BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0106.9
(458 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YAC3_SCHPO (Q09817) Hypothetical protein C16C9.03 in chromosome I 359 7e-99
NMD3_YEAST (P38861) Nonsense-mediated mRNA decay protein 3 328 2e-89
ZO61_XENLA (P18750) Oocyte zinc finger protein XLCOF6.1 (Fragment) 35 0.53
ZG66_XENLA (P18733) Gastrula zinc finger protein XLCGF66.1 (Frag... 34 0.90
Z341_HUMAN (Q9BYN7) Zinc finger protein 341 34 0.90
Z271_HUMAN (Q14591) Zinc finger protein 271 (Zinc finger protein... 33 1.2
DPOM_PODAN (Q01529) Probable DNA polymerase (EC 2.7.7.7) 33 1.2
XFIN_XENLA (P08045) Zinc finger protein Xfin 33 1.5
SYH_CLOPE (Q8XJ27) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 33 1.5
POLG_PYFV1 (Q05057) Genome polyprotein [Contains: 22.5 kDa prote... 33 1.5
ZB11_HUMAN (O95625) Zinc finger and BTB domain containing protei... 33 2.0
Z263_HUMAN (O14978) Zinc finger protein 263 (Zinc finger protein... 33 2.0
ZF59_MOUSE (P16373) Zinc finger protein 59 (Zfp-59) (Zinc finger... 32 2.6
Z501_HUMAN (Q96CX3) Zinc finger protein 501 32 2.6
THSA_SULSO (Q9V2S9) Thermosome alpha subunit (Thermosome subunit... 32 2.6
THSA_SULSH (P46219) Thermosome alpha subunit (Thermosome subunit... 32 2.6
ZO19_XENLA (P18742) Oocyte zinc finger protein XLCOF19 (Fragment) 32 4.4
ZG53_XENLA (P18728) Gastrula zinc finger protein XLCGF53.1 (Frag... 32 4.4
ZF35_MOUSE (P15620) Zinc finger protein 35 (Zfp-35) 31 5.8
Z445_MOUSE (Q8R2V3) Zinc finger protein 445 31 5.8
>YAC3_SCHPO (Q09817) Hypothetical protein C16C9.03 in chromosome I
Length = 498
Score = 359 bits (922), Expect = 7e-99
Identities = 187/437 (42%), Positives = 266/437 (60%), Gaps = 20/437 (4%)
Query: 24 SVLCCMCGIPMQPNAANMCVKCLSSQEDITEGLQKHINIFHCPQCESYFQHPKTWIKHLK 83
++LCC CG+P PNAA MC+ C+ DIT G+ + + HC +CE Y Q P W+ +
Sbjct: 21 TILCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHCRECERYMQPPNNWM--IA 78
Query: 84 P-ESDELLKFCLKMMKKTNKVRMVDARFIWTEPHSKRIKINVKVQKEVLNGVILEQSYLV 142
P ES EL+ CLK ++ N+VR+VDA FIWTEPHS+RIK+ + VQKE IL+QS+ V
Sbjct: 79 PLESRELMAICLKKLRGLNQVRLVDANFIWTEPHSRRIKVKLTVQKEAFTNTILQQSFQV 138
Query: 143 EYVQLEHLCDSCTRVAANPDQWVAVVQLRQHVSHRRTFFYLEQLILKHGAAARAIRIKQM 202
E+ C C R P W AV Q+RQ V H+RTF YLEQ+ILKH A + IK+
Sbjct: 139 EFYVNNTQCPDCARTYT-PHIWKAVCQVRQKVLHKRTFLYLEQIILKHKAHMNTVNIKET 197
Query: 203 HEGIDFYFSNEDHGEKFVQFIGKVAPIRSKGYNKQLVSHDTKSNNYNYRYTFSVEISPIC 262
+GIDFYF H K V+F+ V PIR KG +++L+S D KSN NY++T+S+EI PIC
Sbjct: 198 KDGIDFYFGQRAHAIKMVEFLSAVVPIRYKG-SEELISEDFKSNTANYKFTYSIEIVPIC 256
Query: 263 REDLICLPHHVALSLGNLGPLVICTKVTNSIVLLDPFTLRHCFLDASQYWRASFKSLLTS 322
++DL+CLP VA + GN+ LV+CTKV +I LDP TL+ C + S YWR F +L
Sbjct: 257 KDDLVCLPKTVAKAHGNIAQLVVCTKVGPTIRFLDPLTLQTCDMLPSIYWRTPFPALADI 316
Query: 323 RQLVEYVVLDVEEVVPSEVVTVGGTKYVLAVAQVARVSDFGKNDTIFSIKTHLGHLLNPG 382
+L E++V DV+ + P+ KY LA ++ + SD + T +THLG +LN G
Sbjct: 317 PELTEFIVADVDLLGPT------NGKYALADVELIKSSDGSTHLT----RTHLGGILNAG 366
Query: 383 DYALGYDLYGANCNDIELDKYKGGDLPHAILVKKSYVEKRLKKRGKPRSWKLKSLNME-I 441
+ L Y L N N+ D + +P ++VKK+Y + + K R+W+LK++ M+
Sbjct: 367 NTVLAYHLAVTNFNNEVYDTLREDSIPEVVIVKKTYPQTKKKN----RNWRLKTIGMQKA 422
Query: 442 DDKGRTDPDKMSSEYEL 458
+D + D ++ +YEL
Sbjct: 423 EDVKKQDIERQERDYEL 439
>NMD3_YEAST (P38861) Nonsense-mediated mRNA decay protein 3
Length = 518
Score = 328 bits (840), Expect = 2e-89
Identities = 170/425 (40%), Positives = 252/425 (59%), Gaps = 14/425 (3%)
Query: 20 QTICSVLCCMCGIPMQPNAAN-MCVKCLSSQEDITEGLQKHINIFHCPQCESYFQHPKTW 78
Q ++LCC CG P+ + MC C+ DIT+G+ + NI C CE + Q P W
Sbjct: 12 QNAATLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQW 71
Query: 79 IKHLKPESDELLKFCLKMMKKTNKVRMVDARFIWTEPHSKRIKINVKVQKEVLNGVILEQ 138
I+ + ES ELL CL+ +K VR+VDA FIWTEPHS+RI+I + VQ E + I++Q
Sbjct: 72 IR-AELESRELLAICLRRLKGLTFVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQ 130
Query: 139 SYLVEYVQLEHLCDSCTRVAANPDQWVAVVQLRQHVSHRRTFFYLEQLILKHGAAARAIR 198
++ VEY+ + C C R + + W A VQ+RQ V H+RTF +LEQLILKH A I
Sbjct: 131 TFEVEYIVIAMQCPDCAR-SYTTNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTIS 189
Query: 199 IKQMHEGIDFYFSNEDHGEKFVQFIGKVAPIRSKGYNKQLVSHDTKSNNYNYRYTFSVEI 258
I + +G+DF+++ ++H K + F+ V PI+ K +++L+S DT + Y++++SVEI
Sbjct: 190 ISEAKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKK-SEELISQDTHTGASTYKFSYSVEI 248
Query: 259 SPICREDLICLPHHVALSLGNLGPLVICTKVTNSIVLLDPFTLRHCFLDASQYWRASFKS 318
PIC++DL+ LP +A S+GN+ V+C+K++N++ +DP TL+ L S YWRA F +
Sbjct: 249 VPICKDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNA 308
Query: 319 LLTSRQLVEYVVLDVEEVVPSEVVTVGGTKYVLAVAQVARVSDFGKNDTIFSIKTHLGHL 378
L QLVE++VLDV+ + VLA VAR SD G ND ++ +++HLG +
Sbjct: 309 LADVTQLVEFIVLDVDS------TGISRGNRVLADITVARTSDLGVNDQVYYVRSHLGGI 362
Query: 379 LNPGDYALGYDLYGANCNDIELDKYKGGDLPHAILVKKSYVEKRLKKRGKPRSWKLKSLN 438
+ GD +GY + +N N D +P +LVKK Y +K K R WKLK +
Sbjct: 363 CHAGDSVMGYFIANSNYNSDLFDGLNIDYVPDVVLVKKLY----QRKSKKSRHWKLKRMA 418
Query: 439 MEIDD 443
E D
Sbjct: 419 KEHKD 423
>ZO61_XENLA (P18750) Oocyte zinc finger protein XLCOF6.1
(Fragment)
Length = 224
Score = 34.7 bits (78), Expect = 0.53
Identities = 14/46 (30%), Positives = 24/46 (51%), Gaps = 2/46 (4%)
Query: 38 AANMCVKCLSSQEDITEGLQKHIN--IFHCPQCESYFQHPKTWIKH 81
+ ++C KC + + ++T + H FHC +C YFQH +H
Sbjct: 7 SCSVCGKCFALKTELTIHCRSHSGEKAFHCTECGKYFQHRSNLRRH 52
>ZG66_XENLA (P18733) Gastrula zinc finger protein XLCGF66.1
(Fragment)
Length = 606
Score = 33.9 bits (76), Expect = 0.90
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 35 QPNAANMCVKCLSSQEDITEGLQK-HINI--FHCPQCESYFQHPKTWIKHLKPESDELLK 91
+P + + C KC ++ + Q+ HI + F C +C YF + ++H + + E
Sbjct: 496 KPYSCSECGKCFATSSQLMAHQQQVHIEVKPFSCSECGKYFLYRAHLVRHQRTHTGEKPD 555
Query: 92 FCLKMMK 98
FC + K
Sbjct: 556 FCFECGK 562
>Z341_HUMAN (Q9BYN7) Zinc finger protein 341
Length = 773
Score = 33.9 bits (76), Expect = 0.90
Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 3/53 (5%)
Query: 33 PMQPNAANMCVKCL---SSQEDITEGLQKHINIFHCPQCESYFQHPKTWIKHL 82
P + NA CVKC+ S+ E + LQ + F CP C+ F + +HL
Sbjct: 452 PKKDNAVYKCVKCVNKYSTPEALEHHLQTATHNFPCPHCQKVFPCERYLRRHL 504
>Z271_HUMAN (Q14591) Zinc finger protein 271 (Zinc finger protein
HZF7) (Zinc finger protein ZNFphex133)
Length = 498
Score = 33.5 bits (75), Expect = 1.2
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 35 QPNAANMCVKCLSSQEDITEGLQKHI--NIFHCPQCESYFQHPKTWIKHLKPESDELL 90
+P A N C K S D+T+ + H +HC CE F I H + + E L
Sbjct: 424 KPYACNQCDKSFSQSSDLTKHQRVHSGEKPYHCNSCEKAFSQSSDLILHQRIHTGEKL 481
>DPOM_PODAN (Q01529) Probable DNA polymerase (EC 2.7.7.7)
Length = 1197
Score = 33.5 bits (75), Expect = 1.2
Identities = 41/205 (20%), Positives = 80/205 (39%), Gaps = 38/205 (18%)
Query: 215 HGEKFVQFIGKVAPIRSKGYNKQLVSHDTKSNNYNYRYTFSVEISPICREDLICLPHHVA 274
+G F++ + K +SK N++ ++ D+K+ Y Y+ EI I
Sbjct: 233 NGINFIKLVNK----KSKDLNQEFINFDSKTRFYRYKLN---EIEYI------------- 272
Query: 275 LSLGNLGPLVICTKVTNSIVLLDPFTLRHCFLDASQYWRASFKSLLTSRQLVEYVV-LDV 333
+++ N+ T+ +I L+ F + LD + + SRQ+ + D
Sbjct: 273 ITVSNISK----TETVKTIYLMTGFKFKDNILD------KELTTKIFSRQIGNTTIEFDG 322
Query: 334 EEVVPSEVVTVGGTKYVLAVAQVARVSDFGKNDTIFSIKTHLGHLLNPGDYALGYDLYGA 393
+++ E+ K + +D F ++T + N YALG+
Sbjct: 323 ADIINKEI----KLKLPIIRLNYKPFTDLNSRIGTFDLETFRDYNSNSAVYALGFSTLSM 378
Query: 394 NCNDIELDKY---KGGDLPHAILVK 415
+ D + Y K G+ H I++K
Sbjct: 379 SKTDKKTSMYYLTKDGNTSHEIIIK 403
>XFIN_XENLA (P08045) Zinc finger protein Xfin
Length = 1350
Score = 33.1 bits (74), Expect = 1.5
Identities = 15/54 (27%), Positives = 23/54 (41%), Gaps = 2/54 (3%)
Query: 35 QPNAANMCVKCLSSQEDITEGLQKHINI--FHCPQCESYFQHPKTWIKHLKPES 86
+P C KC D+ + + H +HCP C+ F + IKH + S
Sbjct: 860 KPYKCEQCQKCFIQNSDLVKHQRIHTGEKPYHCPDCDKRFTEGSSLIKHQRIHS 913
>SYH_CLOPE (Q8XJ27) Histidyl-tRNA synthetase (EC 6.1.1.21)
(Histidine--tRNA ligase) (HisRS)
Length = 415
Score = 33.1 bits (74), Expect = 1.5
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 54 EGLQKHINIFHCPQCESYFQHPKTWIKHLKPESDELLKFCLKMMKKTNKVRMVDARFIWT 113
+GL +IN CP+C + F + ++LK D L + C +K N +R++D +
Sbjct: 158 KGLSLNINSLGCPKCRAKFN--EALKQYLKENYDNLCETCKTRFEK-NPMRIIDCK---- 210
Query: 114 EPHSKRIKINVKVQKEVLNGVILEQS 139
KR K VK +L+ + E S
Sbjct: 211 ---EKRCKEIVKEAPSILDYICEECS 233
>POLG_PYFV1 (Q05057) Genome polyprotein [Contains: 22.5 kDa protein;
26 kDa protein; 31 kDa protein; Probable RNA-directed
RNA polymerase (EC 2.7.7.48)]
Length = 3027
Score = 33.1 bits (74), Expect = 1.5
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 49 QEDITEGLQKHINIFHCPQCE-SYFQHPKTWIKHLKPESDELLKFCLKMMKKTNKVRMVD 107
+E + +G Q I+++H P + S + K K + E+ KFCL +K + V + D
Sbjct: 881 EEALGDGWQSPISVWHNPNTQLSKCKITKISNKKISKETYHGKKFCLMQLKSIDIVAVDD 940
Query: 108 ARFIW 112
RF W
Sbjct: 941 RRFSW 945
>ZB11_HUMAN (O95625) Zinc finger and BTB domain containing protein
11
Length = 1053
Score = 32.7 bits (73), Expect = 2.0
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 42 CVKCLSSQEDITEGLQKHINI--FHCPQCESYFQHPKTWIKHLKPES 86
C K D+ + + KH+ + F C C+ + K W H+K S
Sbjct: 771 CEKSFFEARDLRQHMNKHLGVKPFQCQFCDKCYSWKKDWYSHVKSHS 817
>Z263_HUMAN (O14978) Zinc finger protein 263 (Zinc finger protein
FPM315)
Length = 683
Score = 32.7 bits (73), Expect = 2.0
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 35 QPNAANMCVKCLSSQEDITEGLQKHINI--FHCPQCESYFQHPKTWIKHLKPESDE 88
+P N+C KC S ++ + H + CP+C F H ++H + + E
Sbjct: 460 KPYQCNICGKCFSCNSNLHRHQRTHTGEKPYKCPECGEIFAHSSNLLRHQRIHTGE 515
>ZF59_MOUSE (P16373) Zinc finger protein 59 (Zfp-59) (Zinc finger
protein Mfg-2) (Fragment)
Length = 406
Score = 32.3 bits (72), Expect = 2.6
Identities = 22/69 (31%), Positives = 32/69 (45%), Gaps = 5/69 (7%)
Query: 40 NMCVKCLSSQEDITEGLQKHI--NIFHCPQCESYFQHPKTWIKHLKPESD---ELLKFCL 94
N+C K Q+ ++E L+ H N F C C S F H KHL +D K C
Sbjct: 200 NVCGKAFRLQDILSEHLKTHTEENPFKCKLCGSSFPHKYQLNKHLTVHTDGKPYQCKECG 259
Query: 95 KMMKKTNKV 103
K ++ +K+
Sbjct: 260 KCFRQRSKL 268
>Z501_HUMAN (Q96CX3) Zinc finger protein 501
Length = 262
Score = 32.3 bits (72), Expect = 2.6
Identities = 15/56 (26%), Positives = 27/56 (47%), Gaps = 2/56 (3%)
Query: 35 QPNAANMCVKCLSSQEDITEGLQKHINI--FHCPQCESYFQHPKTWIKHLKPESDE 88
+P + C C Q ++T+ L+ H + C +CE FQ ++HL+ + E
Sbjct: 39 KPYVCSECGSCFRKQSNLTQHLRIHTGEKPYKCNECEKAFQTKAILVQHLRIHTGE 94
>THSA_SULSO (Q9V2S9) Thermosome alpha subunit (Thermosome subunit 1)
(Chaperonin alpha subunit) (Thermophilic factor 55
alpha) (TF55-alpha)
Length = 559
Score = 32.3 bits (72), Expect = 2.6
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 343 TVGGTKYVLAVAQVARVSDFGKNDTIFSIKTHLGHLLNPGDYALGYDLYGANCNDIELDK 402
T +K++ A++ ++ D + ++ L G Y + DL I++DK
Sbjct: 162 TTLASKFIAEGAELNKIIDM-----VIDAIVNVAEPLPNGGYNVSLDL-------IKIDK 209
Query: 403 YKGGDLPHAILVKKSYVEKRLKKRGKPR 430
KGG + ++LVK ++K + G PR
Sbjct: 210 KKGGSIEDSVLVKGLVLDKEVVHPGMPR 237
>THSA_SULSH (P46219) Thermosome alpha subunit (Thermosome subunit 1)
(Chaperonin alpha subunit) (Thermophilic factor 55
alpha) (TF55-alpha) (Ring complex alpha subunit)
(Thermophilic factor 56)
Length = 560
Score = 32.3 bits (72), Expect = 2.6
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 343 TVGGTKYVLAVAQVARVSDFGKNDTIFSIKTHLGHLLNPGDYALGYDLYGANCNDIELDK 402
T +K++ A++ ++ D + ++ L G Y + DL I++DK
Sbjct: 162 TTLASKFIAEGAELNKIIDM-----VIDAIVNVAEPLPNGGYNVSLDL-------IKIDK 209
Query: 403 YKGGDLPHAILVKKSYVEKRLKKRGKPR 430
KGG + ++LVK ++K + G PR
Sbjct: 210 KKGGSIEDSVLVKGLVLDKEVVHPGMPR 237
>ZO19_XENLA (P18742) Oocyte zinc finger protein XLCOF19 (Fragment)
Length = 168
Score = 31.6 bits (70), Expect = 4.4
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 35 QPNAANMCVKCLSSQEDITEGLQKHINI--FHCPQCESYFQHPKTWIKHLKPESDE 88
+P + C K + ++ +T+ H + C QCE YF H +HLK E
Sbjct: 4 KPFPCSECGKRFARRQHLTDHQSSHTGEKPYACSQCEKYFPHRSNLNRHLKLHKGE 59
>ZG53_XENLA (P18728) Gastrula zinc finger protein XLCGF53.1
(Fragment)
Length = 516
Score = 31.6 bits (70), Expect = 4.4
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 35 QPNAANMCVKCLSSQEDITEGLQKHINI--FHCPQCESYFQHPKTWIKHLKPESDE 88
+P + C K + ++ +T+ H + C QCE YF H +HLK E
Sbjct: 352 KPFPCSECGKRFARRQHLTDHQSSHTGEKPYACSQCEKYFPHRSNLNRHLKLHKGE 407
>ZF35_MOUSE (P15620) Zinc finger protein 35 (Zfp-35)
Length = 580
Score = 31.2 bits (69), Expect = 5.8
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 35 QPNAANMCVKCLSSQEDITEGLQKHI--NIFHCPQCESYFQHPKTWIKHLKPESDE 88
+P N+C K S D+T+ + H +HC C F+ I H + + E
Sbjct: 438 KPYTCNLCSKSFSQSSDLTKHQRVHSGEKPYHCSSCNKAFRQSSDLILHHRVHTGE 493
>Z445_MOUSE (Q8R2V3) Zinc finger protein 445
Length = 986
Score = 31.2 bits (69), Expect = 5.8
Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 28/165 (16%)
Query: 57 QKHINIFHCPQCESYFQHPKTWIKHLKPESDELLKFCLKMMKKTNKVRMVDARFIWTEPH 116
+KH+ HC QC F I+H + + E C + K F W
Sbjct: 550 RKHL---HCNQCGKNFSCKSYAIEHQRIHTQEKPYKCTRCRK----------TFRWKSNF 596
Query: 117 SKRIKINVK-VQKEVLNGVILEQSY----LVEYVQLEHLCDSCTRVAANPDQWVAVVQLR 171
S+ +K++ K V K+ +QSY ++ V+ C +C + + R
Sbjct: 597 SRHMKLHHKEVYKQEKRQEDFKQSYRQSQVISTVEKTFPCQNCGKTFTQKKS--LIEHQR 654
Query: 172 QHVSHR--------RTFFYLEQLILKHGAAARAIRIKQMHEGIDF 208
H + TF Y I+ AI+IK H + F
Sbjct: 655 IHTGEKPYQCSGCGETFTYRSSYIIHMKRTQHAIKIKPEHGCLTF 699
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,521,988
Number of Sequences: 164201
Number of extensions: 2362902
Number of successful extensions: 5757
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 5698
Number of HSP's gapped (non-prelim): 83
length of query: 458
length of database: 59,974,054
effective HSP length: 114
effective length of query: 344
effective length of database: 41,255,140
effective search space: 14191768160
effective search space used: 14191768160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0106.9