BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0104.7
         (76 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

FX42_MOUSE (Q6PDJ6) F-box only protein 42                              35  0.027
FX42_HUMAN (Q6P3S6) F-box only protein 42                              35  0.027
FX39_HUMAN (Q8N4B4) F-box only protein 39                              32  0.39
TRCB_XENLA (Q91854) Beta-TrCP (Beta-transducin repeat-containing...    27  7.3
VN53_ROTS1 (P15687) Nonstructural RNA-binding protein 53 (NS53) ...    27  9.5
TAT_CAEVG (P21125) Trans-activating transcriptional regulatory p...    27  9.5

>FX42_MOUSE (Q6PDJ6) F-box only protein 42
          Length = 717

 Score = 35.4 bits (80), Expect = 0.027
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 7  SPFPDEVLERVLGMVKSRKDRSSVSLVCKEWY 38
          S  P+EVLE +L  +   ++  + +LVCK+WY
Sbjct: 48 SELPEEVLEYILSFLSPYQEHKTAALVCKQWY 79


>FX42_HUMAN (Q6P3S6) F-box only protein 42
          Length = 717

 Score = 35.4 bits (80), Expect = 0.027
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 7  SPFPDEVLERVLGMVKSRKDRSSVSLVCKEWY 38
          S  P+EVLE +L  +   ++  + +LVCK+WY
Sbjct: 48 SELPEEVLEYILSFLSPYQEHKTAALVCKQWY 79


>FX39_HUMAN (Q8N4B4) F-box only protein 39
          Length = 442

 Score = 31.6 bits (70), Expect = 0.39
 Identities = 18/43 (41%), Positives = 25/43 (57%), Gaps = 5/43 (11%)

Query: 10 PDEVLERVLGMVKSRKDRSSVSLVCKEW----YNAERWSRRSV 48
          PD  L RV   +  R DRS  +LVC++W    Y+AE W  R++
Sbjct: 20 PDLCLCRVFWWLGDR-DRSRAALVCRKWNQMMYSAELWRYRTI 61


>TRCB_XENLA (Q91854) Beta-TrCP (Beta-transducin repeat-containing
           protein)
          Length = 518

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 12/28 (42%), Positives = 16/28 (56%), Gaps = 1/28 (3%)

Query: 11  DEVLERVLGMVKSRKDRSSVSLVCKEWY 38
           D + E +L  + + K   S  LVCKEWY
Sbjct: 119 DHIAENILSYLDA-KSLCSAELVCKEWY 145


>VN53_ROTS1 (P15687) Nonstructural RNA-binding protein 53 (NS53)
           (NCVP2)
          Length = 495

 Score = 26.9 bits (58), Expect = 9.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 1   NILNQASPFPDEVLERVLGMVKSRKDRSSVSLVCKEWYN 39
           ++ N   P  D+V+ +   M+K RK R+   +   EWYN
Sbjct: 100 DLYNIIFPINDKVIRKFERMIKQRKCRNQYKI---EWYN 135


>TAT_CAEVG (P21125) Trans-activating transcriptional regulatory
          protein (Protein S)
          Length = 87

 Score = 26.9 bits (58), Expect = 9.5
 Identities = 10/28 (35%), Positives = 20/28 (70%)

Query: 10 PDEVLERVLGMVKSRKDRSSVSLVCKEW 37
          P+E+L+R L M++S ++R+ V    ++W
Sbjct: 36 PEEILQRWLAMLRSGRNRNKVYREMQKW 63


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.317    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,160,489
Number of Sequences: 164201
Number of extensions: 238090
Number of successful extensions: 643
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 6
length of query: 76
length of database: 59,974,054
effective HSP length: 52
effective length of query: 24
effective length of database: 51,435,602
effective search space: 1234454448
effective search space used: 1234454448
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)