BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0103.9
(705 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ERF2_PICPI (P23637) Eukaryotic peptide chain release factor GTP-... 50 2e-05
MYHB_HUMAN (P35749) Myosin heavy chain, smooth muscle isoform (S... 44 0.002
RA50_SULTO (Q96YR5) DNA double-strand break repair rad50 ATPase 43 0.003
XYNA_RUMFL (P29126) Bifunctional endo-1,4-beta-xylanase xylA pre... 41 0.009
MYHB_MOUSE (O08638) Myosin heavy chain, smooth muscle isoform (S... 41 0.012
MYHB_RABIT (P35748) Myosin heavy chain, smooth muscle isoform (S... 40 0.016
RA50_METJA (Q58718) DNA double-strand break repair rad50 ATPase 40 0.028
IF2_AQUAE (O67825) Translation initiation factor IF-2 40 0.028
RNQ1_YEAST (P25367) [PIN+] prion protein RNQ1 (Rich in asparagin... 39 0.036
NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa neurof... 39 0.036
GPR1_YEAST (Q12361) G protein-coupled receptor GPR1 39 0.036
MOES_MOUSE (P26041) Moesin (Membrane-organizing extension spike ... 39 0.047
YB56_METJA (Q58556) Cell division cycle protein 48 homolog MJ1156 39 0.061
USO1_YEAST (P25386) Intracellular protein transport protein USO1 39 0.061
SM1A_RAT (Q9Z1M9) Structural maintenance of chromosome 1-like 1 ... 39 0.061
SM1A_HUMAN (Q14683) Structural maintenance of chromosome 1-like ... 39 0.061
SM1A_BOVIN (O97593) Structural maintenance of chromosome 1-like ... 39 0.061
MYHB_RAT (Q63862) Myosin heavy chain, smooth muscle isoform (SMM... 39 0.061
MOES_RAT (O35763) Moesin (Membrane-organizing extension spike pr... 39 0.061
SMC1_XENLA (O93308) Structural maintenance of chromosome 1 protein 38 0.080
>ERF2_PICPI (P23637) Eukaryotic peptide chain release factor
GTP-binding subunit (ERF2) (Translation release factor
3) (ERF3) (ERF-3) (Omnipotent suppressor protein 2)
Length = 741
Score = 50.1 bits (118), Expect = 2e-05
Identities = 49/175 (28%), Positives = 72/175 (41%), Gaps = 16/175 (9%)
Query: 290 GNSQNNPYSNTYNLGWRNHPNFSWREQNNFNQGGNNQRQYSNQRFQSQNSGPQ-QNQDQG 348
G S N Y+ N G + N++ NN NN NQ + + NS PQ Q+Q Q
Sbjct: 99 GYSNYNSYNTNSNQG--GYSNYNNNYANNSYNNNNNYNNNYNQGYNNYNSQPQGQDQQQE 156
Query: 349 SGNGKKSLEEL---MENFINKADTSFKNHEAAIKSLETQVGQMAKQMSERPPGMFPSDTV 405
+G+G+ SLE+ + +NK +T K + T + + E P S T
Sbjct: 157 TGSGQMSLEDYQKQQKESLNKLNTKPKKVLKLNLNSSTVKAPIVTKKKEEEPVNQESKTE 216
Query: 406 INPKENCSAITLRNIEPLGENKKKQKEKEEEKRKVELENKFTKVLFPPFPTNIAK 460
KE ++N EP + + K EE+ KVE V FP + K
Sbjct: 217 EPAKEE-----IKNQEP-----AEAENKVEEESKVEAPTAAKPVSESEFPASTPK 261
Score = 34.3 bits (77), Expect = 1.2
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 37/165 (22%)
Query: 314 REQNNFNQGG----NNQRQYSNQR--FQSQNSGPQQNQDQGSGNGKKSLEELMENFINKA 367
++Q N+NQGG NN+ YSN R + + N G N + + N + N N A
Sbjct: 66 QQQQNYNQGGYNNYNNRGGYSNNRGGYNNSNRGGYSNYNSYNTNSNQGGYSNYNN--NYA 123
Query: 368 DTSFKNH------------------EAAIKSLETQVGQMAKQMSERPPGMFPSDTVINPK 409
+ S+ N+ + + ET GQM+ + ++ + PK
Sbjct: 124 NNSYNNNNNYNNNYNQGYNNYNSQPQGQDQQQETGSGQMSLEDYQKQQKESLNKLNTKPK 183
Query: 410 E----NCSAITLRNIEPLGENKKK-----QKEKEEEKRKVELENK 445
+ N ++ T++ P+ KK+ Q+ K EE K E++N+
Sbjct: 184 KVLKLNLNSSTVK--APIVTKKKEEEPVNQESKTEEPAKEEIKNQ 226
>MYHB_HUMAN (P35749) Myosin heavy chain, smooth muscle isoform (SMMHC)
Length = 1972
Score = 43.5 bits (101), Expect = 0.002
Identities = 85/418 (20%), Positives = 165/418 (39%), Gaps = 52/418 (12%)
Query: 112 EDLAKKFTKKLFPRTLLRKLKNDILVFKQE------DTENLHEALERFKKLLRKCPQHNL 165
E+L +++ +K L K KN + +QE D +N + + +K RK Q
Sbjct: 1402 ENLTQQYEEKAAAYDKLEKTKNRL---QQELDDLVVDLDNQRQLVSNLEKKQRKFDQ--- 1455
Query: 166 TLGVQVERFYDGLADSARSNLEAAASGEFEALSAQAGWNLINKMAESAVNSTNDRQNRRG 225
L + + AD A E +ALS + + E A+ + + +
Sbjct: 1456 -LLAEEKNISSKYADERDRAEAEAREKETKALS-------LARALEEALEAKEELERTNK 1507
Query: 226 VLEIEAYDRMVASNKQLSQQMTTIQRQFQAAKISNVDSIHCGTCGGPHASEECGTYFDE- 284
+L+ E D +V+S + + + +++ +A + EE T +E
Sbjct: 1508 MLKAEMED-LVSSKDDVGKNVHELEKSKRALETQ---------------MEEMKTQLEEL 1551
Query: 285 --EVKVLGNSQNNPYSNTYNLGWRNHPNFSWREQNNFNQGGNNQRQYSNQRFQSQNSGPQ 342
E++ +++ N L + + R++ N + QRQ + ++ +
Sbjct: 1552 EDELQATEDAKLRLEVNMQALKGQFERDLQARDEQNEEKRRQLQRQLHEYETELED---E 1608
Query: 343 QNQDQGSGNGKKSLEELMENFINKADTSFKNHEAAIKSLETQVGQMAKQMSERPPGMFPS 402
+ Q + KK LE +++ +AD++ K E AIK L QM E
Sbjct: 1609 RKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRELEDARASR 1668
Query: 403 DTVI-NPKEN------CSAITLRNIEPLGENKKKQKEKEEEKRKVELENKFTKVLFPPFP 455
D + KEN A ++ E L ++ +K+ + EK EL + L
Sbjct: 1669 DEIFATAKENEKKAKSLEADLMQLQEDLAAAERARKQADLEKE--ELAEELASSLSGRNA 1726
Query: 456 TNIAKRRLEKQFSKFISMFKKLRVEL-PFSEVLEKMPQYAKFMKEILSKKRRLSEENE 512
KRRLE + ++ ++ + + S+ + K Q A+ + L+ +R +++NE
Sbjct: 1727 LQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATQQAEQLSNELATERSTAQKNE 1784
>RA50_SULTO (Q96YR5) DNA double-strand break repair rad50 ATPase
Length = 879
Score = 42.7 bits (99), Expect = 0.003
Identities = 39/123 (31%), Positives = 62/123 (49%), Gaps = 18/123 (14%)
Query: 409 KENCSAITLRNIEPL---GENKKKQKEKEEEKRKVELEN------KFTKVLFPPFPTNIA 459
K N I L+++E EN+K QKEKE E K ELE+ K K N
Sbjct: 178 KINNKIIELQSLEKYKNESENQKIQKEKELENIKRELEDLNIKEEKERKKYEDIVKLNEE 237
Query: 460 KRRLEKQFSKFISMFKKLRVELPFSEVLEKM-------PQYAKFMKEILSKKRRLSEENE 512
+ + EK++ + IS+ KL+ ++ SE+ E++ + K K+IL K + + E+ +
Sbjct: 238 EEKKEKRYVELISLLNKLKDDI--SELREEVKDENRLREEKEKLEKDILEKDKLIEEKEK 295
Query: 513 IIE 515
IIE
Sbjct: 296 IIE 298
>XYNA_RUMFL (P29126) Bifunctional endo-1,4-beta-xylanase xylA
precursor (EC 3.2.1.8)
Length = 954
Score = 41.2 bits (95), Expect = 0.009
Identities = 26/76 (34%), Positives = 38/76 (49%), Gaps = 16/76 (21%)
Query: 291 NSQNNPYSNTYNLGWRNHPNFS----------WREQNNFN---QGGNNQRQYSNQRFQSQ 337
N+QNN N +N GW N+ N++ W QNN+N Q N+ Q++NQ +
Sbjct: 377 NNQNNNQQNAWN-GWDNNNNWNQNNQQQNNWDWNNQNNWNNNQQQNNDWNQWNNQ--NNW 433
Query: 338 NSGPQQNQDQGSGNGK 353
N+ QQN D N +
Sbjct: 434 NNNQQQNNDWNQWNNQ 449
Score = 39.3 bits (90), Expect = 0.036
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 291 NSQNNPYSNTYNLGWRNHPNFSWREQNNFNQGGN-NQRQYSNQRFQSQNSGPQQNQDQGS 349
N+QNN +N N W N ++ N++NQ N N Q + + +QN+ Q N Q +
Sbjct: 505 NNQNNWNNNQQNNDWNQWNNQGQQQNNDWNQWNNQNNNQNNGWDWNNQNNWNQNNNQQNA 564
Query: 350 GNG 352
NG
Sbjct: 565 WNG 567
Score = 38.9 bits (89), Expect = 0.047
Identities = 25/77 (32%), Positives = 34/77 (43%), Gaps = 14/77 (18%)
Query: 292 SQNNPYSNTYNLGWRNHPNFSWREQNNF-------------NQGGNNQRQYSNQRFQSQN 338
+QNN N +N GW N+ N++ +QNN NQ N Q +N Q N
Sbjct: 466 NQNNNQQNAWN-GWDNNNNWNQWDQNNQWNNQQQNNTWDWNNQNNWNNNQQNNDWNQWNN 524
Query: 339 SGPQQNQDQGSGNGKKS 355
G QQN D N + +
Sbjct: 525 QGQQQNNDWNQWNNQNN 541
Score = 37.4 bits (85), Expect = 0.14
Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 24/104 (23%)
Query: 290 GNSQNNPYSNTYNLGWRNHPNFSWREQNNFNQGGN------------------------N 325
G QNN ++ N + + W QNN+NQ N N
Sbjct: 526 GQQQNNDWNQWNNQNNNQNNGWDWNNQNNWNQNNNQQNAWNGWDNNNNWNQWGGQNNDWN 585
Query: 326 QRQYSNQRFQSQNSGPQQNQDQGSGNGKKSLEELMENFINKADT 369
+Q +N Q N G QQN D + N ++ N +D+
Sbjct: 586 NQQQNNDWNQWNNQGQQQNNDWNNQNNWNQGQQNNNNSAGSSDS 629
Score = 36.2 bits (82), Expect = 0.30
Identities = 38/147 (25%), Positives = 65/147 (43%), Gaps = 15/147 (10%)
Query: 206 INKMAESAVNSTNDRQNRRGVLEI-EAYDRMVASNKQLSQQMTTIQRQFQAAKIS---NV 261
+ + + SA N TN +G +++ + +D A+ +S + + + + + NV
Sbjct: 177 VRQTSGSANNQTN---YMKGTIDVTKHFDAWSAAGLDMSGTLYEVSLNIEGYRSNGSANV 233
Query: 262 DSIHCGTCGGPHASEECGTYFDEEVKVLGNSQ--NNPYSNTYNLGWRNHPNFSWREQNNF 319
S+ T GG +S+ G + + N+Q NN ++N G +N+ W Q
Sbjct: 234 KSVSV-TQGG--SSDNGGQQQNNDWNQQNNNQQQNNDWNNW---GQQNNDWNQWNNQGQQ 287
Query: 320 NQGGNNQRQYSNQRFQSQNSGPQQNQD 346
N NN Q +N Q N G QQN D
Sbjct: 288 NNDWNNWGQQNNDWNQWNNQGQQQNND 314
Score = 36.2 bits (82), Expect = 0.30
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 292 SQNNPYSNTYNLGWRNHPNFS--------WREQNNFNQGGNNQRQYSNQRFQSQNSGPQQ 343
+QNN N ++ W N N++ W + NN N NNQ+Q N + N+ QQ
Sbjct: 397 NQNNQQQNNWD--WNNQNNWNNNQQQNNDWNQWNNQNNWNNNQQQ--NNDWNQWNNQGQQ 452
Query: 344 NQDQGSGNGKKS 355
N D N + +
Sbjct: 453 NNDWNQWNNQNN 464
Score = 35.4 bits (80), Expect = 0.52
Identities = 18/63 (28%), Positives = 33/63 (51%), Gaps = 2/63 (3%)
Query: 293 QNNPYSNTYNLGWRNHPNFSWREQNNFNQGGNNQRQYSNQRFQSQNSGPQQNQDQGSGNG 352
QNN ++ N G +N+ W QNN+NQ N Q ++ + + N+ Q +Q+ N
Sbjct: 439 QNNDWNQWNNQGQQNNDWNQWNNQNNWNQNNNQQNAWNG--WDNNNNWNQWDQNNQWNNQ 496
Query: 353 KKS 355
+++
Sbjct: 497 QQN 499
Score = 34.7 bits (78), Expect = 0.89
Identities = 20/61 (32%), Positives = 29/61 (46%), Gaps = 1/61 (1%)
Query: 291 NSQNNPYSNTYNLGWRNHPNFSWREQNNFNQGGNNQRQYSNQRFQSQNSGPQQNQDQGSG 350
N+ N ++N N N W + NN Q N+ Q++NQ +QN+ QQN G
Sbjct: 421 NNDWNQWNNQNNWNNNQQQNNDWNQWNNQGQQNNDWNQWNNQNNWNQNNN-QQNAWNGWD 479
Query: 351 N 351
N
Sbjct: 480 N 480
Score = 33.9 bits (76), Expect = 1.5
Identities = 23/66 (34%), Positives = 34/66 (50%), Gaps = 5/66 (7%)
Query: 291 NSQNNPYSNTYNLGWRNHPNFSWREQ--NNFNQGGNNQRQYSN--QRFQSQNSGPQQNQD 346
N NN N W N N++ +Q N++NQ NNQ Q +N ++ +QN+ Q N
Sbjct: 413 NWNNNQQQNNDWNQWNNQNNWNNNQQQNNDWNQ-WNNQGQQNNDWNQWNNQNNWNQNNNQ 471
Query: 347 QGSGNG 352
Q + NG
Sbjct: 472 QNAWNG 477
Score = 32.7 bits (73), Expect = 3.4
Identities = 21/68 (30%), Positives = 32/68 (46%), Gaps = 4/68 (5%)
Query: 290 GNSQNNPYSN--TYNLGWRNHPNFSWREQNNFNQGGNNQRQYSNQRFQSQNSGPQQNQDQ 347
G QNN ++N N W N + +QN +N NN NQ Q QN+ NQ+
Sbjct: 356 GQQQNNDWNNWGQQNNDWNQWNNQNNNQQNAWNGWDNNNNW--NQNNQQQNNWDWNNQNN 413
Query: 348 GSGNGKKS 355
+ N +++
Sbjct: 414 WNNNQQQN 421
Score = 32.7 bits (73), Expect = 3.4
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 290 GNSQNNPYSN--TYNLGWRNHPNFSWREQNNFNQGG---NNQRQYSNQRFQSQ---NSGP 341
G QNN ++N N W N ++ N++N G N+ Q++NQ Q N+
Sbjct: 308 GQQQNNDWNNWGQQNNDWNQWNNQGQQQNNDWNNWGQQNNDWNQWNNQGQQQNNDWNNWG 367
Query: 342 QQNQDQGSGNGKKSLEE 358
QQN D N + + ++
Sbjct: 368 QQNNDWNQWNNQNNNQQ 384
Score = 32.3 bits (72), Expect = 4.4
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 294 NNPYSNTYNLGWRNHPNFSWREQNNFNQGGNNQRQYSNQRFQSQNSGPQQNQDQGSG 350
N +NT++ W N N++ +QNN NNQ Q N + N+ QN +Q +G
Sbjct: 495 NQQQNNTWD--WNNQNNWNNNQQNNDWNQWNNQGQQQNNDWNQWNN---QNNNQNNG 546
Score = 32.0 bits (71), Expect = 5.7
Identities = 22/65 (33%), Positives = 28/65 (42%), Gaps = 11/65 (16%)
Query: 293 QNNPYSNTYNLGWRNHP-------NFSWREQNN----FNQGGNNQRQYSNQRFQSQNSGP 341
QNN ++ N G +N+ N W + NN N NN Q +N Q N G
Sbjct: 274 QNNDWNQWNNQGQQNNDWNNWGQQNNDWNQWNNQGQQQNNDWNNWGQQNNDWNQWNNQGQ 333
Query: 342 QQNQD 346
QQN D
Sbjct: 334 QQNND 338
>MYHB_MOUSE (O08638) Myosin heavy chain, smooth muscle isoform (SMMHC)
Length = 1972
Score = 40.8 bits (94), Expect = 0.012
Identities = 82/424 (19%), Positives = 167/424 (39%), Gaps = 47/424 (11%)
Query: 100 LNSQPQGSITTWEDLAKKFTKKLFPRTLLRKLKNDILVFKQEDTENLHEALERFKKLLRK 159
L + +G +E+ A + K + L++ +D++V D +N + + +K +K
Sbjct: 1397 LQKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLVV----DLDNQRQLVSNLEKKQKK 1452
Query: 160 CPQHNLTLGVQVERFYDGLADSARSNLEAAASGEFEALSAQAGWNLINKMAESAVNSTND 219
Q L + + AD A E +ALS + + E A+ + +
Sbjct: 1453 FDQ----LLAEEKNISSKYADERDRAEAEAREKETKALS-------LARALEEALEAKEE 1501
Query: 220 RQNRRGVLEIEAYDRMVASNKQLSQQMTTIQRQFQAAKISNVDSIHCGTCGGPHASEECG 279
+ +L+ E D +V+S + + + +++ +A + EE
Sbjct: 1502 LERTNKMLKAEMED-LVSSKDDVGKNVHELEKSKRALETQ---------------MEEMK 1545
Query: 280 TYFDE---EVKVLGNSQNNPYSNTYNLGWRNHPNFSWREQNNFNQGGNNQRQYSNQRFQS 336
T +E +V+ +++ N L + + R++ N + QRQ +
Sbjct: 1546 TQLEESEDDVQATEDAKLRLEVNMQALKGQFERDLQARDEQNEEKRRQLQRQLHEYETEL 1605
Query: 337 QNSGPQQNQDQGSGNGKKSLEELMENFINKADTSFKNHEAAIKSLETQVGQMAKQMSERP 396
++ ++ Q + KK LE +++ +AD++ K E AIK L QM E
Sbjct: 1606 ED---ERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRELD 1662
Query: 397 PGMFPSDTVI-NPKEN------CSAITLRNIEPLGENKKKQKEKEEEKRKVELENKFTKV 449
D + KEN A ++ E L ++ +K+ + EK EL +
Sbjct: 1663 DARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAERARKQADLEKE--ELAEELASS 1720
Query: 450 LFPPFPTNIAKRRLEKQFSKFISMFKKLRVEL-PFSEVLEKMPQYAKFMKEILSKKRRLS 508
L KRRLE + ++ ++ + + S+ + K A+ + L+ +R +
Sbjct: 1721 LSGRNTLQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQLSNELATERSTA 1780
Query: 509 EENE 512
++NE
Sbjct: 1781 QKNE 1784
>MYHB_RABIT (P35748) Myosin heavy chain, smooth muscle isoform (SMMHC)
Length = 1972
Score = 40.4 bits (93), Expect = 0.016
Identities = 84/418 (20%), Positives = 164/418 (39%), Gaps = 52/418 (12%)
Query: 112 EDLAKKFTKKLFPRTLLRKLKNDILVFKQE------DTENLHEALERFKKLLRKCPQHNL 165
E L +++ +K L K KN + +QE D +N + + +K +K Q
Sbjct: 1402 ESLTQQYEEKAAAYDKLEKTKNRL---QQELDDLVVDLDNQRQLVSNLEKKQKKFDQ--- 1455
Query: 166 TLGVQVERFYDGLADSARSNLEAAASGEFEALSAQAGWNLINKMAESAVNSTNDRQNRRG 225
L + + AD A E +ALS + + E A+ + + +
Sbjct: 1456 -LLAEEKNISSKYADERDRAEAEAREKETKALS-------LARALEEALEAKEELERTNK 1507
Query: 226 VLEIEAYDRMVASNKQLSQQMTTIQRQFQAAKISNVDSIHCGTCGGPHASEECGTYFDE- 284
+L+ E D +V+S + + + +++ +A + EE T +E
Sbjct: 1508 MLKAEMED-LVSSKDDVGKNVHELEKSKRALETQ---------------MEEMKTQLEEL 1551
Query: 285 --EVKVLGNSQNNPYSNTYNLGWRNHPNFSWREQNNFNQGGNNQRQYSNQRFQSQNSGPQ 342
E++ +++ N L + + R++ N + QRQ + ++ +
Sbjct: 1552 EDELQATEDAKLRLEVNMQALKVQFERDLQARDEQNEEKRRQLQRQLHEYETELED---E 1608
Query: 343 QNQDQGSGNGKKSLEELMENFINKADTSFKNHEAAIKSLETQVGQMAKQMSERPPGMFPS 402
+ Q + KK LE +++ +AD++ K E AIK L QM E
Sbjct: 1609 RKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQLLKLQAQMKDFQRELEDARASR 1668
Query: 403 DTVI-NPKEN------CSAITLRNIEPLGENKKKQKEKEEEKRKVELENKFTKVLFPPFP 455
D + KEN A ++ E L ++ +K+ + EK EL + L
Sbjct: 1669 DEIFATAKENEKKAKSLEADLMQLQEDLAAAERARKQADLEKE--ELAEELASSLSGRNA 1726
Query: 456 TNIAKRRLEKQFSKFISMFKKLRVEL-PFSEVLEKMPQYAKFMKEILSKKRRLSEENE 512
KRRLE + ++ ++ + + S+ + K Q A+ + L+ +R +++NE
Sbjct: 1727 LQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATQQAEQLSNELATERSTAQKNE 1784
>RA50_METJA (Q58718) DNA double-strand break repair rad50 ATPase
Length = 1005
Score = 39.7 bits (91), Expect = 0.028
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 27/182 (14%)
Query: 347 QGSGNGKKSLEELMENFINKADTSFK-NHEAAIKSLETQVGQMAKQMSERPPGMFPSDTV 405
Q G K E+ +E + + ++K N+E +K+ +Q+ + K++ E
Sbjct: 166 QKMGEIVKEYEKRLERI--EGELNYKENYEKELKNKMSQLEEKNKKLME----------- 212
Query: 406 INPKENCSAITLRNIEPL---GENKKKQKEK-----EEEKRKVELENKFTKVLFPPFPTN 457
IN K N +IE L ENKK EK EE KR +EL+N+ K+L T
Sbjct: 213 INDKLNKIKKEFEDIEKLFNEWENKKLLYEKFINKLEERKRALELKNQELKILEYDLNTV 272
Query: 458 IAKR----RLEKQFSKFISMFKKLR-VELPFSEVLEKMPQYAKFMKEILSKKRRLSEENE 512
+ R R + ++ K+ S+ ++R +E E+ Y K K++ K + + E
Sbjct: 273 VEARETLNRHKDEYEKYKSLVDEIRKIESRLRELKSHYEDYLKLTKQLEIIKGDIEKLKE 332
Query: 513 II 514
I
Sbjct: 333 FI 334
Score = 32.7 bits (73), Expect = 3.4
Identities = 24/93 (25%), Positives = 45/93 (47%), Gaps = 13/93 (13%)
Query: 426 NKKKQKEKEEEKRKVELENKFTKVLFPPFPTNIAKRRLEKQFSKFISMFKKLRVELPFSE 485
N K+ EKE + + +LE K K++ N +++K+F +E F+E
Sbjct: 187 NYKENYEKELKNKMSQLEEKNKKLM----EINDKLNKIKKEFED---------IEKLFNE 233
Query: 486 VLEKMPQYAKFMKEILSKKRRLSEENEIIELTE 518
K Y KF+ ++ +KR L +N+ +++ E
Sbjct: 234 WENKKLLYEKFINKLEERKRALELKNQELKILE 266
>IF2_AQUAE (O67825) Translation initiation factor IF-2
Length = 805
Score = 39.7 bits (91), Expect = 0.028
Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 26/170 (15%)
Query: 353 KKSLEELMENFINKADTSFKNHEAAIKSLETQVGQMAKQMSERPPGMFPSDTVINPKENC 412
+K EE E I + K E ++ +E + + K+ E+P
Sbjct: 81 EKKEEEKKEEVIVEEVVEEKKPEVIVEEIEEKKEEEEKKEEEKPK--------------- 125
Query: 413 SAITLRNIEPLGENKKKQKEKEEEKRKVELENKFTKVLFPPFPTNIAKRRLEKQFSKFIS 472
+++E L + ++KEKE+EK+KVE E K KV +R+ EK+ K
Sbjct: 126 -----KSVEELIKEILEKKEKEKEKKKVEKERKEEKVRV--VEVKKEERKEEKKEEKKEE 178
Query: 473 MFKKLRVELPFSEVLEKMPQYAKFMKEILSK----KRRLSEENEIIELTE 518
K+++ E++ K+ + K+ K K++ EE +II + E
Sbjct: 179 EKPKIKMSKKEREIMRKLEHAVEKEKKKQEKREKEKKKKEEEVKIIYIPE 228
>RNQ1_YEAST (P25367) [PIN+] prion protein RNQ1 (Rich in asparagine
and glutamine protein 1)
Length = 405
Score = 39.3 bits (90), Expect = 0.036
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 291 NSQNNPYSNTYNLGWRNHPNFSWREQNNFNQGGNNQRQYSNQRFQSQNSGPQQNQDQGSG 350
+S NN SN G+ ++ G N + Y+NQ++Q N G QQ Q Q SG
Sbjct: 216 HSNNNQNSNNSQQGYNQ----------SYQNGNQNSQGYNNQQYQGGNGGYQQQQGQ-SG 264
Query: 351 NGKKSLEELMENFINKADT 369
SL + ++++ T
Sbjct: 265 GAFSSLASMAQSYLGGGQT 283
Score = 33.1 bits (74), Expect = 2.6
Identities = 41/189 (21%), Positives = 62/189 (32%), Gaps = 35/189 (18%)
Query: 200 QAGWNLINKMAESAVNSTNDRQNRR---------GVLEIEAYDRMVASNKQLSQQMT--- 247
Q + + +A S +NS N+ Q + G L A M ++N Q S
Sbjct: 171 QGSFTALASLASSFMNSNNNNQQGQNQSSGGSSFGALASMASSFMHSNNNQNSNNSQQGY 230
Query: 248 --TIQRQFQAAKISNVDSIHCGTCGGPHASEECGTYFDEEVKV----LGNSQNNPYSNTY 301
+ Q Q ++ N G G + G F + LG Q Y
Sbjct: 231 NQSYQNGNQNSQGYNNQQYQGGNGGYQQQQGQSGGAFSSLASMAQSYLGGGQTQSNQQQY 290
Query: 302 NLGWRNHPNFSWREQNNFNQGGNNQRQYSNQRFQSQNSGPQQNQDQGSGNGKKSLEELME 361
N QG NNQ+QY Q Q+ Q Q QG + +L +
Sbjct: 291 N-----------------QQGQNNQQQYQQQGQNYQHQQQGQQQQQGHSSSFSALASMAS 333
Query: 362 NFINKADTS 370
+++ S
Sbjct: 334 SYLGNNSNS 342
>NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa
neurofilament protein) (Neurofilament medium
polypeptide) (NF-M)
Length = 845
Score = 39.3 bits (90), Expect = 0.036
Identities = 52/244 (21%), Positives = 99/244 (40%), Gaps = 38/244 (15%)
Query: 283 DEEVKVLGNSQNNPYSNTYNLGWRNHPNFSWREQNNFNQG--------GNNQRQYSNQRF 334
+EE +V + +P + G + E+ ++G G ++++ S+++
Sbjct: 494 EEEPEVEKSPVKSPEAKEEEEGEKEEEEEGQEEEEEEDEGVKSDQAEEGGSEKEGSSEKD 553
Query: 335 QSQNSGPQQNQDQGSGNGKKSLEELMENFINKADTSFKNHEAAIKSLETQVGQMAKQMSE 394
+ + + + +G G ++ EE T K E AIK E +V + K S
Sbjct: 554 EGEQEEEGETEAEGEGEEAEAKEE--------KKTEGKVEEMAIKE-EIKVEKPEKAKSP 604
Query: 395 RPPGMFPSDTVINPKENCSAITLRNIEPLGENKKKQKEKEEEKRKV--------ELENKF 446
P + PK A G++++K++EK EEK++V ++E K
Sbjct: 605 VPKSPVEE---VKPKPEAKA---------GKDEQKEEEKVEEKKEVAKESPKEEKVEKKE 652
Query: 447 TKVLFPPFPTNIAKRRLEKQFSKFISMFKKLRVELPFSEVLEKMPQYAKFMKEILSKKRR 506
K P EK + I++ K ++V L + E+ PQ + +KE ++
Sbjct: 653 EKPKDVPDKKKAESPVKEKAVEEMITITKSVKVSLE-KDTKEEKPQQQEKVKEKAEEEGG 711
Query: 507 LSEE 510
EE
Sbjct: 712 SEEE 715
>GPR1_YEAST (Q12361) G protein-coupled receptor GPR1
Length = 961
Score = 39.3 bits (90), Expect = 0.036
Identities = 32/170 (18%), Positives = 66/170 (38%), Gaps = 27/170 (15%)
Query: 284 EEVKVLGNSQNNPYSNTYNLGWRNHPNFSWREQNNFNQGGNNQRQYSNQRFQSQNSGPQQ 343
E+ ++ N+ NN + N+ N + + NN N NN +N + N+
Sbjct: 485 EKGGIINNNSNNDDDDN------NNNNDNDNDNNNSNNNNNNNNNNNNNNNNNNNNNNNN 538
Query: 344 NQDQGSGNGKKSLEELMENFINKADTSFKNHEAAIKSLETQVGQMAKQMSERPPGMFPSD 403
N + + N N N D + N I +L + ++Q S+ +
Sbjct: 539 NNNNNNSN----------NIKNNVDNNNTNPADNIPTLSNEAFTPSQQFSQ--------E 580
Query: 404 TVINPKENCSAITLRNIEPLGENKKKQKEKEEEKRKVELENKFTKVLFPP 453
V N + C + N++ ++ + Q K+ +KR+ +++ + P
Sbjct: 581 RVNNNADRCENSSFTNVQ---QHFQAQTYKQMKKRRAQIQKNLRAIFIYP 627
>MOES_MOUSE (P26041) Moesin (Membrane-organizing extension spike
protein)
Length = 576
Score = 38.9 bits (89), Expect = 0.047
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 425 ENKKKQKE---KEEEKRKVELENKFTKVLFPPFPTNIAKRRLEKQFSKFISMFKKLRVEL 481
EN+KK++E KE+EK + E E K+ T A++ LE+Q + + + ++ +
Sbjct: 323 ENEKKKRELAEKEKEKIEREKEELMEKLKQIEEQTKKAQQELEEQTRRALELEQERKRAQ 382
Query: 482 PFSEVLEKMPQYAKFMKEIL---SKKRRLSEENEIIELTEECSAILQRKLPPKRKD 534
+E L K Q A+ KE L S+ ++ ++E E+ E + I Q ++ K+K+
Sbjct: 383 SEAEKLAKERQEAEEAKEALLQASRDQKKTQEQLASEMAELTARISQLEMARKKKE 438
>YB56_METJA (Q58556) Cell division cycle protein 48 homolog MJ1156
Length = 903
Score = 38.5 bits (88), Expect = 0.061
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 429 KQKEKEEEKRKVELENKFTKVLFPPFPTNIAKRRLEKQFSKFISMFKKLRVELPFSEVLE 488
K++E E EL+N K++ P +EK+ KF+ + K ++ + +
Sbjct: 715 KERESAEAGEFSELKNAIGKIISVLSPAKEKIEAVEKEIDKFLEVINKEELKPSEKDEAQ 774
Query: 489 KMPQYAKFMKEILSKKRRLSE-----ENEIIELTEECSA 522
K+ AK++K+IL K + + + EN++ L E+ SA
Sbjct: 775 KL---AKYLKDILGKLKEMIDNIYELENKLNTLKEQVSA 810
>USO1_YEAST (P25386) Intracellular protein transport protein USO1
Length = 1790
Score = 38.5 bits (88), Expect = 0.061
Identities = 60/287 (20%), Positives = 118/287 (40%), Gaps = 33/287 (11%)
Query: 332 QRFQSQNSGPQQNQDQGSGNGKKSLEELMENFINKADTSFKNHEAAIKSLETQVGQMAKQ 391
+ FQ + ++N +Q LE+ E I+K+D+S +E+ I L+ ++ + A
Sbjct: 1011 ENFQIERGSIEKNIEQLKKT-ISDLEQTKEEIISKSDSSKDEYESQISLLKEKL-ETATT 1068
Query: 392 MSERPPGMFPSDTVINPKENCSAITLRNIEPLGENKKKQKEKEEEKRKVELENKFTKVLF 451
++ T + +N++ E K + EK ++ K E+
Sbjct: 1069 ANDENVNKISELTKTREELEAELAAYKNLKNELETKLETSEKALKEVKENEEH------- 1121
Query: 452 PPFPTNIAKRRLEKQFSKFISMFKKLRVELPFSEVLEK-----MPQYAKFMKEILSKKRR 506
K +LEK+ ++ LR L E LEK Q K+ ++I +K+R+
Sbjct: 1122 ----LKEEKIQLEKEATETKQQLNSLRANL---ESLEKEHEDLAAQLKKYEEQIANKERQ 1174
Query: 507 LSEENEIIELTEECSAILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLGSSVNLMPLS 566
+E EI +L +E ++ Q K+K N +V+A+ + + S
Sbjct: 1175 YNE--EISQLNDEITSTQQENESIKKK---------NDELEGEVKAMKSTSEEQSNLKKS 1223
Query: 567 MFERLNVGELKPTMMMLQLADRSIVAPWGVVEDVLVRVGEFEFPVDF 613
+ LN+ ++K + + S++ VE V++ E + +F
Sbjct: 1224 EIDALNL-QIKELKKKNETNEASLLESIKSVESETVKIKELQDECNF 1269
Score = 33.5 bits (75), Expect = 2.0
Identities = 91/455 (20%), Positives = 182/455 (40%), Gaps = 69/455 (15%)
Query: 112 EDLAKKFTKKLFPRTLLRKLK-----NDILVFKQEDTEN--------LHEALERFKKLLR 158
++L K T+KL ++L K N+ L+ E+++N L ++ +
Sbjct: 954 DNLVAKLTEKL--KSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQNKIDSMSQEKE 1011
Query: 159 KCPQHNLTLGVQVERFYDGLADSARSNLEAAASGEFEALSAQAGWNLINKMAESAVNSTN 218
++ +E+ ++D ++ E + + ++ +L+ + E+A + +
Sbjct: 1012 NFQIERGSIEKNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQISLLKEKLETATTAND 1071
Query: 219 DRQNRRGVLEI--EAYDRMVASNKQLSQQMTT-IQRQFQAAKISNVDSIHCGTCGGPHAS 275
+ N+ L E + +A+ K L ++ T ++ +A K + H
Sbjct: 1072 ENVNKISELTKTREELEAELAAYKNLKNELETKLETSEKALKEVKENEEHL--------- 1122
Query: 276 EECGTYFDEEVKVLGNSQNNPYSNTYNLGWRNHPNFSWREQNNFNQGGNNQRQYSNQ--- 332
+E ++E N+ +N +L + H + + + + Q N +RQY+ +
Sbjct: 1123 KEEKIQLEKEATETKQQLNSLRANLESLE-KEHEDLAAQLKKYEEQIANKERQYNEEISQ 1181
Query: 333 ------RFQSQNSGPQQNQDQGSGNGK--KSLEELMENF-----------INKADTSFKN 373
Q +N ++ D+ G K KS E N I + +
Sbjct: 1182 LNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKNET 1241
Query: 374 HEAA----IKSLETQVGQMAKQMSERPPGMFPSDTVINPKENCSAITLRNIEPLGENKKK 429
+EA+ IKS+E++ ++ + E F V ++ A +N +K
Sbjct: 1242 NEASLLESIKSVESETVKIKELQDECN---FKEKEVSELEDKLKASEDKN------SKYL 1292
Query: 430 QKEKEEEKRKVELENKFTKVLFP-PFPTNIAKRRLEKQFSKFISMFKKLRVE--LPFSEV 486
+ +KE EK K EL+ K T++ TN++K + EK S+ +S KK E E
Sbjct: 1293 ELQKESEKIKEELDAKTTELKIQLEKITNLSKAK-EKSESE-LSRLKKTSSEERKNAEEQ 1350
Query: 487 LEKMPQYAKFMKEILSKKRRLSEENEIIELTEECS 521
LEK+ + + K+R+L E +T+E S
Sbjct: 1351 LEKLKNEIQIKNQAFEKERKLLNEGS-STITQEYS 1384
>SM1A_RAT (Q9Z1M9) Structural maintenance of chromosome 1-like 1
protein (SMC-protein)
Length = 1233
Score = 38.5 bits (88), Expect = 0.061
Identities = 52/209 (24%), Positives = 87/209 (40%), Gaps = 44/209 (21%)
Query: 353 KKSLEELMENF---INKADTSFKNHEAAIKSLETQVGQMAKQMSERPPGMFPSDTVINPK 409
K LE + NF IN ++ E +K L+ ++ Q+ ++ E
Sbjct: 734 KSKLESELANFGPRINDIKRIIQSREREMKDLKEKMNQVEDEVFE--------------- 778
Query: 410 ENCSAITLRNIEPLGENKKKQKEKEEEKRKVELENKFTKV-LFPPFPTNIAK------RR 462
E C I +RNI E K K ++ E K+++E EN+ T++ + F N K
Sbjct: 779 EFCREIGVRNIREFEEEKVK-RQNEIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHM 837
Query: 463 LEKQFSKFISMFKKLRVE--LPFSEVLEKMPQYAKFMKEILSKKRRLSEEN--------- 511
E+ K + +KL+ E + E M Q + L+KK ++++N
Sbjct: 838 WEQTVKKDENEIEKLKKEEQRHMKIIDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKK 897
Query: 512 ------EIIELTEECSAILQRKLPPKRKD 534
E+ L +E +AI + KL KR D
Sbjct: 898 LGGANKEMTHLQKEVTAI-ETKLEQKRSD 925
>SM1A_HUMAN (Q14683) Structural maintenance of chromosome 1-like 1
protein (SMC1alpha protein) (SB1.8/DXS423E protein)
(Sb1.8)
Length = 1233
Score = 38.5 bits (88), Expect = 0.061
Identities = 52/209 (24%), Positives = 87/209 (40%), Gaps = 44/209 (21%)
Query: 353 KKSLEELMENF---INKADTSFKNHEAAIKSLETQVGQMAKQMSERPPGMFPSDTVINPK 409
K LE + NF IN ++ E +K L+ ++ Q+ ++ E
Sbjct: 734 KSKLESELANFGPRINDIKRIIQSREREMKDLKEKMNQVEDEVFE--------------- 778
Query: 410 ENCSAITLRNIEPLGENKKKQKEKEEEKRKVELENKFTKV-LFPPFPTNIAK------RR 462
E C I +RNI E K K ++ E K+++E EN+ T++ + F N K
Sbjct: 779 EFCREIGVRNIREFEEEKVK-RQNEIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHM 837
Query: 463 LEKQFSKFISMFKKLRVE--LPFSEVLEKMPQYAKFMKEILSKKRRLSEEN--------- 511
E+ K + +KL+ E + E M Q + L+KK ++++N
Sbjct: 838 WEQTVKKDENEIEKLKKEEQRHMKIIDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKK 897
Query: 512 ------EIIELTEECSAILQRKLPPKRKD 534
E+ L +E +AI + KL KR D
Sbjct: 898 LGGANKEMTHLQKEVTAI-ETKLEQKRSD 925
>SM1A_BOVIN (O97593) Structural maintenance of chromosome 1-like 1
protein (SMC-protein)
Length = 1233
Score = 38.5 bits (88), Expect = 0.061
Identities = 52/209 (24%), Positives = 87/209 (40%), Gaps = 44/209 (21%)
Query: 353 KKSLEELMENF---INKADTSFKNHEAAIKSLETQVGQMAKQMSERPPGMFPSDTVINPK 409
K LE + NF IN ++ E +K L+ ++ Q+ ++ E
Sbjct: 734 KSKLESELANFGPRINDIKRIIQSREREMKDLKEKMNQVEDEVFE--------------- 778
Query: 410 ENCSAITLRNIEPLGENKKKQKEKEEEKRKVELENKFTKV-LFPPFPTNIAK------RR 462
E C I +RNI E K K ++ E K+++E EN+ T++ + F N K
Sbjct: 779 EFCREIGVRNIREFEEEKVK-RQNEIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHM 837
Query: 463 LEKQFSKFISMFKKLRVE--LPFSEVLEKMPQYAKFMKEILSKKRRLSEEN--------- 511
E+ K + +KL+ E + E M Q + L+KK ++++N
Sbjct: 838 WEQTVKKDENEIEKLKKEEQRHMKIIDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKK 897
Query: 512 ------EIIELTEECSAILQRKLPPKRKD 534
E+ L +E +AI + KL KR D
Sbjct: 898 LGGANKEMTHLQKEVTAI-ETKLEQKRSD 925
>MYHB_RAT (Q63862) Myosin heavy chain, smooth muscle isoform (SMMHC)
(Fragments)
Length = 1327
Score = 38.5 bits (88), Expect = 0.061
Identities = 82/424 (19%), Positives = 166/424 (38%), Gaps = 47/424 (11%)
Query: 100 LNSQPQGSITTWEDLAKKFTKKLFPRTLLRKLKNDILVFKQEDTENLHEALERFKKLLRK 159
L + +G +E+ A + K + L++ +D++V D +N + + +K +K
Sbjct: 752 LQKEMEGLGQQYEEKAAAYDKLEKTKNRLQQELDDLVV----DLDNQRQLVSNLEKKQKK 807
Query: 160 CPQHNLTLGVQVERFYDGLADSARSNLEAAASGEFEALSAQAGWNLINKMAESAVNSTND 219
Q L + + AD A E +ALS + + E A+ + +
Sbjct: 808 FDQ----LLAEEKNISSKYADERDRAEAEAREKETKALS-------LARALEEALEAKEE 856
Query: 220 RQNRRGVLEIEAYDRMVASNKQLSQQMTTIQRQFQAAKISNVDSIHCGTCGGPHASEECG 279
+ +L+ E D +V+S + + + +++ +A + EE
Sbjct: 857 LERTNKMLKAEMED-LVSSKDDVGKNVHELEKSKRALETQ---------------MEEMR 900
Query: 280 TYFDE---EVKVLGNSQNNPYSNTYNLGWRNHPNFSWREQNNFNQGGNNQRQYSNQRFQS 336
T +E E++ +++ N L + + R++ N + QRQ +
Sbjct: 901 TQLEELEDELQATEDAKLRLEVNMQALKGQFERDLQARDEQNEEKRRQLQRQLHEYETEL 960
Query: 337 QNSGPQQNQDQGSGNGKKSLEELMENFINKADTSFKNHEAAIKSLETQVGQMAKQMSERP 396
++ ++ Q + KK LE +++ +AD++ K E AIK L QM E
Sbjct: 961 ED---ERKQRALAAAAKKKLEGDLKDLELQADSAVKGREEAIKQLRKLQAQMKDFQRELD 1017
Query: 397 PGMFPSDTVI-NPKEN------CSAITLRNIEPLGENKKKQKEKEEEKRKVELENKFTKV 449
D + KEN A ++ E L ++ +K+ + EK EL +
Sbjct: 1018 DARASRDEIFATSKENEKKAKSLEAELMQLQEDLAAAERARKQADLEKE--ELAEELASS 1075
Query: 450 LFPPFPTNIAKRRLEKQFSKFISMFKKLRVEL-PFSEVLEKMPQYAKFMKEILSKKRRLS 508
L KRRLE + ++ ++ + + S+ + K A+ + L +R +
Sbjct: 1076 LSGRNTLQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATLQAEQLSNELVTERSAA 1135
Query: 509 EENE 512
++NE
Sbjct: 1136 QKNE 1139
>MOES_RAT (O35763) Moesin (Membrane-organizing extension spike
protein)
Length = 576
Score = 38.5 bits (88), Expect = 0.061
Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 425 ENKKKQKE---KEEEKRKVELENKFTKVLFPPFPTNIAKRRLEKQFSKFISMFKKLRVEL 481
EN+KK++E KE+EK + E E K+ T A++ LE+Q + + + ++ +
Sbjct: 323 ENEKKKRELAEKEKEKIEREKEELMEKLKQIEEQTKKAQQELEEQTRRALELEQERKRAQ 382
Query: 482 PFSEVLEKMPQYAKFMKEIL---SKKRRLSEENEIIELTEECSAILQRKLPPKRKD 534
+E L K Q A+ KE L S+ ++ ++E E+ E + + Q ++ K+K+
Sbjct: 383 SEAEKLAKERQEAEEAKEALLQASRDQKKTQEQLASEMAELTARVSQLEMARKKKE 438
>SMC1_XENLA (O93308) Structural maintenance of chromosome 1 protein
Length = 1232
Score = 38.1 bits (87), Expect = 0.080
Identities = 50/209 (23%), Positives = 89/209 (41%), Gaps = 44/209 (21%)
Query: 353 KKSLEELMENF---INKADTSFKNHEAAIKSLETQVGQMAKQMSERPPGMFPSDTVINPK 409
K LE + NF IN ++ + +K L+ ++ Q+ ++ E
Sbjct: 734 KSKLESELANFSPRINDIKRIIQSRDREMKDLKEKMNQVEDEVFE--------------- 778
Query: 410 ENCSAITLRNIEPLGENKKKQKEKEEEKRKVELENKFTKV-LFPPFPTNIAK------RR 462
E C I +RNI E K K ++ E K+++E EN+ T++ + + N K +
Sbjct: 779 EFCREIGVRNIREFEEEKVK-RQNEIAKKRLEFENQKTRLGIQLDYEKNQLKEDQGKVQT 837
Query: 463 LEKQFSKFISMFKKLRVE--LPFSEVLEKMPQYAKFMKEILSKKRRLSEENEIIE----- 515
E+ K + +KL+ E + E M Q + L+KK ++++N ++E
Sbjct: 838 WEQSVKKDDNEIEKLKKEEQRHMKIIDETMAQLQDLKNQHLAKKSEVNDKNHLMEDIRKK 897
Query: 516 ----------LTEECSAILQRKLPPKRKD 534
L +E +AI + KL KR D
Sbjct: 898 LGSANKEVTHLQKEVTAI-ETKLEQKRSD 925
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.135 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,340,596
Number of Sequences: 164201
Number of extensions: 3366170
Number of successful extensions: 15064
Number of sequences better than 10.0: 181
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 164
Number of HSP's that attempted gapping in prelim test: 14081
Number of HSP's gapped (non-prelim): 572
length of query: 705
length of database: 59,974,054
effective HSP length: 117
effective length of query: 588
effective length of database: 40,762,537
effective search space: 23968371756
effective search space used: 23968371756
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)
Lotus: description of TM0103.9