +R ++G L YLT++RPDI++ +
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLNSSVSTA-KYPDPSDFRSIVGALQYLTLTRPDISYAV 121
Query: 1230 NKLSQFLSKPTTTHLDALHHLLRYLKTTPGQGFF 1263
N + Q + +PT D L +LRY+K T G +
Sbjct: 122 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLY 155
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 103 bits (257), Expect = 3e-21
Identities = 51/117 (43%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 902 DKLTPSYKVYSVKVASHYEPTYFHQAIQYPEWQQAMRTELAAMEANQTWDVVSLPPGKHE 961
+KL P Y + ++ EP A++ P W QAM+ EL A+ N+TW +V P ++
Sbjct: 10 NKLNPKYSL-TITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNI 68
Query: 962 IGSKWVYKLKLHPDGSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLALA 1018
+G KWV+K KLH DG++DR KARLVAKG+ Q+ GI +++T+SPV + T+R +L +A
Sbjct: 69 LGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 90.5 bits (223), Expect = 3e-17
Identities = 98/368 (26%), Positives = 167/368 (44%), Gaps = 52/368 (14%)
Query: 922 TYFHQAIQYPEWQQAMRTELAAMEANQTWDV------VSLPPGKHEIGSKWVYKLKLHPD 975
TY + ++ QA E+ + +TWD + P K I S +++ K D
Sbjct: 812 TYNKDIKEKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDP-KRVINSMFIFNRKR--D 868
Query: 976 GSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRML-----LALAAMYKWELFQLDI 1030
G+ HKAR VA+G I + DT+ P + TV L+LA + + QLDI
Sbjct: 869 GT---HKARFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDI 920
Query: 1031 NNAFLNGDLFEEVYMKIPQGYDVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQ 1090
++A+L D+ EE+Y++ P + + + RLKKS+YGLKQ+ W+ S L +
Sbjct: 921 SSAYLYADIKEELYIRPPPHLGMNDKLI--RLKKSLYGLKQSGANWYETIKSYLIKQCGM 978
Query: 1091 HSYHDYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAF--KLKDLGKLKF 1148
+S K S V + ++V+D+I+ + + LK + K+ +LG+
Sbjct: 979 EEVRGWSCVFKNSQ---VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGE--- 1032
Query: 1149 FLGLEIAYSATGISLS-QRAYALSLLHDTGFTDCRP-TSLPMDP-NLKLSSDTGPELADS 1205
EI Y G+ + QR + L + T+ P ++P++P KLS+ P L
Sbjct: 1033 -SDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYID 1091
Query: 1206 SQ---------------YRRLIGRLLYLTIS-RPDIAFTMNKLSQFLSKPTTTHLDALHH 1249
Q ++LIG Y+ R D+ + +N L+Q + P+ LD +
Sbjct: 1092 QQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYE 1151
Query: 1250 LLRYLKTT 1257
L++++ T
Sbjct: 1152 LIQFIWNT 1159
Score = 64.3 bits (155), Expect = 2e-09
Identities = 64/281 (22%), Positives = 111/281 (38%), Gaps = 26/281 (9%)
Query: 520 HARLGHPSYN--RLSLLSSTIHCKIPSSIN-----ENVCPVCPLAKQKRLPFVSENHFAN 572
H L H + R SL ++TI S ++ + CP C + K + + +
Sbjct: 172 HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 231
Query: 573 HS----FDLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWTFLIKHKSEAPL-----AI 623
+ F +H D++GP H +F++ D+ ++F W + + + E + I
Sbjct: 232 QNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTI 291
Query: 624 MAFFKMVQTQFGKVIKMVRTDNAKELQLTAFLEKQGTLHQFSCVERPQQNSVVERRHQQL 683
+AF K VI+M R L FLEK G ++ + + V ER ++ L
Sbjct: 292 LAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTL 351
Query: 684 LNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLHNKSPSTLLYQQDPSYDHLRVFG 743
L+ R+ L S +P W I +T + N + +P + +Q L +
Sbjct: 352 LDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSA------RQHAGLAGLDIST 405
Query: 744 CLCFSSTLPSTRH----KFSPRAVPCVLVGYKQGYKGYKLY 780
L F + H K PR +P + + GY +Y
Sbjct: 406 LLPFGQPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIY 446
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 89.7 bits (221), Expect = 5e-17
Identities = 97/368 (26%), Positives = 167/368 (45%), Gaps = 52/368 (14%)
Query: 922 TYFHQAIQYPEWQQAMRTELAAMEANQTWDV------VSLPPGKHEIGSKWVYKLKLHPD 975
TY + ++ +A E+ + +TWD + P K I S +++ K D
Sbjct: 1239 TYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDP-KRVINSMFIFNKKR--D 1295
Query: 976 GSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRML-----LALAAMYKWELFQLDI 1030
G+ HKAR VA+G I + DT+ + TV L+LA + + QLDI
Sbjct: 1296 GT---HKARFVARG-----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDI 1347
Query: 1031 NNAFLNGDLFEEVYMKIPQGYDVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQ 1090
++A+L D+ EE+Y++ P + + + RLKKS+YGLKQ+ W+ S L Q
Sbjct: 1348 SSAYLYADIKEELYIRPPPHLGMNDKLI--RLKKSLYGLKQSGANWYETIKSYLIQQCGM 1405
Query: 1091 HSYHDYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAF--KLKDLGKLKF 1148
+S K S V + ++V+D+++ N + + LK + K+ +LG+
Sbjct: 1406 EEVRGWSCVFKNSQ---VTICLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGE--- 1459
Query: 1149 FLGLEIAYSATGISLS-QRAYALSLLHDTGFTDCRP-TSLPMDP-NLKLSSDTGPELADS 1205
EI Y G+ + QR + L + T+ P ++P++P KLS+ P L
Sbjct: 1460 -SDEEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYID 1518
Query: 1206 SQ---------------YRRLIGRLLYLTIS-RPDIAFTMNKLSQFLSKPTTTHLDALHH 1249
Q ++LIG Y+ R D+ + +N L+Q + P+ LD +
Sbjct: 1519 QQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYE 1578
Query: 1250 LLRYLKTT 1257
L++++ T
Sbjct: 1579 LIQFIWNT 1586
Score = 66.6 bits (161), Expect = 5e-10
Identities = 105/479 (21%), Positives = 186/479 (37%), Gaps = 58/479 (12%)
Query: 337 SSSTSEPLQIPSPTDL---KGFVFSASSDFSHKTSVW----ILDSGASCHVCFHLSSFES 389
S ST+EP+Q+ + DL + S + +H +LDSGAS + + S
Sbjct: 418 SKSTTEPIQLNNKHDLILGQKLTESTVNHTNHSDDELPGHLLLDSGASRTL---IRSAHH 474
Query: 390 YHSVRSHT-ISLPDNTKARV--THIGTVKL---GNSLILHNVCYVPTFTVNLLSVSALLE 443
HS S+ I++ D K + IG ++ N+ V + P +LLS++ L
Sbjct: 475 IHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHTPNIAYDLLSLNELAA 534
Query: 444 NPKYSIHFFHKTFVIQENKLKTIGRGDTHNGLYYLHASSNNVFSASTSPLSVLNSLCNQS 503
I V++ + + + Y++ S S + +N++
Sbjct: 535 ---VDITACFTKNVLERSDGTVLAPIVKYGDFYWV---SKKYLLPSNISVPTINNV---- 584
Query: 504 VFPSHCNKST--CTAALWHARLGHPSYN--RLSLLSSTIHCKIPSSIN-----ENVCPVC 554
H ++ST H L H + R SL ++TI S ++ + CP C
Sbjct: 585 ----HTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDC 640
Query: 555 PLAKQKRLPFVSENHFANHS----FDLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWT 610
+ K + + + + F +H D++GP H +F++ D+ ++F W
Sbjct: 641 LIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWV 700
Query: 611 FLIKHKSEAPL-----AIMAFFKMVQTQFGKVIKMVRTDNAKELQLTAFLEKQGTLHQFS 665
+ + + E + I+AF K VI+M R L FLEK G ++
Sbjct: 701 YPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYT 760
Query: 666 CVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLHNKSP 725
+ + V ER ++ LL+ R+ L S +P W I +T + N + +P +
Sbjct: 761 TTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSA- 819
Query: 726 STLLYQQDPSYDHLRVFGCLCFSSTLPSTRH----KFSPRAVPCVLVGYKQGYKGYKLY 780
+Q L + L F + H K PR +P + + GY +Y
Sbjct: 820 -----RQHAGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIY 873
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 87.8 bits (216), Expect = 2e-16
Identities = 97/368 (26%), Positives = 168/368 (45%), Gaps = 52/368 (14%)
Query: 922 TYFHQAIQYPEWQQAMRTELAAMEANQTWDV------VSLPPGKHEIGSKWVYKLKLHPD 975
TY + ++ +A E+ + +TWD + P K I S +++ K D
Sbjct: 812 TYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDP-KRVINSMFIFNKKR--D 868
Query: 976 GSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRML-----LALAAMYKWELFQLDI 1030
G+ HKAR VA+G I + DT+ + TV L+LA + + QLDI
Sbjct: 869 GT---HKARFVARG-----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDI 920
Query: 1031 NNAFLNGDLFEEVYMKIPQGYDVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQ 1090
++A+L D+ EE+Y++ P + + + RLKKS+YGLKQ+ W+ S L +
Sbjct: 921 SSAYLYADIKEELYIRPPPHLGMNDKLI--RLKKSLYGLKQSGANWYETIKSYLIKQCGM 978
Query: 1091 HSYHDYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAF--KLKDLGKLKF 1148
+S K S V + ++V+D+I+ + + LK + K+ +LG+
Sbjct: 979 EEVRGWSCVFKNSQ---VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGE--- 1032
Query: 1149 FLGLEIAYSATGISLS-QRAYALSLLHDTGFTDCRP-TSLPMDP-NLKLSSDTGPEL--- 1202
EI Y G+ + QR + L + T+ P ++P++P KLS+ P L
Sbjct: 1033 -SDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYID 1091
Query: 1203 -----ADSSQYR-------RLIGRLLYLTIS-RPDIAFTMNKLSQFLSKPTTTHLDALHH 1249
D +Y+ +LIG Y+ R D+ + +N L+Q + P+ LD +
Sbjct: 1092 QDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYE 1151
Query: 1250 LLRYLKTT 1257
L++++ T
Sbjct: 1152 LIQFMWDT 1159
Score = 64.7 bits (156), Expect = 2e-09
Identities = 64/281 (22%), Positives = 111/281 (38%), Gaps = 26/281 (9%)
Query: 520 HARLGHPSYN--RLSLLSSTIHCKIPSSINENV-----CPVCPLAKQKRLPFVSENHFAN 572
H L H + R SL ++TI S ++ + CP C + K + + +
Sbjct: 172 HRMLAHANAQTIRYSLKNNTITYFNESDVDRSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 231
Query: 573 HS----FDLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWTFLIKHKSEAPL-----AI 623
+ F +H D++GP H +F++ D+ ++F W + + + E + I
Sbjct: 232 QNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTI 291
Query: 624 MAFFKMVQTQFGKVIKMVRTDNAKELQLTAFLEKQGTLHQFSCVERPQQNSVVERRHQQL 683
+AF K VI+M R L FLEK G ++ + + V ER ++ L
Sbjct: 292 LAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTL 351
Query: 684 LNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLHNKSPSTLLYQQDPSYDHLRVFG 743
L+ R+ L S +P W I +T + N + +P + +Q L +
Sbjct: 352 LDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSA------RQHAGLAGLDIST 405
Query: 744 CLCFSSTLPSTRH----KFSPRAVPCVLVGYKQGYKGYKLY 780
L F + H K PR +P + + GY +Y
Sbjct: 406 LLPFGQPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIY 446
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 87.4 bits (215), Expect = 2e-16
Identities = 97/368 (26%), Positives = 167/368 (45%), Gaps = 52/368 (14%)
Query: 922 TYFHQAIQYPEWQQAMRTELAAMEANQTWDV------VSLPPGKHEIGSKWVYKLKLHPD 975
TY + ++ +A E+ + TWD + P K I S +++ K D
Sbjct: 812 TYNKDIKEKEKYIEAYHKEVNQLLKMNTWDTDKYYDRKEIDP-KRVINSMFIFNRKR--D 868
Query: 976 GSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRML-----LALAAMYKWELFQLDI 1030
G+ HKAR VA+G I + DT+ + TV L+LA + + QLDI
Sbjct: 869 GT---HKARFVARG-----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDI 920
Query: 1031 NNAFLNGDLFEEVYMKIPQGYDVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQ 1090
++A+L D+ EE+Y++ P + + + RLKKS+YGLKQ+ W+ S L +
Sbjct: 921 SSAYLYADIKEELYIRPPPHLGMNDKLI--RLKKSLYGLKQSGANWYETIKSYLIKQCGM 978
Query: 1091 HSYHDYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAF--KLKDLGKLKF 1148
+S K S V + ++V+D+I+ + + LK + K+ +LG+
Sbjct: 979 EEVRGWSCVFKNSQ---VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGE--- 1032
Query: 1149 FLGLEIAYSATGISLS-QRAYALSLLHDTGFTDCRP-TSLPMDP-NLKLSSDTGPEL--- 1202
EI Y G+ + QR + L + T+ P ++P++P KLS+ P L
Sbjct: 1033 -SDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYID 1091
Query: 1203 -----ADSSQYR-------RLIGRLLYLTIS-RPDIAFTMNKLSQFLSKPTTTHLDALHH 1249
D +Y+ +LIG Y+ R D+ + +N L+Q + P+ LD +
Sbjct: 1092 QDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYE 1151
Query: 1250 LLRYLKTT 1257
L++++ T
Sbjct: 1152 LIQFMWDT 1159
Score = 64.3 bits (155), Expect = 2e-09
Identities = 64/281 (22%), Positives = 111/281 (38%), Gaps = 26/281 (9%)
Query: 520 HARLGHPSYN--RLSLLSSTIHCKIPSSIN-----ENVCPVCPLAKQKRLPFVSENHFAN 572
H L H + R SL ++TI S ++ + CP C + K + + +
Sbjct: 172 HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 231
Query: 573 HS----FDLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWTFLIKHKSEAPL-----AI 623
+ F +H D++GP H +F++ D+ ++F W + + + E + I
Sbjct: 232 QNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTI 291
Query: 624 MAFFKMVQTQFGKVIKMVRTDNAKELQLTAFLEKQGTLHQFSCVERPQQNSVVERRHQQL 683
+AF K VI+M R L FLEK G ++ + + V ER ++ L
Sbjct: 292 LAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTL 351
Query: 684 LNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLHNKSPSTLLYQQDPSYDHLRVFG 743
L+ R+ L S +P W I +T + N + +P + +Q L +
Sbjct: 352 LDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSA------RQHAGLAGLDIST 405
Query: 744 CLCFSSTLPSTRH----KFSPRAVPCVLVGYKQGYKGYKLY 780
L F + H K PR +P + + GY +Y
Sbjct: 406 LLPFGQPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIY 446
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 85.9 bits (211), Expect = 7e-16
Identities = 95/368 (25%), Positives = 166/368 (44%), Gaps = 52/368 (14%)
Query: 922 TYFHQAIQYPEWQQAMRTELAAMEANQTWDV------VSLPPGKHEIGSKWVYKLKLHPD 975
TY + ++ +A E+ + +TWD + P K I S +++ K D
Sbjct: 812 TYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDKYYDRKEIDP-KRVINSMFIFNRKR--D 868
Query: 976 GSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRML-----LALAAMYKWELFQLDI 1030
G+ HKAR VA+G I + DT+ + TV L+LA + + QLDI
Sbjct: 869 GT---HKARFVARG-----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDI 920
Query: 1031 NNAFLNGDLFEEVYMKIPQGYDVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQ 1090
++A+L D+ EE+Y++ P + + + RLKKS+YGLKQ+ W+ S L +
Sbjct: 921 SSAYLYADIKEELYIRPPPHLGMNDKLI--RLKKSLYGLKQSGANWYETIKSYLIKQCGM 978
Query: 1091 HSYHDYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAF--KLKDLGKLKF 1148
+S + S V + ++V+D+++ N + LK + K+ +LG+
Sbjct: 979 EEVRGWSCVFENSQ---VTICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGE--- 1032
Query: 1149 FLGLEIAYSATGISLS-QRAYALSLLHDTGFTDCRP-TSLPMDP-NLKLSSDTGPELADS 1205
EI Y G+ + QR + L + T+ P ++P++P KLS+ P L
Sbjct: 1033 -SDEEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYID 1091
Query: 1206 SQ---------------YRRLIGRLLYLTIS-RPDIAFTMNKLSQFLSKPTTTHLDALHH 1249
Q ++LIG Y+ R D+ + +N L+Q + P+ LD +
Sbjct: 1092 QQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYE 1151
Query: 1250 LLRYLKTT 1257
L++++ T
Sbjct: 1152 LIQFIWNT 1159
Score = 64.3 bits (155), Expect = 2e-09
Identities = 64/281 (22%), Positives = 111/281 (38%), Gaps = 26/281 (9%)
Query: 520 HARLGHPSYN--RLSLLSSTIHCKIPSSIN-----ENVCPVCPLAKQKRLPFVSENHFAN 572
H L H + R SL ++TI S ++ + CP C + K + + +
Sbjct: 172 HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 231
Query: 573 HS----FDLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWTFLIKHKSEAPL-----AI 623
+ F +H D++GP H +F++ D+ ++F W + + + E + I
Sbjct: 232 QNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTI 291
Query: 624 MAFFKMVQTQFGKVIKMVRTDNAKELQLTAFLEKQGTLHQFSCVERPQQNSVVERRHQQL 683
+AF K VI+M R L FLEK G ++ + + V ER ++ L
Sbjct: 292 LAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTL 351
Query: 684 LNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLHNKSPSTLLYQQDPSYDHLRVFG 743
L+ R+ L S +P W I +T + N + +P + +Q L +
Sbjct: 352 LDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSA------RQHAGLAGLDIST 405
Query: 744 CLCFSSTLPSTRH----KFSPRAVPCVLVGYKQGYKGYKLY 780
L F + H K PR +P + + GY +Y
Sbjct: 406 LLPFGQPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIY 446
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 85.9 bits (211), Expect = 7e-16
Identities = 97/368 (26%), Positives = 167/368 (45%), Gaps = 52/368 (14%)
Query: 922 TYFHQAIQYPEWQQAMRTELAAMEANQTWDV------VSLPPGKHEIGSKWVYKLKLHPD 975
TY + ++ +A E+ + +TWD + P K I S +++ K D
Sbjct: 1239 TYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDP-KRVINSMFIFNKKR--D 1295
Query: 976 GSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRML-----LALAAMYKWELFQLDI 1030
G+ HKAR VA+G I + DT+ + TV L+LA + + QLDI
Sbjct: 1296 GT---HKARFVARG-----DIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDI 1347
Query: 1031 NNAFLNGDLFEEVYMKIPQGYDVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQ 1090
++A+L D+ EE+Y++ P + + + RLKKS YGLKQ+ W+ S L +
Sbjct: 1348 SSAYLYADIKEELYIRPPPHLGMNDKLI--RLKKSHYGLKQSGANWYETIKSYLIKQCGM 1405
Query: 1091 HSYHDYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAF--KLKDLGKLKF 1148
+S K S V + ++V+D+I+ + + LK + K+ +LG+
Sbjct: 1406 EEVRGWSCVFKNSQ---VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGE--- 1459
Query: 1149 FLGLEIAYSATGISLS-QRAYALSLLHDTGFTDCRP-TSLPMDP-NLKLSSDTGPEL--- 1202
EI Y G+ + QR + L + T+ P ++P++P KLS+ P L
Sbjct: 1460 -SDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYID 1518
Query: 1203 -----ADSSQYR-------RLIGRLLYLTIS-RPDIAFTMNKLSQFLSKPTTTHLDALHH 1249
D +Y+ +LIG Y+ R D+ + +N L+Q + P+ LD +
Sbjct: 1519 QDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYE 1578
Query: 1250 LLRYLKTT 1257
L++++ T
Sbjct: 1579 LIQFMWDT 1586
Score = 67.0 bits (162), Expect = 3e-10
Identities = 105/479 (21%), Positives = 184/479 (37%), Gaps = 58/479 (12%)
Query: 337 SSSTSEPLQIPSPTDLKGFVFSASSDFSHKTSV-------WILDSGASCHVCFHLSSFES 389
S ST+EP+Q+ + DL S +H +LDSGAS + + S
Sbjct: 418 SKSTTEPIQLNNKHDLTLGQELTESTVNHTNHSDDELPGHLLLDSGASRTL---IRSAHH 474
Query: 390 YHSVRSHT-ISLPDNTKARV--THIGTVKL---GNSLILHNVCYVPTFTVNLLSVSALLE 443
HS S+ I++ D K + IG ++ N+ V + P +LLS++ L
Sbjct: 475 IHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHTPNIAYDLLSLNELAA 534
Query: 444 NPKYSIHFFHKTFVIQENKLKTIGRGDTHNGLYYLHASSNNVFSASTSPLSVLNSLCNQS 503
I V++ + + + Y++ S S + +N++
Sbjct: 535 ---VDITACFTKNVLERSDGTVLAPIVQYGDFYWV---SKRYLLPSNISVPTINNV---- 584
Query: 504 VFPSHCNKST--CTAALWHARLGHPSYN--RLSLLSSTIHCKIPSSIN-----ENVCPVC 554
H ++ST H L H + R SL ++TI S ++ + CP C
Sbjct: 585 ----HTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDC 640
Query: 555 PLAKQKRLPFVSENHFANHS----FDLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWT 610
+ K + + + + F +H D++GP H +F++ D+ ++F W
Sbjct: 641 LIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWV 700
Query: 611 FLIKHKSEAPL-----AIMAFFKMVQTQFGKVIKMVRTDNAKELQLTAFLEKQGTLHQFS 665
+ + + E + I+AF K VI+M R L FLEK G ++
Sbjct: 701 YPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYT 760
Query: 666 CVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLHNKSP 725
+ + V ER ++ LL+ R+ L S +P W I +T + N + +P +
Sbjct: 761 TTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSA- 819
Query: 726 STLLYQQDPSYDHLRVFGCLCFSSTLPSTRH----KFSPRAVPCVLVGYKQGYKGYKLY 780
+Q L + L F + H K PR +P + + GY +Y
Sbjct: 820 -----RQHAGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIY 873
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 82.4 bits (202), Expect = 8e-15
Identities = 85/362 (23%), Positives = 161/362 (43%), Gaps = 43/362 (11%)
Query: 923 YFHQAI-------QYPEWQQAMRTELAAMEANQTWDVVSLPPGKHEIGSKWVYKLK-LHP 974
Y+++AI + E++QA EL ++ + +DV + + EI + +
Sbjct: 1272 YYNEAISKNPDLKEKHEYKQAYHKELQNLKDMKVFDV-DVKYSRSEIPDNLIVPTNTIFT 1330
Query: 975 DGSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITT----VRMLLALAAMYKWELFQLDI 1030
+KAR+V +G TQ DT+S + + +++ L +A + LDI
Sbjct: 1331 KKRNGIYKARIVCRGDTQSP-----DTYSVITTESLNHNHIKIFLMIANNRNMFMKTLDI 1385
Query: 1031 NNAFLNGDLFEEVYMKIPQGYDVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQ 1090
N+AFL L EE+Y IP +D +L K++YGLKQ+ ++W L G +
Sbjct: 1386 NHAFLYAKLEEEIY--IPHPHD---RRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLK 1440
Query: 1091 HSYHDYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKL---- 1146
+ + L+ + D +++ VYV+D +++ N +D LKS F+LK G L
Sbjct: 1441 DNSYTPGLYQ--TEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDV 1498
Query: 1147 --KFFLGLEIAYS----ATGISLSQRAYALSLLHDTGFTDCRPTSLPMDPNLKLSSDTGP 1200
LG+++ Y+ ++L + ++ R +S+P K+
Sbjct: 1499 LDTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDV 1558
Query: 1201 ELADSSQYR-------RLIGRLLYLTIS-RPDIAFTMNKLSQFLSKPTTTHLDALHHLLR 1252
++R +L+G L Y+ R DI F + K+++ ++ P ++ +++
Sbjct: 1559 LQMSEEEFRQGVLKLQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQ 1618
Query: 1253 YL 1254
YL
Sbjct: 1619 YL 1620
Score = 72.8 bits (177), Expect = 6e-12
Identities = 95/438 (21%), Positives = 176/438 (39%), Gaps = 44/438 (10%)
Query: 371 ILDSGASCHVCFHLSSFESYHSVRSHT--ISLPDNTKARVTHIGTVKLGNSLILHN---- 424
I+D+G+ ++ + +Y T + N+ V G +K+ N HN
Sbjct: 413 IIDTGSGVNITNDKTLLHNYEDSNRSTRFFGIGKNSSVSVKGYGYIKIKNG---HNNTDN 469
Query: 425 ----VCYVPTFTVNLLSVSALLENPKYSIHFFHKTFVIQENKLKTIGRGDTHNGLYYLHA 480
YVP ++S L + K + + + K+KT NG+ +H
Sbjct: 470 KCLLTYYVPEEESTIISCYDLAKKTKMVLSRKYTRLGNKIIKIKT----KIVNGV--IHV 523
Query: 481 SSNNVFSASTSPLSVLNSLCNQSVFPSHCNKSTCTAALWHARLGHPSYNRLSLLSSTIHC 540
N + + S +N++ S NK + T H R+GH ++ +S H
Sbjct: 524 KMNELIERPSDD-SKINAIKPTSSPGFKLNKRSITLEDAHKRMGHTGIQQIE--NSIKHN 580
Query: 541 KIPSSI------NENVCPVCPLAKQ-KRLPFVSE--NHFANHSFDLIHC-DVWGPFHVPT 590
S+ NE C C ++K KR + NH +H C D++GP
Sbjct: 581 HYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTDHEPGSSWCMDIFGPVSSSN 640
Query: 591 HVGHRFFLTIVDDHSRF--TWTFLIKHKSEAPLAIMAFFKMVQTQFGKVIKMVRTDNAKE 648
R+ L +VD+++R+ T T K+ + + V+TQF + ++ + +D E
Sbjct: 641 ADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQYVETQFDRKVREINSDRGTE 700
Query: 649 L---QLTAFLEKQGTLHQFSCVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECI 705
Q+ + +G H + + N ER + ++ A +LL QS++ + FW +
Sbjct: 701 FTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITDATTLLRQSNLRVKFWEYAV 760
Query: 706 STATHLINLIPTPNLHNKSPSTLLYQQDPSYDHLRVFGCLCFSSTLPSTRH---KFSPRA 762
++AT++ N + + K P + +Q + +R+ L F H K P
Sbjct: 761 TSATNIRNYLEHKST-GKLPLKAISRQPVT---VRLMSFLPFGEKGIIWNHNHKKLKPSG 816
Query: 763 VPCVLVGYKQGYKGYKLY 780
+P +++ GYK +
Sbjct: 817 LPSIILCKDPNSYGYKFF 834
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 81.6 bits (200), Expect = 1e-14
Identities = 91/363 (25%), Positives = 161/363 (44%), Gaps = 42/363 (11%)
Query: 922 TYFHQAIQYPEWQQAMRTELAAMEANQTWDVVS------LPPGKHEIGSKWVYKLKLHPD 975
TY + + +A E++ + TWD + P K I S +++ K D
Sbjct: 1254 TYNKDNKEKDRYVEAYHKEISQLLKMNTWDTNKYYDRNDIDP-KKVINSMFIFNKKR--D 1310
Query: 976 GSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAFL 1035
G+ HKAR VA+G Q D S + L++A + + QLDI++A+L
Sbjct: 1311 GT---HKARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYL 1367
Query: 1036 NGDLFEEVYMKIPQGYDVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQHSYHD 1095
D+ EE+Y++ P + + L RL+KS+YGLKQ+ W+ S L
Sbjct: 1368 YADIKEELYIRPPPHLGLNDKLL--RLRKSLYGLKQSGANWYETIKSYLINCCDMQEVRG 1425
Query: 1096 YSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAF--KLKDLGKLKFFLGLE 1153
+S K S V + ++V+D+I+ + + LK + K+ +LG+ E
Sbjct: 1426 WSCVFKNSQ---VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGE----SDNE 1478
Query: 1154 IAYSATGISLS-QRAYALSLLHDTGFTDCRP-TSLPMDP---NLKLSSDTGPEL------ 1202
I Y G+ + QR+ + L + T+ P ++P++P L+ G +
Sbjct: 1479 IQYDILGLEIKYQRSKYMKLGMEKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDELE 1538
Query: 1203 ADSSQYR-------RLIGRLLYLTIS-RPDIAFTMNKLSQFLSKPTTTHLDALHHLLRYL 1254
D +Y+ +LIG Y+ R D+ + +N L+Q + P+ LD + L++++
Sbjct: 1539 IDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFM 1598
Query: 1255 KTT 1257
T
Sbjct: 1599 WDT 1601
Score = 70.5 bits (171), Expect = 3e-11
Identities = 96/438 (21%), Positives = 175/438 (39%), Gaps = 51/438 (11%)
Query: 371 ILDSGASCHVCFHLSSFESYHSVRSHTISLPDNTKARV--THIGTVKLG---NSLILHNV 425
++DSGAS + S+ +H+ + I++ D K + IG + +
Sbjct: 455 LIDSGASQTLV--RSAHYLHHATPNSEINIVDAQKQDIPINAIGNLHFNFQNGTKTSIKA 512
Query: 426 CYVPTFTVNLLSVSALLENPKYSIHFFHKTFVIQENKLKTIGRGDTHNGLYYLHASSNNV 485
+ P +LLS+S L N + F T ++ + + H Y+L S +
Sbjct: 513 LHTPNIAYDLLSLSELA-NQNITACFTRNT--LERSDGTVLAPIVKHGDFYWL--SKKYL 567
Query: 486 FSASTSPLSVLNSLCNQSVFPSHCNKSTCTAALWHARLGHPSYNRL--SLLSSTIHCKIP 543
+ S L++ N ++SV + L H LGH ++ + SL + +
Sbjct: 568 IPSHISKLTINNVNKSKSV-------NKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKE 620
Query: 544 SSINEN-----VCPVCPLAKQKRLPFVSENHF----ANHSFDLIHCDVWGPFHVPTHVGH 594
S I + CP C + K + V + + F +H D++GP H
Sbjct: 621 SDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAP 680
Query: 595 RFFLTIVDDHSRFTWTFLIKHKSEAPL-----AIMAFFKMVQTQFGKVIKMVRTDNAKEL 649
+F++ D+ +RF W + + + E + +I+AF K QF + +++ D E
Sbjct: 681 SYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIK---NQFNARVLVIQMDRGSEY 737
Query: 650 ---QLTAFLEKQGTLHQFSCVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECIS 706
L F +G ++ + + V ER ++ LLN R+LL S +P W +
Sbjct: 738 TNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVE 797
Query: 707 TATHLINLIPTPNLHNKSPSTLLYQQDPSYDHLRVFGCLCFSSTLPSTRH----KFSPRA 762
+T + N + +P ++KS +Q L + L F + H K PR
Sbjct: 798 FSTIIRNSLVSPK-NDKSA-----RQHAGLAGLDITTILPFGQPVIVNNHNPDSKIHPRG 851
Query: 763 VPCVLVGYKQGYKGYKLY 780
+P + + GY +Y
Sbjct: 852 IPGYALHPSRNSYGYIIY 869
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 56.2 bits (134), Expect = 6e-07
Identities = 24/49 (48%), Positives = 35/49 (70%)
Query: 1216 LYLTISRPDIAFTMNKLSQFLSKPTTTHLDALHHLLRYLKTTPGQGFFF 1264
+YLTI+RPD+ F +N+LSQF S T + A++ +L Y+K T GQG F+
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFY 49
>M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710
(ORF120)
Length = 120
Score = 49.3 bits (116), Expect = 8e-05
Identities = 24/83 (28%), Positives = 44/83 (52%), Gaps = 3/83 (3%)
Query: 680 HQQLLNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLHNKSPSTLLYQQDPSYDHL 739
++ ++ RS+L + +P F + +TA H+IN P+ ++ P + +Q P+Y +L
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 740 RVFGCLCFSSTLPSTRHKFSPRA 762
R FGC+ + + K PRA
Sbjct: 62 RRFGCVAY---IHCDEGKLKPRA 81
>YCH5_YEAST (P25601) Transposon Ty5-1 16.0 kDa hypothetical protein
Length = 146
Score = 45.4 bits (106), Expect = 0.001
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 366 KTSVWILDSGASCHVCFHLSSFESYHSVRSHTISLPDNTKARVTHIGTVKLGNSLILHNV 425
K+S WI D+G + H+C S F S+ + GTV +G ++ LH+V
Sbjct: 75 KSSEWIFDTGCTSHMCHDRSIFSSFTRSSRKDFVRGVGGSIPIMGSGTVNIG-TVQLHDV 133
Query: 426 CYVPTFTVNLLSV 438
YVP VNL+SV
Sbjct: 134 SYVPDLPVNLISV 146
>M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300
(ORF145a) (ORF1451)
Length = 145
Score = 44.7 bits (104), Expect = 0.002
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 19/126 (15%)
Query: 464 KTIGRGDTHNGLYYLHASSNNVFSASTSPLSVLNSLCNQSVFPSHCNKSTCTAALWHARL 523
+TI +G+ H+ LY L S T ++ + +++ LWH+RL
Sbjct: 36 RTILKGNRHDSLYILQGS------VETGESNLAETAKDET-------------RLWHSRL 76
Query: 524 GHPSYNRLSLLSSTIHCKIPSSINENVCPVCPLAKQKRLPFVSENHFANHSFDLIHCDVW 583
H S + LL + C C K R+ F + H + D +H D+W
Sbjct: 77 AHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLW 136
Query: 584 GPFHVP 589
G VP
Sbjct: 137 GAPSVP 142
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 39.7 bits (91), Expect = 0.060
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 575 FDLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWTFLIKHKSEAPLAIMAFFKMVQTQF 634
FD D GP +P G+ + L +VD + FTW + K S + A K +
Sbjct: 676 FDKFFIDYIGP--LPPSQGYLYVLVVVDGMTGFTWLYPTKAPSTS-----ATVKSLNVLT 728
Query: 635 GKVI-KMVRTDNAKELQLTAFLE--KQGTLH-QFSCVERPQQNSVVERRHQQLLNVARSL 690
I K++ +D + F E K+ +H +FS PQ S VER++ + + L
Sbjct: 729 SIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKL 788
Query: 691 L 691
L
Sbjct: 789 L 789
>FA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10
precursor
Length = 422
Score = 38.1 bits (87), Expect = 0.17
Identities = 28/93 (30%), Positives = 41/93 (43%), Gaps = 14/93 (15%)
Query: 780 YNLTTKTFHISRDVVFNESIFPFQ-------NTRPYVYSQDPFLVPLP*VGLSVPPYDVP 832
Y+LTT T +V+ + + P + T +++ D L+P G S P P
Sbjct: 286 YDLTTSTS--GDEVILHTGVGPSRLADTVVDETPVVIFTVDNVLLPAELFGKSSSPAPAP 343
Query: 833 QPESVPVPSADHIPATPLVSEIVAPSPDAIVPP 865
+P S P P+ P S + APSP A PP
Sbjct: 344 EPVSAPTPTPAKSP-----SPVEAPSPTAASPP 371
>POL_FIVSD (P19028) Pol polyprotein [Contains: Protease (Retropepsin)
(EC 3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Deoxyuridine
5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)
(dUTPase); Integrase (IN)]
Length = 1124
Score = 37.7 bits (86), Expect = 0.23
Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 5/144 (3%)
Query: 590 THVGHRFFLTIVDDHSRFTWTFLIKHKSEAPLAIMAFFKMVQTQFGKVIKMVRTDNAKEL 649
TH + L + S + W +I ++ A + A +++ ++ N K
Sbjct: 911 THFDGKIILVAIHVESGYIWAQIISQET-ADCTVKAVLQLLSAHIVTELQTDNGPNFKNQ 969
Query: 650 QLTAFLEKQGTLHQFSCVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTAT 709
++ L G H+F PQ ++VE +Q L L ++ ++ A
Sbjct: 970 KMEGVLNYMGVKHKFGIPGNPQSQALVENVNQTLKVWVHKFLPET----TSLDNALALAV 1025
Query: 710 HLINLIPTPNLHNKSPSTLLYQQD 733
H +N + +P LL QQ+
Sbjct: 1026 HCLNFKQRGRIGGMAPYELLAQQE 1049
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171,011,015
Number of Sequences: 164201
Number of extensions: 7423477
Number of successful extensions: 18562
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 18349
Number of HSP's gapped (non-prelim): 174
length of query: 1427
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1304
effective length of database: 39,777,331
effective search space: 51869639624
effective search space used: 51869639624
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0110a.16