BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0105.5
(231 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GCSB_CHLTE (Q8KAN3) Probable glycine dehydrogenase [decarboxylat... 34 0.33
MN1_HUMAN (Q10571) Probable tumor suppressor protein MN1 32 1.3
HXDB_MOUSE (P23813) Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5) 32 1.6
HMRO_DROME (P10181) Homeobox protein rough 32 1.6
PO33_HUMAN (P20264) POU domain, class 3, transcription factor 3 ... 31 2.2
GCSB_NITEU (Q82WQ3) Probable glycine dehydrogenase [decarboxylat... 31 2.2
FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein) 31 2.2
ATX7_HUMAN (O15265) Ataxin-7 (Spinocerebellar ataxia type 7 prot... 31 2.2
GCSB_THETN (Q8RCW2) Probable glycine dehydrogenase [decarboxylat... 31 2.8
QUIA_ACIAD (Q59086) Quinate/shikimate dehydrogenase [Pyrroloquin... 30 3.7
GCSB_TREDE (P62031) Probable glycine dehydrogenase [decarboxylat... 30 3.7
GCSB_THEAC (Q9HII2) Probable glycine dehydrogenase [decarboxylat... 30 3.7
SHK1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protei... 30 4.8
GCSB_STAEP (Q8CMM1) Probable glycine dehydrogenase [decarboxylat... 30 4.8
GCSB_STAAW (Q8NWD0) Probable glycine dehydrogenase [decarboxylat... 30 4.8
GCSB_STAAN (P99168) Probable glycine dehydrogenase [decarboxylat... 30 4.8
GCSB_STAAM (P64219) Probable glycine dehydrogenase [decarboxylat... 30 4.8
GCSB_OCEIH (Q8CXE1) Probable glycine dehydrogenase [decarboxylat... 30 4.8
GCSB_LISMO (Q8Y7D3) Probable glycine dehydrogenase [decarboxylat... 30 4.8
GCSB_LISIN (Q92C04) Probable glycine dehydrogenase [decarboxylat... 30 4.8
>GCSB_CHLTE (Q8KAN3) Probable glycine dehydrogenase
[decarboxylating] subunit 2 (EC 1.4.4.2) (Glycine
decarboxylase subunit 2) (Glycine cleavage system
P-protein subunit 2)
Length = 486
Score = 33.9 bits (76), Expect = 0.33
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 26 NNHKASPSPYGGGGGGSSPKRAACTFITVFLLAVGITLLVLWLVYRPHKPRFTVVGAAVY 85
N HK +P+GGGG GS P VG++ ++ + P +F G Y
Sbjct: 266 NLHKTFSAPHGGGGPGSGP--------------VGVSERLVEFLPVPVIEKFEKDGQTRY 311
Query: 86 ALNTTSPPLLSAAL----QFNVLIR 106
LN++ P + + F+VL+R
Sbjct: 312 RLNSSKPNTIGRMMNFYGNFSVLVR 336
>MN1_HUMAN (Q10571) Probable tumor suppressor protein MN1
Length = 1319
Score = 32.0 bits (71), Expect = 1.3
Identities = 17/43 (39%), Positives = 22/43 (50%), Gaps = 5/43 (11%)
Query: 7 PPKGQNQHHHLP--PPNKIQ---MNNHKASPSPYGGGGGGSSP 44
PP+G H P PP + M+N ++P YGGGGG P
Sbjct: 1084 PPRGVGAGEHGPKAPPPALGLGIMSNSTSTPDSYGGGGGPGHP 1126
>HXDB_MOUSE (P23813) Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5)
Length = 323
Score = 31.6 bits (70), Expect = 1.6
Identities = 17/46 (36%), Positives = 20/46 (42%)
Query: 2 EEDPNPPKGQNQHHHLPPPNKIQMNNHKASPSPYGGGGGGSSPKRA 47
E P PP Q P P + + K P P GGGGGS +A
Sbjct: 168 EAAPGPPFAGPQPQPAPAPPQPEGAADKGDPKPGAGGGGGSPCAKA 213
>HMRO_DROME (P10181) Homeobox protein rough
Length = 350
Score = 31.6 bits (70), Expect = 1.6
Identities = 13/42 (30%), Positives = 19/42 (44%)
Query: 3 EDPNPPKGQNQHHHLPPPNKIQMNNHKASPSPYGGGGGGSSP 44
+ P+ Q+ HHH PP + SP P GG ++P
Sbjct: 116 QHPSQQHQQHHHHHHHPPQLVHQKLSYVSPPPAIAAGGAANP 157
>PO33_HUMAN (P20264) POU domain, class 3, transcription factor 3
(Brain-specific homeobox/POU domain protein 1) (Brain-1)
(Brn-1 protein)
Length = 500
Score = 31.2 bits (69), Expect = 2.2
Identities = 14/42 (33%), Positives = 21/42 (49%), Gaps = 1/42 (2%)
Query: 3 EDPNPPKGQNQHHHLPPPNKIQMNNHKASPSPYGGGGGGSSP 44
+ P + + HHH P+ + H P +GGGGGG+ P
Sbjct: 263 DTPELAEHHHHHHHHAHPHPPHPH-HAQGPPHHGGGGGGAGP 303
>GCSB_NITEU (Q82WQ3) Probable glycine dehydrogenase
[decarboxylating] subunit 2 (EC 1.4.4.2) (Glycine
decarboxylase subunit 2) (Glycine cleavage system
P-protein subunit 2)
Length = 483
Score = 31.2 bits (69), Expect = 2.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 23 IQMNNHKASPSPYGGGGGGSSP 44
I MN HK +P+GGGG G++P
Sbjct: 258 IHMNLHKTFSTPHGGGGPGAAP 279
>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)
Length = 518
Score = 31.2 bits (69), Expect = 2.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 10 GQNQHHHLPPPNKIQMNNHKASPSPYGGGGGGS 42
GQ Q + PP Q N + +S GGGGGG+
Sbjct: 145 GQQQSSYNPPQGYGQQNQYNSSSGGGGGGGGGN 177
>ATX7_HUMAN (O15265) Ataxin-7 (Spinocerebellar ataxia type 7
protein)
Length = 892
Score = 31.2 bits (69), Expect = 2.2
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Query: 2 EEDPNPPKGQNQHHHLPPPNKIQMNNHKASPSPYGGGGGGSSPKRAA 48
++ P PP+ Q Q H PPP + + P GG G +S AA
Sbjct: 37 QQQPPPPQPQRQQHPPPPPRRTR---------PEDGGPGAASTSAAA 74
>GCSB_THETN (Q8RCW2) Probable glycine dehydrogenase
[decarboxylating] subunit 2 (EC 1.4.4.2) (Glycine
decarboxylase subunit 2) (Glycine cleavage system
P-protein subunit 2)
Length = 485
Score = 30.8 bits (68), Expect = 2.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 23 IQMNNHKASPSPYGGGGGGSSP---KRAACTFITV 54
+ +N HK +P+GGGG GS P K+ F+ V
Sbjct: 267 VHLNLHKTFSTPHGGGGPGSGPVGVKKELADFLPV 301
>QUIA_ACIAD (Q59086) Quinate/shikimate dehydrogenase
[Pyrroloquinoline-quinone] (EC 1.1.99.25)
(NAD(P)-independent quinate dehydrogenase)
Length = 809
Score = 30.4 bits (67), Expect = 3.7
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 146 QVSLSPVIGGTPMPVTVEVANGLAMDESYGVVGLKLVFLGRVKW 189
+V+ +P I GT + V +A+ +A D GV+ V G+++W
Sbjct: 347 EVTSAPTIAGTTIVVGSRIADNVAADMPGGVIRAYDVITGKLRW 390
>GCSB_TREDE (P62031) Probable glycine dehydrogenase
[decarboxylating] subunit 2 (EC 1.4.4.2) (Glycine
decarboxylase subunit 2) (Glycine cleavage system
P-protein subunit 2)
Length = 482
Score = 30.4 bits (67), Expect = 3.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 23 IQMNNHKASPSPYGGGGGGSSP 44
+ +N HK +P+GGGG GS P
Sbjct: 258 VHLNLHKTFSTPHGGGGPGSGP 279
>GCSB_THEAC (Q9HII2) Probable glycine dehydrogenase
[decarboxylating] subunit 2 (EC 1.4.4.2) (Glycine
decarboxylase subunit 2) (Glycine cleavage system
P-protein subunit 2)
Length = 472
Score = 30.4 bits (67), Expect = 3.7
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 23 IQMNNHKASPSPYGGGGGGSSPKRAACTFITVFL 56
+ N HK+ +P+GGGG G+ P A +F++ FL
Sbjct: 262 VHFNLHKSFATPHGGGGPGAGPV-AVKSFLSDFL 294
>SHK1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1
(Shank1) (GKAP/SAPAP interacting protein) (SPANK-1)
(Synamon) (Somatostatin receptor interacting protein)
(SSTR interacting protein) (SSTRIP)
Length = 2167
Score = 30.0 bits (66), Expect = 4.8
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 15/59 (25%)
Query: 7 PPKGQNQHHHLPPPNKI-------------QMNNHKASP--SPYGGGGGGSSPKRAACT 50
PP G ++ + +P P I Q ++ +A P P G GGGGSSP A T
Sbjct: 1150 PPAGPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPDGAGGGGSSPSPAPAT 1208
>GCSB_STAEP (Q8CMM1) Probable glycine dehydrogenase
[decarboxylating] subunit 2 (EC 1.4.4.2) (Glycine
decarboxylase subunit 2) (Glycine cleavage system
P-protein subunit 2)
Length = 502
Score = 30.0 bits (66), Expect = 4.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 23 IQMNNHKASPSPYGGGGGGSSP 44
+ +N HK P+GGGG GS P
Sbjct: 267 VHLNLHKTFTGPHGGGGPGSGP 288
>GCSB_STAAW (Q8NWD0) Probable glycine dehydrogenase
[decarboxylating] subunit 2 (EC 1.4.4.2) (Glycine
decarboxylase subunit 2) (Glycine cleavage system
P-protein subunit 2)
Length = 490
Score = 30.0 bits (66), Expect = 4.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 23 IQMNNHKASPSPYGGGGGGSSP 44
+ +N HK P+GGGG GS P
Sbjct: 267 VHLNLHKTFTGPHGGGGPGSGP 288
>GCSB_STAAN (P99168) Probable glycine dehydrogenase
[decarboxylating] subunit 2 (EC 1.4.4.2) (Glycine
decarboxylase subunit 2) (Glycine cleavage system
P-protein subunit 2)
Length = 490
Score = 30.0 bits (66), Expect = 4.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 23 IQMNNHKASPSPYGGGGGGSSP 44
+ +N HK P+GGGG GS P
Sbjct: 267 VHLNLHKTFTGPHGGGGPGSGP 288
>GCSB_STAAM (P64219) Probable glycine dehydrogenase
[decarboxylating] subunit 2 (EC 1.4.4.2) (Glycine
decarboxylase subunit 2) (Glycine cleavage system
P-protein subunit 2)
Length = 490
Score = 30.0 bits (66), Expect = 4.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 23 IQMNNHKASPSPYGGGGGGSSP 44
+ +N HK P+GGGG GS P
Sbjct: 267 VHLNLHKTFTGPHGGGGPGSGP 288
>GCSB_OCEIH (Q8CXE1) Probable glycine dehydrogenase
[decarboxylating] subunit 2 (EC 1.4.4.2) (Glycine
decarboxylase subunit 2) (Glycine cleavage system
P-protein subunit 2)
Length = 485
Score = 30.0 bits (66), Expect = 4.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 23 IQMNNHKASPSPYGGGGGGSSP 44
+ +N HK P+GGGG GS P
Sbjct: 267 VHLNLHKTFTGPHGGGGPGSGP 288
>GCSB_LISMO (Q8Y7D3) Probable glycine dehydrogenase
[decarboxylating] subunit 2 (EC 1.4.4.2) (Glycine
decarboxylase subunit 2) (Glycine cleavage system
P-protein subunit 2)
Length = 488
Score = 30.0 bits (66), Expect = 4.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 23 IQMNNHKASPSPYGGGGGGSSP 44
+ +N HK P+GGGG GS P
Sbjct: 268 VHLNLHKTFTGPHGGGGPGSGP 289
>GCSB_LISIN (Q92C04) Probable glycine dehydrogenase
[decarboxylating] subunit 2 (EC 1.4.4.2) (Glycine
decarboxylase subunit 2) (Glycine cleavage system
P-protein subunit 2)
Length = 488
Score = 30.0 bits (66), Expect = 4.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 23 IQMNNHKASPSPYGGGGGGSSP 44
+ +N HK P+GGGG GS P
Sbjct: 268 VHLNLHKTFTGPHGGGGPGSGP 289
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.140 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,418,038
Number of Sequences: 164201
Number of extensions: 1345061
Number of successful extensions: 4530
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4470
Number of HSP's gapped (non-prelim): 74
length of query: 231
length of database: 59,974,054
effective HSP length: 107
effective length of query: 124
effective length of database: 42,404,547
effective search space: 5258163828
effective search space used: 5258163828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0105.5