BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0108.3
         (169 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BGIB_MOUSE (P97402) N-acetyllactosaminide beta-1,6-N-acetylgluco...    32  0.91
G3P_ZYMMO (P09316) Glyceraldehyde-3-phosphate dehydrogenase (EC ...    31  1.5
UD16_RABIT (Q28611) UDP-glucuronosyltransferase 1-6 precursor, m...    29  4.5
UBRB_SCHPO (O13731) Ubr11 protein                                      29  5.9

>BGIB_MOUSE (P97402) N-acetyllactosaminide
           beta-1,6-N-acetylglucosaminyl-transferase (EC 2.4.1.150)
           (N-acetylglucosaminyltransferase) (I-branching enzyme)
           (IGNT) (Large I antigen-forming
           beta-1,6-N-acetylglucosaminyltransferase)
          Length = 400

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 15/38 (39%), Positives = 18/38 (46%), Gaps = 4/38 (10%)

Query: 6   PPVGSWKFNVDGSVWQTREAGCGGVLRDCDGNWVQGFC 43
           PP  SW  N+    W   EA  GG    C G++V G C
Sbjct: 312 PPNASWTGNLRAVKWMDMEAKHGG----CQGHYVHGIC 345


>G3P_ZYMMO (P09316) Glyceraldehyde-3-phosphate dehydrogenase (EC
           1.2.1.12) (GAPDH)
          Length = 337

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 21/79 (26%), Positives = 35/79 (43%), Gaps = 4/79 (5%)

Query: 60  RTAVDLAVQRGCSPIIIETDSAEAHAAVTSAQPLI--PPYSEIVRHIRRSIPHGMKVVFD 117
           +  VD+ ++  C+ I   T+ A AH    + + LI  P   ++ R +   + H      D
Sbjct: 89  KLGVDIVME--CTGIFTNTEKASAHLTAGAKKVLISAPAKGDVDRTVVYGVNHKDLTADD 146

Query: 118 LIPREANMVADCLAQNAHV 136
            I   A+   +CLA   HV
Sbjct: 147 KIVSNASCTTNCLAPVLHV 165


>UD16_RABIT (Q28611) UDP-glucuronosyltransferase 1-6 precursor,
           microsomal (EC 2.4.1.17) (UDPGT) (UGT1*6) (UGT1-06)
           (UGT1.6) (UGT1A6)
          Length = 531

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 119 IPREANMVADCLAQNAHVFNFGVHLLHHPLMECRYLLYQD 158
           IPR     +D ++    V NF V+LL  PL  C Y  Y+D
Sbjct: 192 IPRCYTKFSDQMSFPQRVVNFLVNLLEVPLFYCLYSKYED 231


>UBRB_SCHPO (O13731) Ubr11 protein
          Length = 2052

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/44 (29%), Positives = 23/44 (51%), Gaps = 2/44 (4%)

Query: 91  QPLIPPYSEIVRHIRRSIPHGMKVVFDL--IPREANMVADCLAQ 132
           Q +IP    I+ H++   PHG  ++F +  +   +N V+ C  Q
Sbjct: 762 QGVIPQQRAILSHVQWDFPHGKNILFVMQRVAMLSNTVSSCFTQ 805


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.328    0.141    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,118,472
Number of Sequences: 164201
Number of extensions: 735673
Number of successful extensions: 1662
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1661
Number of HSP's gapped (non-prelim): 4
length of query: 169
length of database: 59,974,054
effective HSP length: 102
effective length of query: 67
effective length of database: 43,225,552
effective search space: 2896111984
effective search space used: 2896111984
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (28.5 bits)