BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0109.15
(312 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
HYES_RAT (P80299) Soluble epoxide hydrolase (SEH) (EC 3.3.2.3) (... 112 1e-24
HYES_MOUSE (P34914) Soluble epoxide hydrolase (SEH) (EC 3.3.2.3)... 112 1e-24
HYES_HUMAN (P34913) Soluble epoxide hydrolase (SEH) (EC 3.3.2.3)... 108 2e-23
HYES_CORS2 (O52866) Soluble epoxide hydrolase (EC 3.3.2.3) (SEH)... 86 1e-16
DHAA_RHOSD (P59336) Haloalkane dehalogenase (EC 3.8.1.5) 76 1e-13
DHAA_RHORH (Q53042) Haloalkane dehalogenase (EC 3.8.1.5) 76 1e-13
DHAA_MYCSX (Q9ZER0) Haloalkane dehalogenase (EC 3.8.1.5) 76 1e-13
DHMA_MYCAV (Q93K00) Haloalkane dehalogenase (EC 3.8.1.5) 75 3e-13
DHAA_BRAJA (P59337) Haloalkane dehalogenase (EC 3.8.1.5) 74 6e-13
DHA1_MYCTU (P64301) Haloalkane dehalogenase 1 (EC 3.8.1.5) 71 4e-12
DHA1_MYCBO (P64302) Haloalkane dehalogenase 1 (EC 3.8.1.5) 71 4e-12
DEH1_MORSB (Q01398) Haloacetate dehalogenase H-1 (EC 3.8.1.3) 70 5e-12
DHMA_CAUCR (Q9A919) Haloalkane dehalogenase (EC 3.8.1.5) 68 3e-11
DHAA_RHILO (Q98C03) Haloalkane dehalogenase (EC 3.8.1.5) 68 3e-11
DHLA_XANAU (P22643) Haloalkane dehalogenase (EC 3.8.1.5) 67 7e-11
DHAA_AGRT5 (Q8U671) Haloalkane dehalogenase (EC 3.8.1.5) 63 8e-10
ESTE_PSEFL (P22862) Arylesterase (EC 3.1.1.2) (Aryl-ester hydrol... 63 1e-09
EPHD_MYCTU (P66777) Probable oxidoreductase ephD (EC 1.-.-.-) 60 5e-09
EPHD_MYCBO (P66778) Probable oxidoreductase ephD (EC 1.-.-.-) 60 5e-09
DHA2_MYCTU (P64303) Haloalkane dehalogenase 2 (EC 3.8.1.5) 57 5e-08
>HYES_RAT (P80299) Soluble epoxide hydrolase (SEH) (EC 3.3.2.3)
(Epoxide hydratase) (Cytosolic epoxide hydrolase) (CEH)
Length = 554
Score = 112 bits (280), Expect = 1e-24
Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 4 IEHRTVEVN-GIKMHIAEKGQGPVVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRGY 62
+ H V V GI++H E G GP + HGFPE W+SWR+QI L+ G+ +A D++GY
Sbjct: 235 VSHGYVTVKPGIRLHFVEMGSGPAICLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGY 294
Query: 63 GDTDSPISITTYTCFHIVGDIVALIDHLGAKQVFLVAHDWGSIIGWYLCMFRPERVKAYA 122
GD+ SP I Y + ++V ++ LG Q + HDW ++ W + +F PERV+A A
Sbjct: 295 GDSSSPPEIEEYAMELLCEEMVTFLNKLGIPQAVFIGHDWAGVLVWNMALFHPERVRAVA 354
>HYES_MOUSE (P34914) Soluble epoxide hydrolase (SEH) (EC 3.3.2.3)
(Epoxide hydratase) (Cytosolic epoxide hydrolase) (CEH)
Length = 554
Score = 112 bits (280), Expect = 1e-24
Identities = 49/120 (40%), Positives = 71/120 (58%), Gaps = 1/120 (0%)
Query: 4 IEHRTVEVN-GIKMHIAEKGQGPVVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRGY 62
+ H V V GI++H E G GP + HGFPE W+SWR+QI L+ G+ +A D++GY
Sbjct: 235 VSHGYVTVKPGIRLHFVEMGSGPALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGY 294
Query: 63 GDTDSPISITTYTCFHIVGDIVALIDHLGAKQVFLVAHDWGSIIGWYLCMFRPERVKAYA 122
GD+ SP I Y + ++V +D LG Q + HDW ++ W + +F PERV+A A
Sbjct: 295 GDSSSPPEIEEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVA 354
>HYES_HUMAN (P34913) Soluble epoxide hydrolase (SEH) (EC 3.3.2.3)
(Epoxide hydratase) (Cytosolic epoxide hydrolase) (CEH)
Length = 554
Score = 108 bits (269), Expect = 2e-23
Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Query: 14 IKMHIAEKGQGPVVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRGYGDTDSPISITT 73
+++H E G P V HGFPE WYSWR+QI L+ GY +A D++GYG++ +P I
Sbjct: 248 VRLHFVELGW-PAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEE 306
Query: 74 YTCFHIVGDIVALIDHLGAKQVFLVAHDWGSIIGWYLCMFRPERVKAYA 122
Y + ++V +D LG Q + HDWG ++ WY+ +F PERV+A A
Sbjct: 307 YCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVA 355
>HYES_CORS2 (O52866) Soluble epoxide hydrolase (EC 3.3.2.3) (SEH)
(Epoxide hydratase) (Cytosolic epoxide hydrolase) (cEH)
Length = 285
Score = 85.9 bits (211), Expect = 1e-16
Identities = 39/106 (36%), Positives = 62/106 (57%), Gaps = 3/106 (2%)
Query: 4 IEHRTVEVNGIKMHIAEKGQGPVVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRGYG 63
I H +NG +MH G G ++ LHG+P+ WY WR+ I L+ + + +APDLRG G
Sbjct: 4 ITHHQAMINGYRMHYVTAGSGYPLVLLHGWPQSWYEWRNVIPALAEQ-FTVIAPDLRGLG 62
Query: 64 DTDSPISITTYTCFHIVGDIVALIDHLGAKQVFLVAHDWGSIIGWY 109
D++ P +T + + D+ L+ HLG +V ++ HDWG + +Y
Sbjct: 63 DSEKP--MTGFDKRTMATDVRELVSHLGYDKVGVIGHDWGGSVAFY 106
>DHAA_RHOSD (P59336) Haloalkane dehalogenase (EC 3.8.1.5)
Length = 294
Score = 75.9 bits (185), Expect = 1e-13
Identities = 50/125 (40%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 9 VEVNGIKMHIAEKG--QGPVVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRGYGDTD 66
VEV G +MH + G G VLFLHG P Y WR+ I+ + + +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRN-IIPHVAPSHRCIAPDLIGMGKSD 73
Query: 67 SPISITTYTCFHIVGDIVALIDHLGAKQVFLVAHDWGSIIGWYLCMFRPERVKAYAPSSE 126
P Y V + A I+ LG ++V LV HDWGS +G++ PERVK A
Sbjct: 74 KPD--LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEF 131
Query: 127 *NPTP 131
P P
Sbjct: 132 IRPIP 136
>DHAA_RHORH (Q53042) Haloalkane dehalogenase (EC 3.8.1.5)
Length = 293
Score = 75.9 bits (185), Expect = 1e-13
Identities = 50/125 (40%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 9 VEVNGIKMHIAEKG--QGPVVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRGYGDTD 66
VEV G +MH + G G VLFLHG P Y WR+ I+ + + +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRN-IIPHVAPSHRCIAPDLIGMGKSD 73
Query: 67 SPISITTYTCFHIVGDIVALIDHLGAKQVFLVAHDWGSIIGWYLCMFRPERVKAYAPSSE 126
P Y V + A I+ LG ++V LV HDWGS +G++ PERVK A
Sbjct: 74 KPD--LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEF 131
Query: 127 *NPTP 131
P P
Sbjct: 132 IRPIP 136
>DHAA_MYCSX (Q9ZER0) Haloalkane dehalogenase (EC 3.8.1.5)
Length = 307
Score = 75.9 bits (185), Expect = 1e-13
Identities = 50/125 (40%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 9 VEVNGIKMHIAEKG--QGPVVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRGYGDTD 66
VEV G +MH + G G VLFLHG P Y WR+ I+ + + +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRN-IIPHVAPSHRCIAPDLIGMGKSD 73
Query: 67 SPISITTYTCFHIVGDIVALIDHLGAKQVFLVAHDWGSIIGWYLCMFRPERVKAYAPSSE 126
P Y V + A I+ LG ++V LV HDWGS +G++ PERVK A
Sbjct: 74 KPD--LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEF 131
Query: 127 *NPTP 131
P P
Sbjct: 132 IRPIP 136
>DHMA_MYCAV (Q93K00) Haloalkane dehalogenase (EC 3.8.1.5)
Length = 301
Score = 74.7 bits (182), Expect = 3e-13
Identities = 39/107 (36%), Positives = 58/107 (53%), Gaps = 2/107 (1%)
Query: 14 IKMHIAEKG--QGPVVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRGYGDTDSPISI 71
++MH ++G GP ++ LHG P Y +R I L+ G +APDL G+G +D P I
Sbjct: 34 LRMHYLDEGPIDGPPIVLLHGEPTWSYLYRTMITPLTDAGNRVLAPDLIGFGRSDKPSRI 93
Query: 72 TTYTCFHIVGDIVALIDHLGAKQVFLVAHDWGSIIGWYLCMFRPERV 118
Y+ V +V+ +HL V L DWGS+IG + +P+RV
Sbjct: 94 EDYSYQRHVDWVVSWFEHLNLSDVTLFVQDWGSLIGLRIAAEQPDRV 140
>DHAA_BRAJA (P59337) Haloalkane dehalogenase (EC 3.8.1.5)
Length = 310
Score = 73.6 bits (179), Expect = 6e-13
Identities = 50/130 (38%), Positives = 64/130 (48%), Gaps = 5/130 (3%)
Query: 4 IEHRTVEVNGIKMHIAEKG--QGPVVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRG 61
IE R V G M E G PVVLFLHG P + WR+ IL L S H +APDL G
Sbjct: 7 IEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLIG 65
Query: 62 YGDTDSPISITTYTCFHIVGDIVALIDHLGAKQVFLVAHDWGSIIGWYLCMFRPERVKAY 121
+G + P Y F V + A I+ G +LVA DWG+ + ++L RP+ V+
Sbjct: 66 FGQSGKPD--IAYRFFDHVRYLDAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRGL 123
Query: 122 APSSE*NPTP 131
A P P
Sbjct: 124 AFMEFIRPMP 133
>DHA1_MYCTU (P64301) Haloalkane dehalogenase 1 (EC 3.8.1.5)
Length = 300
Score = 70.9 bits (172), Expect = 4e-12
Identities = 37/107 (34%), Positives = 57/107 (52%), Gaps = 2/107 (1%)
Query: 14 IKMHIAEKG--QGPVVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRGYGDTDSPISI 71
++MH ++G GP ++ LHG P Y +R I LS+ G+ +APDL G+G +D P I
Sbjct: 34 LRMHYVDEGPGDGPPIVLLHGEPTWSYLYRTMIPPLSAAGHRVLAPDLIGFGRSDKPTRI 93
Query: 72 TTYTCFHIVGDIVALIDHLGAKQVFLVAHDWGSIIGWYLCMFRPERV 118
YT V + + ++L V L DWGS+IG + +R+
Sbjct: 94 EDYTYLRHVEWVTSWFENLDLHDVTLFVQDWGSLIGLRIAAEHGDRI 140
>DHA1_MYCBO (P64302) Haloalkane dehalogenase 1 (EC 3.8.1.5)
Length = 300
Score = 70.9 bits (172), Expect = 4e-12
Identities = 37/107 (34%), Positives = 57/107 (52%), Gaps = 2/107 (1%)
Query: 14 IKMHIAEKG--QGPVVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRGYGDTDSPISI 71
++MH ++G GP ++ LHG P Y +R I LS+ G+ +APDL G+G +D P I
Sbjct: 34 LRMHYVDEGPGDGPPIVLLHGEPTWSYLYRTMIPPLSAAGHRVLAPDLIGFGRSDKPTRI 93
Query: 72 TTYTCFHIVGDIVALIDHLGAKQVFLVAHDWGSIIGWYLCMFRPERV 118
YT V + + ++L V L DWGS+IG + +R+
Sbjct: 94 EDYTYLRHVEWVTSWFENLDLHDVTLFVQDWGSLIGLRIAAEHGDRI 140
>DEH1_MORSB (Q01398) Haloacetate dehalogenase H-1 (EC 3.8.1.3)
Length = 294
Score = 70.5 bits (171), Expect = 5e-12
Identities = 41/119 (34%), Positives = 61/119 (50%), Gaps = 4/119 (3%)
Query: 3 GIEHRTVEVNGIKMHIAEKGQGPVVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRGY 62
G ++ TV V+G+ + G+GP VL LHGFP+ W L+ + V DLRGY
Sbjct: 5 GFKNSTVTVDGVDIAYTVSGEGPPVLMLHGFPQNRAMWARVAPQLAEH-HTVVCADLRGY 63
Query: 63 GDTDSPISI---TTYTCFHIVGDIVALIDHLGAKQVFLVAHDWGSIIGWYLCMFRPERV 118
GD+D P + + Y+ D + ++ HLG ++ LV HD G G + + PE V
Sbjct: 64 GDSDKPKCLPDRSNYSFRTFAHDQLCVMRHLGFERFHLVGHDRGGRTGHRMALDHPEAV 122
>DHMA_CAUCR (Q9A919) Haloalkane dehalogenase (EC 3.8.1.5)
Length = 302
Score = 68.2 bits (165), Expect = 3e-11
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 10 EVNGIKMHIAEKGQGPV----VLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRGYGDT 65
+ +G + I +GP +L +HG P Y +R I L ++G+ VAPDL G+G +
Sbjct: 28 DADGTALRIHHVDEGPKDQRPILLMHGEPSWAYLYRKVIAELVAKGHRVVAPDLVGFGRS 87
Query: 66 DSPISITTYTCFHIVGDIVALIDHLGAKQVFLVAHDWGSIIGWYLCMFRPERVKAYAPSS 125
D P T YT V + A ++ K + L DWG +IG L PER A S+
Sbjct: 88 DKPAKRTDYTYERHVAWMSAWLEQNDLKDIVLFCQDWGGLIGLRLVAAFPERFSAVVVSN 147
>DHAA_RHILO (Q98C03) Haloalkane dehalogenase (EC 3.8.1.5)
Length = 309
Score = 67.8 bits (164), Expect = 3e-11
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 17 HIAEKGQGPVVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRGYGDTDSPISITTYTC 76
++ GP VLFLHG P + WR+ I ++ G +APDL GYG + P Y
Sbjct: 29 YVEAGASGPTVLFLHGNPTSSHIWRNIIPHVAPFG-RCIAPDLIGYGQSGKPD--IDYRF 85
Query: 77 FHIVGDIVALIDHLGAKQVFLVAHDWGSIIGWYLCMFRPERVKAYA 122
F V + A +D L + V LVA DWG+ + ++L RP+RV A
Sbjct: 86 FDHVRYLDAFLDALDIRDVLLVAQDWGTALAFHLAARRPQRVLGLA 131
>DHLA_XANAU (P22643) Haloalkane dehalogenase (EC 3.8.1.5)
Length = 310
Score = 66.6 bits (161), Expect = 7e-11
Identities = 37/110 (33%), Positives = 53/110 (47%), Gaps = 3/110 (2%)
Query: 13 GIKMHIAEKGQGP---VVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRGYGDTDSPI 69
G++ H ++G V L LHG P Y +R I + G +APD G+G +D P+
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 SITTYTCFHIVGDIVALIDHLGAKQVFLVAHDWGSIIGWYLCMFRPERVK 119
YT ++ALI+ L + + LV DWG +G L M P R K
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFK 142
>DHAA_AGRT5 (Q8U671) Haloalkane dehalogenase (EC 3.8.1.5)
Length = 304
Score = 63.2 bits (152), Expect = 8e-10
Identities = 41/121 (33%), Positives = 57/121 (46%), Gaps = 3/121 (2%)
Query: 2 EGIEHRTVEVNGIKMHIAEKGQGPVVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRG 61
+G + V G+++H E G G ++FLHG P Y WRH L G +A DL G
Sbjct: 18 DGAKAYDVPAFGLQIHTVEHGSGAPIVFLHGNPTSSYLWRHIFRRLHGHG-RLLAVDLIG 76
Query: 62 YGDTDSPISITTYTCFHIVGDIVALIDHLGAKQVFLVAHDWGSIIGWYLCMFRPERVKAY 121
YG + P YT + + A D L + V LV D+G+ G P+RV+A
Sbjct: 77 YGQSSKP--DIEYTLENQQRYVDAWFDALDLRNVTLVLQDYGAAFGLNWASRNPDRVRAV 134
Query: 122 A 122
A
Sbjct: 135 A 135
>ESTE_PSEFL (P22862) Arylesterase (EC 3.1.1.2) (Aryl-ester
hydrolase)
Length = 271
Score = 62.8 bits (151), Expect = 1e-09
Identities = 37/95 (38%), Positives = 51/95 (52%), Gaps = 2/95 (2%)
Query: 9 VEVNGIKMHIAEKGQGPVVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRGYGDTDSP 68
V +G +++ + G G VLF HG+ W +Q+ LSSRGY +A D RG+G +D P
Sbjct: 4 VAKDGTQIYFKDWGSGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
Query: 69 ISITTYTCFHIVGDIVALIDHLGAKQVFLVAHDWG 103
+ Y F DI LI+HL K+V LV G
Sbjct: 64 WTGNDYDTF--ADDIAQLIEHLDLKEVTLVGFSMG 96
>EPHD_MYCTU (P66777) Probable oxidoreductase ephD (EC 1.-.-.-)
Length = 592
Score = 60.5 bits (145), Expect = 5e-09
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 12 NGIKMHIAEKGQ--GPVVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRGYGDTDSPI 69
+G+++ + +G GP V+ +HGFP+ W + L+ R + V D RG G + P
Sbjct: 15 DGVRIAVYHEGNPDGPTVVLVHGFPDSHVLWDGVVPLLAER-FRIVRYDNRGVGRSSVPK 73
Query: 70 SITTYTCFHIVGDIVALIDHLG-AKQVFLVAHDWGSIIGW 108
I+ YT H D A+I L + V ++AHDWGS+ W
Sbjct: 74 PISAYTMAHFADDFDAVIGELSPGEPVHVLAHDWGSVGVW 113
>EPHD_MYCBO (P66778) Probable oxidoreductase ephD (EC 1.-.-.-)
Length = 592
Score = 60.5 bits (145), Expect = 5e-09
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 12 NGIKMHIAEKGQ--GPVVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRGYGDTDSPI 69
+G+++ + +G GP V+ +HGFP+ W + L+ R + V D RG G + P
Sbjct: 15 DGVRIAVYHEGNPDGPTVVLVHGFPDSHVLWDGVVPLLAER-FRIVRYDNRGVGRSSVPK 73
Query: 70 SITTYTCFHIVGDIVALIDHLG-AKQVFLVAHDWGSIIGW 108
I+ YT H D A+I L + V ++AHDWGS+ W
Sbjct: 74 PISAYTMAHFADDFDAVIGELSPGEPVHVLAHDWGSVGVW 113
>DHA2_MYCTU (P64303) Haloalkane dehalogenase 2 (EC 3.8.1.5)
Length = 286
Score = 57.4 bits (137), Expect = 5e-08
Identities = 35/117 (29%), Positives = 58/117 (48%), Gaps = 6/117 (5%)
Query: 5 EHRTVEVNGIKMHIAEKGQGPVVLFLHGFPELWYSWRHQILTLSSRGYHAVAPDLRGYGD 64
E R + + ++H ++G GP +L HG P + +R I+ L R + VAPD G+G
Sbjct: 15 ESRWFDSSRGRIHYVDEGTGPPILLCHGNPTWSFLYRDIIVALRDR-FRCVAPDYLGFGL 73
Query: 65 TDSPISITTYTCFH--IVGDIVALIDHLGAKQVFLVAHDWGSIIGWYLCMFRPERVK 119
++ P H ++G+ V DHLG + + DWG I + + R +RV+
Sbjct: 74 SERPSGFGYQIDEHARVIGEFV---DHLGLDRYLSMGQDWGGPISMAVAVERADRVR 127
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.340 0.147 0.497
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,328,016
Number of Sequences: 164201
Number of extensions: 1240658
Number of successful extensions: 3577
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 3473
Number of HSP's gapped (non-prelim): 102
length of query: 312
length of database: 59,974,054
effective HSP length: 110
effective length of query: 202
effective length of database: 41,911,944
effective search space: 8466212688
effective search space used: 8466212688
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0109.15