BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0109.3
(297 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
OTCC_MYCPN (P75473) Ornithine carbamoyltransferase, catabolic (E... 31 4.2
SCOB_EMENI (Q00659) Sulfur metabolite repression control protein 30 5.5
YL62_BRUSU (P67213) Hypothetical UPF0090 protein BR2162 30 7.2
YJ68_BRUME (P67212) Hypothetical UPF0090 protein BMEI1968 30 7.2
MURF_MYCTU (O06220) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-... 30 7.2
FXL5_MOUSE (Q8C2S5) F-box/LRR-repeat protein 5 (F-box and leucin... 30 7.2
ENO2_PSESM (Q87WD5) Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate ... 30 7.2
DNAK_DEIPR (P94695) Chaperone protein dnaK (Heat shock protein 7... 30 7.2
TIG_RHOBA (Q7URG5) Trigger factor (TF) 30 9.4
>OTCC_MYCPN (P75473) Ornithine carbamoyltransferase, catabolic (EC
2.1.3.3) (OTCase)
Length = 346
Score = 30.8 bits (68), Expect = 4.2
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 33 SAADSDMVWRSFLPSDYEDIVSRAVNPSALQFSSYKQLFHALCSPLLLDGGNKSFKLDKL 92
+ A S M+ +F+ D + +A + + YK++F + L+GG+ SF DKL
Sbjct: 168 NVARSLMIGAAFVGMDIVLVGPKAQHELVQNGAGYKEVFEQCQALFQLNGGSVSFSTDKL 227
Query: 93 SGKKSYILSARDLSITWSSD 112
K+ + D+ ++ D
Sbjct: 228 QAAKNADVIYTDVWLSLGED 247
>SCOB_EMENI (Q00659) Sulfur metabolite repression control protein
Length = 678
Score = 30.4 bits (67), Expect = 5.5
Identities = 14/39 (35%), Positives = 21/39 (52%)
Query: 3 SLPEDCVSEILSHTSPPDACRFSLVSSTLRSAADSDMVW 41
+LP + +IL + C+ S VS R+ AD D+VW
Sbjct: 183 ALPPEIAFKILCYLDTTSLCKASQVSRGWRALADDDVVW 221
>YL62_BRUSU (P67213) Hypothetical UPF0090 protein BR2162
Length = 219
Score = 30.0 bits (66), Expect = 7.2
Identities = 19/71 (26%), Positives = 30/71 (41%), Gaps = 2/71 (2%)
Query: 140 IEGKIRTGVLTPNTSYGAYLIMKVSHRGYGLDSAPAEVSVAVGGRVLRRGKAYLGQKDEK 199
I GK + +P L+ K + A E S+ GR RG+ +G+ D
Sbjct: 92 ISGKYHLEISSPGIDRP--LVRKSDFSDWAGHIAKVETSIVHEGRKKFRGRIVVGEADSV 149
Query: 200 KVEMETLFYGN 210
+E + + YGN
Sbjct: 150 TIESDQISYGN 160
>YJ68_BRUME (P67212) Hypothetical UPF0090 protein BMEI1968
Length = 219
Score = 30.0 bits (66), Expect = 7.2
Identities = 19/71 (26%), Positives = 30/71 (41%), Gaps = 2/71 (2%)
Query: 140 IEGKIRTGVLTPNTSYGAYLIMKVSHRGYGLDSAPAEVSVAVGGRVLRRGKAYLGQKDEK 199
I GK + +P L+ K + A E S+ GR RG+ +G+ D
Sbjct: 92 ISGKYHLEISSPGIDRP--LVRKSDFSDWAGHIAKVETSIVHEGRKKFRGRIVVGEADSV 149
Query: 200 KVEMETLFYGN 210
+E + + YGN
Sbjct: 150 TIESDQISYGN 160
>MURF_MYCTU (O06220)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase (EC 6.3.2.10) (UDP-MurNAc-pentapeptide
synthetase) (D-alanyl-D-alanine-adding enzyme)
Length = 510
Score = 30.0 bits (66), Expect = 7.2
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 158 YLIMKVSHRGYGLDSAPAEVSVAVGGRVLRRGKAYLGQKDEKKVEMET 205
YLI++++ R +G +A AE++ G VL G A+LG+ ++V +T
Sbjct: 183 YLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQT 230
>FXL5_MOUSE (Q8C2S5) F-box/LRR-repeat protein 5 (F-box and
leucine-rich repeat protein 5)
Length = 690
Score = 30.0 bits (66), Expect = 7.2
Identities = 13/43 (30%), Positives = 22/43 (50%)
Query: 4 LPEDCVSEILSHTSPPDACRFSLVSSTLRSAADSDMVWRSFLP 46
LP + + I S+ +P + CR S VS+ A + +W+ P
Sbjct: 208 LPPEVMLSIFSYLNPQELCRCSQVSTKWSQLAKTGSLWKHLYP 250
>ENO2_PSESM (Q87WD5) Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate
dehydratase 2) (2-phospho-D-glycerate hydro-lyase 2)
Length = 427
Score = 30.0 bits (66), Expect = 7.2
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 154 SYGAYLIMKVSHR-GYGLDSAPAEVSVAVGGRVLRRGKAYLGQKDEK 199
+YGA VSHR G +DS+ A+++VA+G L+ G G++ EK
Sbjct: 356 AYGANWGAMVSHRSGETVDSSIADLTVAMGTGHLKTGAPCRGERVEK 402
>DNAK_DEIPR (P94695) Chaperone protein dnaK (Heat shock protein 70)
(Heat shock 70 kDa protein) (HSP70) (Fragment)
Length = 618
Score = 30.0 bits (66), Expect = 7.2
Identities = 23/90 (25%), Positives = 37/90 (40%), Gaps = 4/90 (4%)
Query: 121 NPESRFREVAELRTVNWLEIEGKIRTGVLTPNTSYGAYLIMKVSHRGYGLDSAPAEVSVA 180
NP++ EV W E++ + T G + ++V G D AP +VS
Sbjct: 49 NPQATLFEVKRFIGRRWDEVKDEAARSPFTVKEGPGGSVRIEVD----GKDYAPEQVSAE 104
Query: 181 VGGRVLRRGKAYLGQKDEKKVEMETLFYGN 210
V +++ A LGQK V ++ N
Sbjct: 105 VLRKLVANASAKLGQKITDAVITVPAYFDN 134
>TIG_RHOBA (Q7URG5) Trigger factor (TF)
Length = 480
Score = 29.6 bits (65), Expect = 9.4
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Query: 131 ELRTVNWLEIEGKIRTGVLTPNTSYGAYLIMKVSHRGYGLDSAPAEVSVAVGGRVLRRGK 190
E T +W ++E K ++ A + + APAE+ G R+L GK
Sbjct: 114 EFETPDWKKLELKKPVETISEEDVDAALQRVLSRYASLEASDAPAEI----GDRLLITGK 169
Query: 191 AYLGQKDEKKVEMETLFYGNRRDIFRNRVIQLEQLEEEGKDGGVIPVPGKRDDGWMEIEL 250
G+K +++ E + NR + +L ++ K+G V+ K +G E+
Sbjct: 170 FVDGEKTISEMDEERVTLANRLSLSDAVCENFGELMKDCKEGDVVTGKVKLGEGHANEEM 229
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,048,836
Number of Sequences: 164201
Number of extensions: 1634398
Number of successful extensions: 3735
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3731
Number of HSP's gapped (non-prelim): 9
length of query: 297
length of database: 59,974,054
effective HSP length: 109
effective length of query: 188
effective length of database: 42,076,145
effective search space: 7910315260
effective search space used: 7910315260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0109.3