BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0103.7
         (411 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NONA_DROME (Q04047) No-on-transient A protein                          37  0.070
GR2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)                  36  0.16
FBRL_CAEEL (Q22053) Fibrillarin                                        35  0.46
ROU_HUMAN (Q00839) Heterogenous nuclear ribonucleoprotein U (hnR...    34  0.60
GRP2_NICSY (P27484) Glycine-rich protein 2                             34  0.60
CC39_CAEEL (Q09455) Cuticle collagen 39 precursor                      33  1.0
CA35_HUMAN (P25940) Collagen alpha 3(V) chain precursor                33  1.0
GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-...    33  1.3
TXA1_ACTEQ (Q9NJQ2) Neurotoxin Ae I precursor (Toxin Ae I) (AeNa)      33  1.7
CC19_CAEEL (P18835) Cuticle collagen 19 precursor                      32  2.3
NSP1_YEAST (P14907) Nucleoporin NSP1 (Nuclear pore protein NSP1)...    32  3.9
CA13_MOUSE (P08121) Collagen alpha 1(III) chain precursor              32  3.9
SSB_COREF (Q8FLP9) Single-strand binding protein (SSB) (Helix-de...    31  5.0
CSP_PLAFW (P08307) Circumsporozoite protein precursor (CS)             31  5.0
CA25_HUMAN (P05997) Collagen alpha 2(V) chain precursor                31  5.0
C43B_MOUSE (Q9EQG9) Goodpasture antigen-binding protein (EC 2.7....    31  5.0
GAG_JSRV (P31622) Gag polyprotein [Contains: Core protein p10; C...    31  6.6
CA21_RANCA (O42350) Collagen alpha 2(I) chain precursor                31  6.6
CA13_CHICK (P12105) Collagen alpha 1(III) chain precursor (Fragm...    31  6.6
U269_DEIRA (Q9RXP1) Protein DR0269                                     30  8.6

>NONA_DROME (Q04047) No-on-transient A protein
          Length = 700

 Score = 37.4 bits (85), Expect = 0.070
 Identities = 39/145 (26%), Positives = 55/145 (37%), Gaps = 26/145 (17%)

Query: 222 KGLGVNKAPKKKE-------EKRKPYF*PQDQGRNQF-GRTWNPTGGFGFQGRPG----- 268
           K LG + A K+ +       EK++ +  P  Q +NQ   +    TGG G  G P      
Sbjct: 28  KNLGKHNAQKQNDSADGGPAEKKQRFGGPNAQNQNQNQNQNGGVTGGGGAVGGPNQNKNF 87

Query: 269 GFNNTPFCGRCRRNGHRAQECIVVLGGQSGV------QTGGSGNPN-------PTTTVGG 315
           G N   F G   RN +RA        G +        +T  +  PN       P T   G
Sbjct: 88  GNNKGGFVGNRNRNNNRAGNQNRTFPGNNNSNQKPNNETSKADGPNALAKNNEPATAAAG 147

Query: 316 GSNRNANVPPRDNRRVGHPANKGKV 340
            +  N N     N+R G   N+ +V
Sbjct: 148 QNQANQNANKGQNQRQGQNQNQNQV 172


>GR2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)
          Length = 201

 Score = 36.2 bits (82), Expect = 0.16
 Identities = 24/58 (41%), Positives = 28/58 (47%), Gaps = 4/58 (6%)

Query: 259 GGFGFQGRPGGFNNTPFCGRCRRNGHRAQECIVVLGGQSGVQTGGSGNPNPTTTVGGG 316
           GG G  GR GG  +   C +C   GH A+EC    GG SG   GG G    +   GGG
Sbjct: 122 GGRGSGGRGGGGGDNS-CFKCGEPGHMARECSQGGGGYSG---GGGGGRYGSGGGGGG 175


>FBRL_CAEEL (Q22053) Fibrillarin
          Length = 352

 Score = 34.7 bits (78), Expect = 0.46
 Identities = 21/52 (40%), Positives = 26/52 (49%), Gaps = 4/52 (7%)

Query: 248 RNQFGRTWNPTGGFGFQGRPGGFNNTPFCGRCRRNGHRAQECIVV----LGG 295
           R  FG   +P GGFG +G P G   +P  GR    G R  + +VV    LGG
Sbjct: 75  RGGFGGRGSPRGGFGGRGSPRGGRGSPRGGRGGAGGMRGGKTVVVEPHRLGG 126


>ROU_HUMAN (Q00839) Heterogenous nuclear ribonucleoprotein U (hnRNP
           U) (Scaffold attachment factor A) (SAF-A) (pp120)
          Length = 824

 Score = 34.3 bits (77), Expect = 0.60
 Identities = 35/128 (27%), Positives = 48/128 (37%), Gaps = 7/128 (5%)

Query: 211 EENEKT*KEYLKGLGVNKAPKKKEEKRKPYF*PQDQGRNQFGRTWNPTGGFGFQGRPGGF 270
           EE +K  ++Y +       P+KK+            G+NQF R     G  G   R G F
Sbjct: 659 EEAQKLLEQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQFNRGGGHRGRGGLNMRGGNF 718

Query: 271 NNTPFCGRCRRNGHRAQECIVVLGGQSGVQTGGSGNPNPTTTVGGGSNRNANVPPRDNRR 330
                     R G+  +  +   GG  G  +GG G P P   V  G    +N   R N  
Sbjct: 719 RGG---APGNRGGYNRRGNMPQRGGGGG-GSGGIGYPYPRAPVFPGRGSYSN---RGNYN 771

Query: 331 VGHPANKG 338
            G   N+G
Sbjct: 772 RGGMPNRG 779


>GRP2_NICSY (P27484) Glycine-rich protein 2
          Length = 214

 Score = 34.3 bits (77), Expect = 0.60
 Identities = 18/47 (38%), Positives = 24/47 (50%), Gaps = 4/47 (8%)

Query: 259 GGFGFQGRPGGFNNTPFCGRCRRNGHRAQECIVVLGGQSGVQTGGSG 305
           GG+G  G  GG      C +C  +GH A++C    GG  G + GG G
Sbjct: 146 GGYGGGGSGGGSG----CFKCGESGHFARDCSQSGGGGGGGRFGGGG 188


>CC39_CAEEL (Q09455) Cuticle collagen 39 precursor
          Length = 323

 Score = 33.5 bits (75), Expect = 1.0
 Identities = 31/93 (33%), Positives = 34/93 (36%), Gaps = 13/93 (13%)

Query: 259 GGFGFQGRPGGFNNTPFCGRCRRNGHRAQECIVVLGGQSGVQTGGSGNPNPTTTVG---- 314
           G  G  G+PGG  N    G      H  QECI    G  G   G  G P P    G    
Sbjct: 102 GDRGLDGQPGGAGNPGQPGVAGPKSHEQQECIKCPAGSPG-PAGAPGAPGPQGPNGQPGH 160

Query: 315 ---GGSNRNANV--PPRD---NRRVGHPANKGK 339
              GGS   A    P  D     +VG P N G+
Sbjct: 161 PGQGGSQGPAGPRGPAGDAGAPGQVGAPGNPGQ 193


>CA35_HUMAN (P25940) Collagen alpha 3(V) chain precursor
          Length = 1745

 Score = 33.5 bits (75), Expect = 1.0
 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 257 PTGGFGFQGRPGGFNNTPFCGRCRRNGHRAQECIVVLGGQSGVQTGGSGNPNPTTTVGGG 316
           P G  G  GRPG        G     G R  + +  L G+ G Q G  G+       G  
Sbjct: 522 PPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKG-QRGDFGHVGQPGPPGED 580

Query: 317 SNRNANVPPRDNRRVGHPANKGKVFAMTMEEASESPELIKGMCYVNGFP 365
             R A  PP    + G P  +G    +     S  P    G+  ++G P
Sbjct: 581 GERGAEGPPGPTGQAGEPGPRG----LLGPRGSPGPTGRPGVTGIDGAP 625


>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-)
           (Germline helicase-2)
          Length = 974

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 34/107 (31%), Positives = 42/107 (38%), Gaps = 19/107 (17%)

Query: 235 EKRKPYF*PQDQGRNQF--GRTWNPTGGFGFQGRPGGFNNTPF-----CGRCRRNGHRAQ 287
           E+RKP      +GRN F  G      GGFG  G   GF N        C  C+  GHR+ 
Sbjct: 413 EERKPR-----EGRNGFTSGFGGGNDGGFG-GGNAEGFGNNEERGPMKCFNCKGEGHRSA 466

Query: 288 ECI-----VVLGGQSGVQTGGSGNP-NPTTTVGGGSNRNANVPPRDN 328
           EC          G+ G ++    NP  P     G   +   VP  DN
Sbjct: 467 ECPEPPRGCFNCGEQGHRSNECPNPAKPREGAEGEGPKATYVPVEDN 513


>TXA1_ACTEQ (Q9NJQ2) Neurotoxin Ae I precursor (Toxin Ae I) (AeNa)
          Length = 82

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 243 PQDQGRNQFGRTWNPTGGFGFQGRPGGFNNTPFCGRCR 280
           P  +G    G  W  TGG+G  G P G++   FCG+ R
Sbjct: 39  PSTRGNKLSGTIWMKTGGYGGNGCPKGWH---FCGKSR 73


>CC19_CAEEL (P18835) Cuticle collagen 19 precursor
          Length = 289

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 33/106 (31%), Positives = 39/106 (36%), Gaps = 14/106 (13%)

Query: 257 PTGGFGFQGRPGGFNNTPFCGRCRRNGHRAQECIVVLGGQSG--------VQTGGSGNPN 308
           P GG G QG  G        GR    G R +       GQ G         +TG +GNP 
Sbjct: 175 PVGGPGEQGPQGDAGRPGAAGRPGPAGPRGEPGTEYKPGQPGRPGPQGPRGETGPAGNPG 234

Query: 309 -PTTTVGGGSNRNANVPPRDNRRVGHPANKGKVFAMTMEEASESPE 353
            P      G N NA  P       GHP   G V     E+A+  P+
Sbjct: 235 APGNDGEAGKNGNAGRPGPP----GHPGKNG-VPGQKGEDAAPGPD 275


>NSP1_YEAST (P14907) Nucleoporin NSP1 (Nuclear pore protein NSP1)
           (Nucleoskeletal-like protein) (p110)
          Length = 823

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 20/64 (31%), Positives = 25/64 (38%), Gaps = 5/64 (7%)

Query: 259 GGFGFQGRPGGFNNTPFCGRCRRNGHRAQECIVVLGGQSGVQTGGSGNPNPTTTVGGGSN 318
           G FG      GFNN+        N + A   I    G +       GN NPT+ V G +N
Sbjct: 34  GAFGTGQSTFGFNNS-----APNNTNNANSSITPAFGSNNTGNTAFGNSNPTSNVFGSNN 88

Query: 319 RNAN 322
              N
Sbjct: 89  STTN 92


>CA13_MOUSE (P08121) Collagen alpha 1(III) chain precursor
          Length = 1464

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 30/100 (30%), Positives = 37/100 (37%), Gaps = 17/100 (17%)

Query: 257 PTGGFGFQGRPGGFNNTPFCGRCRRNGHRAQECIVVLGGQSGV--QTGGSGNPNPTTTVG 314
           P G  G  G PG   N    G   +NG R       L G +G   +TG  G P PT   G
Sbjct: 570 PRGQPGVMGFPGPKGND---GAPGKNGERGGPGGPGLPGPAGKNGETGPQGPPGPTGPAG 626

Query: 315 GGSNRN------------ANVPPRDNRRVGHPANKGKVFA 342
              +                 PP +N + G P  KG+V A
Sbjct: 627 DKGDSGPPGPQGLQGIPGTGGPPGENGKPGEPGPKGEVGA 666


>SSB_COREF (Q8FLP9) Single-strand binding protein (SSB)
           (Helix-destabilizing protein)
          Length = 232

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 31/101 (30%), Positives = 32/101 (30%), Gaps = 28/101 (27%)

Query: 246 QGRNQFGRTWNPTGGFGF--------QGRPGGFNNTPFCGRCRRNGHRAQECIVVLGGQS 297
           QG NQ G      GGFG         QG  GGF                       GG  
Sbjct: 141 QGGNQGGNPGGGQGGFGQNTGGFGGQQGNQGGFGGGQ-------------------GGNP 181

Query: 298 GVQTGGSGNPNPTTTVGGGSNRNANVPPRDNRRVGHPANKG 338
           G   G SGN       GGG N+ A  P  D      PA  G
Sbjct: 182 GGNQGQSGNNFNQGGFGGGGNQ-AAAPDNDPWNSAPPAGSG 221


>CSP_PLAFW (P08307) Circumsporozoite protein precursor (CS)
          Length = 442

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 24/92 (26%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 245 DQGRNQFGRTWNPTGGFGFQGRPGGFNNTPFCGRCRRNGHRAQECIVVLGGQSGVQTGGS 304
           D G N  G   N     G  GR G   +       +R+G+      +       ++  G 
Sbjct: 76  DDGDNDNGNNNNGNNNNGDNGREGKDED-------KRDGNNEDNEKLRKPKHKKLKQPGD 128

Query: 305 GNPNPTTTVGGGSNRNANVPPRDNRRVGHPAN 336
           GNP+P        N N NV P  N      AN
Sbjct: 129 GNPDPNANPNVDPNANPNVDPNANPNANPNAN 160


>CA25_HUMAN (P05997) Collagen alpha 2(V) chain precursor
          Length = 1496

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 33/114 (28%), Positives = 37/114 (31%), Gaps = 8/114 (7%)

Query: 233  KEEKRKPYF*PQDQGRNQFGRTWNPTGGFGFQGRPGGFNNTPFCGRCRRNGHRAQECIVV 292
            KE    P   P   GR        P GG G +G PG        G     G   Q  IV 
Sbjct: 934  KEGPPGPRGDPGSHGRVGVRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVG 993

Query: 293  LGGQSGVQ--------TGGSGNPNPTTTVGGGSNRNANVPPRDNRRVGHPANKG 338
            + GQ G +         G  G   PT   G         PP  N  VG P  +G
Sbjct: 994  MPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEG 1047


>C43B_MOUSE (Q9EQG9) Goodpasture antigen-binding protein (EC
           2.7.1.37) (GPBP) (Collagen type IV alpha 3 binding
           protein) (StAR-related lipid transfer protein 11)
           (StARD11) (START domain-containing protein 11)
          Length = 624

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 29/132 (21%), Positives = 55/132 (40%), Gaps = 11/132 (8%)

Query: 37  EEIYHGLDKFLKRSPPKFEGGYNPDGAYEWVRELERIFETLVCAEPRKVAFASYLLSSEA 96
           EE Y  + + LK+ P +F G    +G    + E E  F+ +  A  R+        S + 
Sbjct: 288 EEAYKNVMEELKKKP-RFGGPDYEEGPNSLINE-EEFFDAVEAALDRQDKIEEQSQSEKV 345

Query: 97  RTWWTSVRGRITPEEGELIWEIFKNSFLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAK 156
           R  W +     +   G+    +  + F++K +   +     M   +L   +  V  ++++
Sbjct: 346 RLHWPT-----SLPSGDTFSSVGTHRFVQKPYSRSSS----MSSIDLVSASDDVHRFSSQ 396

Query: 157 FEELCQFHPRYS 168
            EE+ Q H  YS
Sbjct: 397 VEEMVQNHMNYS 408


>GAG_JSRV (P31622) Gag polyprotein [Contains: Core protein p10; Core
           protein p18; Core protein p12; Core protein p27; Core
           protein p14; Core protein p4]
          Length = 612

 Score = 30.8 bits (68), Expect = 6.6
 Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 25/119 (21%)

Query: 220 YLKGLGVNKAPKKKEEKRKPYF*PQDQGRNQFGRTWNPTGGFGFQGRPG----------- 268
           Y++G+ +  A + K  K   +   Q Q RN+ G   +   G    G+PG           
Sbjct: 471 YMQGIAMAAALQGKSIKEVLF---QQQARNKKGLQKSGNSGCFVCGQPGHRAAVCPQKHQ 527

Query: 269 -GFNNTPFCGRCRRNGHRAQECIVVLGGQSGVQTGGSGNPNPTTTVGGGSNRNANVPPR 326
              N    C RC++  H A++C          +T   GNP P   V G   R   + P+
Sbjct: 528 TSVNTPNLCPRCKKGKHWARDC--------RSKTDVQGNPLP--PVSGNWVRGQPLAPK 576


>CA21_RANCA (O42350) Collagen alpha 2(I) chain precursor
          Length = 1355

 Score = 30.8 bits (68), Expect = 6.6
 Identities = 26/84 (30%), Positives = 31/84 (35%), Gaps = 4/84 (4%)

Query: 257  PTGGFGFQGRPGGFNNTPFCGRCRRNGHRAQECIVVLGGQSGVQTGGSGNPNPTTTVGGG 316
            P G  G +G  G        G   R GH     +    G  G +TG SG+  P   VG  
Sbjct: 989  PAGPQGVRGDKGEAGERGARGLDGRKGHNGLSGLPGPSGTPG-ETGPSGSVGP---VGPR 1044

Query: 317  SNRNANVPPRDNRRVGHPANKGKV 340
                 + PP    R GHP   G V
Sbjct: 1045 GPSGPSGPPGKEGRSGHPGAMGPV 1068


>CA13_CHICK (P12105) Collagen alpha 1(III) chain precursor
           (Fragments)
          Length = 1262

 Score = 30.8 bits (68), Expect = 6.6
 Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 14/87 (16%)

Query: 257 PTGGFGFQGRPG-----GFNNTPFCGRCRRNGHRAQECIVVLGGQSGVQTGGSGNPNPTT 311
           P GG G  G PG     G   TP  G   +NG +         G  G + G +G P    
Sbjct: 408 PPGGRGLPGPPGTSGNPGAKGTP--GEPGKNGAKGDP------GPKG-ERGENGTPGARG 458

Query: 312 TVGGGSNRNANVPPRDNRRVGHPANKG 338
             G    R AN  P  N   G P  +G
Sbjct: 459 PPGEEGKRGANGEPGQNGVPGTPGERG 485


>U269_DEIRA (Q9RXP1) Protein DR0269
          Length = 322

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 26/88 (29%), Positives = 32/88 (35%), Gaps = 5/88 (5%)

Query: 244 QDQGRNQFGRT-WNPTGGFGFQGRPGGFNNTPFCGRCRRNGHRAQECIVVLGGQSGVQTG 302
           +D+G   FG       GGF  +   GGF      G  R    R +      GG  G   G
Sbjct: 173 EDRGERSFGGDRGGDRGGFRPREDRGGFGGDRDRGGFRPREDRGERSF---GGDRGGDRG 229

Query: 303 GSGNPNPTTTVGG-GSNRNANVPPRDNR 329
           G G   P    GG G        PR++R
Sbjct: 230 GQGGFRPREDRGGFGDRDRGGFRPREDR 257


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.320    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,367,785
Number of Sequences: 164201
Number of extensions: 2567290
Number of successful extensions: 6222
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 6142
Number of HSP's gapped (non-prelim): 98
length of query: 411
length of database: 59,974,054
effective HSP length: 113
effective length of query: 298
effective length of database: 41,419,341
effective search space: 12342963618
effective search space used: 12342963618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)