BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0103.5
(275 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CNBP_RAT (P62634) Cellular nucleic acid binding protein (CNBP) (... 54 4e-07
CNBP_HUMAN (P62633) Cellular nucleic acid binding protein (CNBP)... 54 4e-07
GIS2_YEAST (P53849) Zinc-finger protein GIS2 53 9e-07
CNBP_CHICK (O42395) Cellular nucleic acid binding protein (CNBP) 53 9e-07
CNBP_MOUSE (P53996) Cellular nucleic acid binding protein (CNBP)... 52 2e-06
GAG_HV1B5 (P04593) Gag polyprotein [Contains: Core protein p17 (... 52 2e-06
GAG_HV1LW (Q70622) Gag polyprotein [Contains: Core protein p17 (... 51 3e-06
GAG_HV1BR (P03348) Gag polyprotein [Contains: Core protein p17 (... 51 3e-06
GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; ... 51 3e-06
GAG_HV1MN (P05888) Gag polyprotein [Contains: Core protein p17 (... 51 3e-06
GAG_HV1Y2 (P35962) Gag polyprotein [Contains: Core protein p17 (... 50 5e-06
GAG_HV1J3 (P12494) Gag polyprotein [Contains: Core protein p17 (... 50 5e-06
GAG_HV1A2 (P03349) Gag polyprotein [Contains: Core protein p17 (... 50 5e-06
GAG_HV1H2 (P04591) Gag polyprotein [Contains: Core protein p17 (... 50 6e-06
GAG_FIVT2 (P31821) Gag polyprotein [Contains: Core protein p15; ... 50 6e-06
GAG_EIAVY (P03351) Gag polyprotein [Contains: Core protein p15; ... 50 6e-06
GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix prote... 50 6e-06
GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix prote... 50 6e-06
GAG_HV1OY (P20889) Gag polyprotein [Contains: Core protein p17 (... 49 1e-05
GAG_HV1MA (P04594) Gag polyprotein [Contains: Core protein p17 (... 49 1e-05
>CNBP_RAT (P62634) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 177
Score = 53.9 bits (128), Expect = 4e-07
Identities = 37/107 (34%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 171 HHQRLMATAMYQQRGMNRTGAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKTKES 230
H R T + RGM G GG G F S C++C GHLA +C +E
Sbjct: 14 HWARECPTGGGRGRGMRSRGRGGFTSDRG-FQFVSSSLPDICYRCGESGHLAKDCDLQED 72
Query: 231 LCFNCNQPGHFSQDCMALRGESSG---NVGKGKQLAPEERIHAKEGK 274
C+NC + GH ++DC + E N GK LA + HA E K
Sbjct: 73 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA-RDCDHADEQK 118
Score = 52.0 bits (123), Expect = 2e-06
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 197 KFGHFANKCSVTGWRCFKCNREGHLAVNC-KTKESLCFNCNQPGHFSQDC 245
+FGH C T +C++C GH+A+NC KT E C+ C + GH +++C
Sbjct: 124 EFGHIQKDC--TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171
Score = 45.1 bits (105), Expect = 2e-04
Identities = 23/84 (27%), Positives = 33/84 (38%), Gaps = 25/84 (29%)
Query: 199 GHFANKCSVTGWRCFKCNREGHLAVNCKT----KESLCFNCNQPGH-------------- 240
GH A C + C+ C R GH+A +CK +E C+NC +PGH
Sbjct: 61 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 120
Query: 241 -------FSQDCMALRGESSGNVG 257
+DC ++ G G
Sbjct: 121 SCGEFGHIQKDCTKVKCYRCGETG 144
Score = 38.1 bits (87), Expect = 0.023
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 197 KFGHFANKCS-VTGWRCFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDCMALRGESSGN 255
K GH A C +C+ C GH+ +C + C+ C + GH + +C +
Sbjct: 103 KPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK--CYRCGETGHVAINCSKTSEVNCYR 160
Query: 256 VGKGKQLAPEERIHA 270
G+ LA E I A
Sbjct: 161 CGESGHLARECTIEA 175
>CNBP_HUMAN (P62633) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 177
Score = 53.9 bits (128), Expect = 4e-07
Identities = 37/107 (34%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 171 HHQRLMATAMYQQRGMNRTGAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKTKES 230
H R T + RGM G GG G F S C++C GHLA +C +E
Sbjct: 14 HWARECPTGGGRGRGMRSRGRGGFTSDRG-FQFVSSSLPDICYRCGESGHLAKDCDLQED 72
Query: 231 LCFNCNQPGHFSQDCMALRGESSG---NVGKGKQLAPEERIHAKEGK 274
C+NC + GH ++DC + E N GK LA + HA E K
Sbjct: 73 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA-RDCDHADEQK 118
Score = 52.0 bits (123), Expect = 2e-06
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 197 KFGHFANKCSVTGWRCFKCNREGHLAVNC-KTKESLCFNCNQPGHFSQDC 245
+FGH C T +C++C GH+A+NC KT E C+ C + GH +++C
Sbjct: 124 EFGHIQKDC--TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171
Score = 45.1 bits (105), Expect = 2e-04
Identities = 23/84 (27%), Positives = 33/84 (38%), Gaps = 25/84 (29%)
Query: 199 GHFANKCSVTGWRCFKCNREGHLAVNCKT----KESLCFNCNQPGH-------------- 240
GH A C + C+ C R GH+A +CK +E C+NC +PGH
Sbjct: 61 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 120
Query: 241 -------FSQDCMALRGESSGNVG 257
+DC ++ G G
Sbjct: 121 SCGEFGHIQKDCTKVKCYRCGETG 144
Score = 38.1 bits (87), Expect = 0.023
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 197 KFGHFANKCS-VTGWRCFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDCMALRGESSGN 255
K GH A C +C+ C GH+ +C + C+ C + GH + +C +
Sbjct: 103 KPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK--CYRCGETGHVAINCSKTSEVNCYR 160
Query: 256 VGKGKQLAPEERIHA 270
G+ LA E I A
Sbjct: 161 CGESGHLARECTIEA 175
>GIS2_YEAST (P53849) Zinc-finger protein GIS2
Length = 153
Score = 52.8 bits (125), Expect = 9e-07
Identities = 22/58 (37%), Positives = 35/58 (59%), Gaps = 9/58 (15%)
Query: 192 GGPMRKFGHFANKC----SVTGWRCFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDC 245
GGP H A C ++G +C+ C + GH++ +C+ + LC+NCN+ GH S+DC
Sbjct: 98 GGP----NHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQN-DRLCYNCNETGHISKDC 150
Score = 47.8 bits (112), Expect = 3e-05
Identities = 18/34 (52%), Positives = 24/34 (69%), Gaps = 1/34 (2%)
Query: 212 CFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDC 245
C+ C + GHLA +C + E LC+NCN+PGH DC
Sbjct: 6 CYVCGKIGHLAEDCDS-ERLCYNCNKPGHVQTDC 38
Score = 46.2 bits (108), Expect = 9e-05
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 197 KFGHFANKCSVTGWRCFKCNREGHLAVNCKTKESL----CFNCNQPGHFSQDCMALRGES 252
K GH A C + C+ CN+ GH+ +C ++ C+NC + GH +C R +
Sbjct: 11 KIGHLAEDCD-SERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQRCFN 69
Query: 253 SGNVGKGKQLAPEER 267
G + PE +
Sbjct: 70 CNQTGHISRECPEPK 84
Score = 46.2 bits (108), Expect = 9e-05
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 199 GHFANKCSVTGWRCFKCNREGHLAVNCKTKESL-------CFNCNQPGHFSQDCMALRGE 251
GH ++C+V RCF CN+ GH++ C + C+ C P H ++DCM G
Sbjct: 56 GHVRSECTVQ--RCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGI 113
Query: 252 S 252
S
Sbjct: 114 S 114
>CNBP_CHICK (O42395) Cellular nucleic acid binding protein (CNBP)
Length = 172
Score = 52.8 bits (125), Expect = 9e-07
Identities = 29/93 (31%), Positives = 42/93 (44%), Gaps = 18/93 (19%)
Query: 171 HHQRLMATAMYQQRGMNRTGAGG-------------PMRKFGHFANKCSVTGWR-CFKCN 216
H R T + + RGM G G + GH A C + + C+ C
Sbjct: 14 HWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQEDKACYNCG 73
Query: 217 REGHLAVNCKT----KESLCFNCNQPGHFSQDC 245
R GH+A +CK +E C+NC +PGH ++DC
Sbjct: 74 RGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106
Score = 52.0 bits (123), Expect = 2e-06
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 197 KFGHFANKCSVTGWRCFKCNREGHLAVNC-KTKESLCFNCNQPGHFSQDC 245
+FGH C T +C++C GH+A+NC KT E C+ C + GH +++C
Sbjct: 119 EFGHIQKDC--TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166
Score = 42.7 bits (99), Expect = 0.001
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 199 GHFANKCSVTGWR----CFKCNREGHLAVNCK-TKESLCFNCNQPGHFSQDCMALRGESS 253
GH A C C+ C + GHLA +C E C++C + GH +DC ++
Sbjct: 76 GHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRC 135
Query: 254 GNVG 257
G G
Sbjct: 136 GETG 139
Score = 40.4 bits (93), Expect = 0.005
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 22/76 (28%)
Query: 212 CFKCNREGHLAVNCKTK----------------------ESLCFNCNQPGHFSQDCMALR 249
CFKC R GH A C T +C+ C + GH ++DC
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQE 65
Query: 250 GESSGNVGKGKQLAPE 265
++ N G+G +A +
Sbjct: 66 DKACYNCGRGGHIAKD 81
Score = 38.1 bits (87), Expect = 0.023
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 197 KFGHFANKCS-VTGWRCFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDCMALRGESSGN 255
K GH A C +C+ C GH+ +C + C+ C + GH + +C +
Sbjct: 98 KPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK--CYRCGETGHVAINCSKTSEVNCYR 155
Query: 256 VGKGKQLAPEERIHA 270
G+ LA E I A
Sbjct: 156 CGESGHLARECTIEA 170
>CNBP_MOUSE (P53996) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 178
Score = 52.0 bits (123), Expect = 2e-06
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 197 KFGHFANKCSVTGWRCFKCNREGHLAVNC-KTKESLCFNCNQPGHFSQDC 245
+FGH C T +C++C GH+A+NC KT E C+ C + GH +++C
Sbjct: 125 EFGHIQKDC--TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 172
Score = 51.6 bits (122), Expect = 2e-06
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 199 GHFANKCSVT-GWRCFKCNREGHLAVNCKT----KESLCFNCNQPGHFSQDC 245
GH A C + C+ C R GH+A +CK +E C+NC +PGH ++DC
Sbjct: 61 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
Score = 42.7 bits (99), Expect = 0.001
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 199 GHFANKCSVTGWR----CFKCNREGHLAVNCK-TKESLCFNCNQPGHFSQDCMALRGESS 253
GH A C C+ C + GHLA +C E C++C + GH +DC ++
Sbjct: 82 GHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRC 141
Query: 254 GNVG 257
G G
Sbjct: 142 GETG 145
Score = 40.0 bits (92), Expect = 0.006
Identities = 21/82 (25%), Positives = 30/82 (35%), Gaps = 28/82 (34%)
Query: 212 CFKCNREGHLAVNCKTK----------------------------ESLCFNCNQPGHFSQ 243
CFKC R GH A C T +C+ C + GH ++
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 244 DCMALRGESSGNVGKGKQLAPE 265
DC E+ N G+G +A +
Sbjct: 66 DCDLQEDEACYNCGRGGHIAKD 87
Score = 38.1 bits (87), Expect = 0.023
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 197 KFGHFANKCS-VTGWRCFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDCMALRGESSGN 255
K GH A C +C+ C GH+ +C + C+ C + GH + +C +
Sbjct: 104 KPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK--CYRCGETGHVAINCSKTSEVNCYR 161
Query: 256 VGKGKQLAPEERIHA 270
G+ LA E I A
Sbjct: 162 CGESGHLARECTIEA 176
>GAG_HV1B5 (P04593) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 511
Score = 51.6 bits (122), Expect = 2e-06
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 171 HHQRLMATAMYQQRGMNRTGAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKT-KE 229
H R++A AM Q T + M + G+F N+ + +CF C +EGH+A NCK ++
Sbjct: 357 HKARVLAEAMSQV-----TNSTTIMMQRGNFRNQRKIV--KCFNCGKEGHIARNCKAPRK 409
Query: 230 SLCFNCNQPGHFSQDCMALRGESSGNV 256
C+ C + GH +DC + G +
Sbjct: 410 KGCWKCGKEGHQMKDCTERQANFLGKI 436
Score = 30.4 bits (67), Expect = 4.9
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 232 CFNCNQPGHFSQDCMALRGESSGNVGK 258
CFNC + GH +++C A R + GK
Sbjct: 391 CFNCGKEGHIARNCKAPRKKGCWKCGK 417
>GAG_HV1LW (Q70622) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 499
Score = 51.2 bits (121), Expect = 3e-06
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 171 HHQRLMATAMYQQRGMNRTGAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKT-KE 229
H R++A AM Q T + M + G+F N+ + +CF C +EGH+A NC+ ++
Sbjct: 357 HKARVLAEAMSQV-----TNSATIMMQRGNFRNQRKIV--KCFNCGKEGHIARNCRAPRK 409
Query: 230 SLCFNCNQPGHFSQDCMALRGESSGNV 256
C+ C + GH +DC + G +
Sbjct: 410 KGCWKCGKEGHQMKDCTERQANFLGKI 436
Score = 30.4 bits (67), Expect = 4.9
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 232 CFNCNQPGHFSQDCMALRGESSGNVGK 258
CFNC + GH +++C A R + GK
Sbjct: 391 CFNCGKEGHIARNCRAPRKKGCWKCGK 417
>GAG_HV1BR (P03348) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 511
Score = 51.2 bits (121), Expect = 3e-06
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 171 HHQRLMATAMYQQRGMNRTGAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKT-KE 229
H R++A AM Q T + M + G+F N+ + +CF C +EGH+A NC+ ++
Sbjct: 357 HKARVLAEAMSQV-----TNSATIMMQRGNFRNQRKIV--KCFNCGKEGHIARNCRAPRK 409
Query: 230 SLCFNCNQPGHFSQDCMALRGESSGNV 256
C+ C + GH +DC + G +
Sbjct: 410 KGCWKCGKEGHQMKDCTERQANFLGKI 436
Score = 30.4 bits (67), Expect = 4.9
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 232 CFNCNQPGHFSQDCMALRGESSGNVGK 258
CFNC + GH +++C A R + GK
Sbjct: 391 CFNCGKEGHIARNCRAPRKKGCWKCGK 417
>GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18;
Core protein p25; Core protein p16]
Length = 508
Score = 50.8 bits (120), Expect = 3e-06
Identities = 34/97 (35%), Positives = 43/97 (44%), Gaps = 23/97 (23%)
Query: 171 HHQRLMATAMYQQRGMNRT------GAG-GPMRKFGHFANKCSVTGWRCFKCNREGHLAV 223
H R++A AM + R G G GP RK +CF C +EGHLA
Sbjct: 366 HKARVLAEAMSMVQNQGRADVFFQKGQGAGPKRKI------------KCFNCGKEGHLAR 413
Query: 224 NCKT-KESLCFNCNQPGHFSQDCMALRGESSGNVGKG 259
NCK + C+ C Q GH +DC G +GKG
Sbjct: 414 NCKAPRRKGCWRCGQEGHQMKDC---TGRQVNFLGKG 447
>GAG_HV1MN (P05888) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 506
Score = 50.8 bits (120), Expect = 3e-06
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 171 HHQRLMATAMYQQRGMNRTGAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKT-KE 229
H R++A AM Q T + M + G+F N+ + +CF C +EGH+A NC+ ++
Sbjct: 360 HKARVLAEAMSQV-----TNSATIMMQRGNFRNQRKII--KCFNCGKEGHIAKNCRAPRK 412
Query: 230 SLCFNCNQPGHFSQDCMALRGESSGNV 256
C+ C + GH +DC + G +
Sbjct: 413 RGCWKCGKEGHQMKDCTERQANFLGKI 439
Score = 30.0 bits (66), Expect = 6.4
Identities = 11/27 (40%), Positives = 15/27 (54%)
Query: 232 CFNCNQPGHFSQDCMALRGESSGNVGK 258
CFNC + GH +++C A R GK
Sbjct: 394 CFNCGKEGHIAKNCRAPRKRGCWKCGK 420
>GAG_HV1Y2 (P35962) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 499
Score = 50.4 bits (119), Expect = 5e-06
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 171 HHQRLMATAMYQQRGMNRTGAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKT-KE 229
H R++A AM Q T + M + G+F N+ +CF C +EGH+A NC+ ++
Sbjct: 357 HKARVLAEAMSQV-----TNSATIMMQRGNFRNQRKTV--KCFNCGKEGHIAKNCRAPRK 409
Query: 230 SLCFNCNQPGHFSQDCMALRGESSGNV 256
C+ C + GH +DC + G +
Sbjct: 410 KGCWKCGKEGHQMKDCTERQANFLGKI 436
Score = 32.7 bits (73), Expect = 0.98
Identities = 21/69 (30%), Positives = 29/69 (41%), Gaps = 2/69 (2%)
Query: 190 GAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDCMALR 249
G GGP K A S + G+ KT + CFNC + GH +++C A R
Sbjct: 351 GVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKTVK--CFNCGKEGHIAKNCRAPR 408
Query: 250 GESSGNVGK 258
+ GK
Sbjct: 409 KKGCWKCGK 417
>GAG_HV1J3 (P12494) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 499
Score = 50.4 bits (119), Expect = 5e-06
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 171 HHQRLMATAMYQQRGMNRTGAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKT-KE 229
H R++A AM Q T + M + G+F N+ + +CF C +EGHLA NC+ ++
Sbjct: 357 HKARVLAEAMSQV-----TNSTTIMMQRGNFRNQRKII--KCFNCGKEGHLARNCRAPRK 409
Query: 230 SLCFNCNQPGHFSQDCMALRGESSGNV 256
C+ C + GH +DC + G +
Sbjct: 410 KGCWKCGKEGHQMKDCNERQANFLGKI 436
Score = 30.4 bits (67), Expect = 4.9
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 232 CFNCNQPGHFSQDCMALRGESSGNVGK 258
CFNC + GH +++C A R + GK
Sbjct: 391 CFNCGKEGHLARNCRAPRKKGCWKCGK 417
>GAG_HV1A2 (P03349) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 501
Score = 50.4 bits (119), Expect = 5e-06
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 171 HHQRLMATAMYQQRGMNRTGAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKT-KE 229
H R++A AM Q T M + G+F N+ +CF C +EGH+A NC+ ++
Sbjct: 359 HKARVLAEAMSQV-----TNPANIMMQRGNFRNQRKTV--KCFNCGKEGHIAKNCRAPRK 411
Query: 230 SLCFNCNQPGHFSQDCMALRGESSGNV 256
C+ C + GH +DC + G +
Sbjct: 412 KGCWRCGREGHQMKDCTERQANFLGKI 438
Score = 30.8 bits (68), Expect = 3.7
Identities = 20/69 (28%), Positives = 29/69 (41%), Gaps = 2/69 (2%)
Query: 190 GAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDCMALR 249
G GGP K A S + G+ KT + CFNC + GH +++C A R
Sbjct: 353 GVGGPGHKARVLAEAMSQVTNPANIMMQRGNFRNQRKTVK--CFNCGKEGHIAKNCRAPR 410
Query: 250 GESSGNVGK 258
+ G+
Sbjct: 411 KKGCWRCGR 419
>GAG_HV1H2 (P04591) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 499
Score = 50.1 bits (118), Expect = 6e-06
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 171 HHQRLMATAMYQQRGMNRTGAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKT-KE 229
H R++A AM Q T + M + G+F N+ + +CF C +EGH A NC+ ++
Sbjct: 357 HKARVLAEAMSQV-----TNSATIMMQRGNFRNQRKIV--KCFNCGKEGHTARNCRAPRK 409
Query: 230 SLCFNCNQPGHFSQDCMALRGESSGNV 256
C+ C + GH +DC + G +
Sbjct: 410 KGCWKCGKEGHQMKDCTERQANFLGKI 436
Score = 29.6 bits (65), Expect = 8.3
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 232 CFNCNQPGHFSQDCMALRGESSGNVGK 258
CFNC + GH +++C A R + GK
Sbjct: 391 CFNCGKEGHTARNCRAPRKKGCWKCGK 417
>GAG_FIVT2 (P31821) Gag polyprotein [Contains: Core protein p15;
Major core protein p24; Nucleic acid binding protein
p10]
Length = 449
Score = 50.1 bits (118), Expect = 6e-06
Identities = 22/57 (38%), Positives = 32/57 (55%), Gaps = 1/57 (1%)
Query: 212 CFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDCMALRGESSGNVGKGKQLAPEERI 268
CF C + GHLA CK + C NC +PGH + +C ++SGN G+ AP ++
Sbjct: 377 CFNCKKPGHLARQCKEAKR-CNNCGKPGHLAANCWQGGRKTSGNEKVGRAAAPVNQV 432
Score = 32.7 bits (73), Expect = 0.98
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 196 RKFGHFANKCSVTGWRCFKCNREGHLAVNC 225
+K GH A +C RC C + GHLA NC
Sbjct: 381 KKPGHLARQCKEAK-RCNNCGKPGHLAANC 409
Score = 32.3 bits (72), Expect = 1.3
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 223 VNCKTKESLCFNCNQPGHFSQDCMALRGESSGNVGKGKQLA 263
V K +CFNC +PGH ++ C + N GK LA
Sbjct: 368 VQTKGPRLVCFNCKKPGHLARQCK--EAKRCNNCGKPGHLA 406
>GAG_EIAVY (P03351) Gag polyprotein [Contains: Core protein p15;
Major core protein p26 (Capsid protein p26); Core
protein p11; Core protein p9]
Length = 486
Score = 50.1 bits (118), Expect = 6e-06
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 188 RTGAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDCMA 247
+TG GP K G C+ C + GHL+ C+ + +CF C QPGHFS+ C +
Sbjct: 360 QTGLAGPF-KGGALKGGPLKAAQTCYNCGKPGHLSSQCRAPK-VCFKCKQPGHFSKQCRS 417
Query: 248 LRGESSGNVGKGKQLAPEERIHAKEGKS 275
+ N +G Q P+++ + KS
Sbjct: 418 V----PKNGKQGAQGRPQKQTFPIQQKS 441
>GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix protein
p17; Capsid protein p26; Nucleocapsid protein p14]
Length = 476
Score = 50.1 bits (118), Expect = 6e-06
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 209 GWRCFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDCMALRGESSGNVGKGKQLAPEERI 268
G RC+ C + GHL NCK ++ C++C +PGH +++C + G+ S + G++ P+
Sbjct: 402 GRRCYGCGKTGHLKRNCKQQK--CYHCGKPGHQARNCRSKNGKCS-SAPYGQRSQPQNNF 458
Query: 269 H 269
H
Sbjct: 459 H 459
>GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix protein
p17; Capsid protein p26; Nucleocapsid protein p14]
Length = 476
Score = 50.1 bits (118), Expect = 6e-06
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 209 GWRCFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDCMALRGESSGNVGKGKQLAPEERI 268
G RC+ C + GHL NCK ++ C++C +PGH +++C + G+ S + G++ P+
Sbjct: 402 GRRCYGCGKTGHLKRNCKQQK--CYHCGKPGHQARNCRSKNGKCS-SAPYGQRSQPQNNF 458
Query: 269 H 269
H
Sbjct: 459 H 459
>GAG_HV1OY (P20889) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 498
Score = 49.3 bits (116), Expect = 1e-05
Identities = 26/87 (29%), Positives = 43/87 (48%), Gaps = 9/87 (10%)
Query: 171 HHQRLMATAMYQQRGMNRTGAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKT-KE 229
H R++A AM Q + M + G+F N+ +CF C +EGH+A NC+ ++
Sbjct: 357 HKARVLAEAMSQVNSVT------VMMQKGNFKNQRKTV--KCFNCGKEGHIAKNCRAPRK 408
Query: 230 SLCFNCNQPGHFSQDCMALRGESSGNV 256
C+ C + GH +DC + G +
Sbjct: 409 KGCWKCGREGHQMKDCTERQANFLGKI 435
Score = 29.6 bits (65), Expect = 8.3
Identities = 20/69 (28%), Positives = 30/69 (42%), Gaps = 3/69 (4%)
Query: 190 GAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDCMALR 249
G GGP K A S ++G+ KT + CFNC + GH +++C A R
Sbjct: 351 GVGGPGHKARVLAEAMSQVN-SVTVMMQKGNFKNQRKTVK--CFNCGKEGHIAKNCRAPR 407
Query: 250 GESSGNVGK 258
+ G+
Sbjct: 408 KKGCWKCGR 416
>GAG_HV1MA (P04594) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 504
Score = 49.3 bits (116), Expect = 1e-05
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 171 HHQRLMATAMYQQRGMNRTGAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKT-KE 229
H R++A AM Q N T A M + G+F + + +CF C +EGHLA NC+ ++
Sbjct: 363 HKARVLAEAMSQ--ATNSTAA--IMMQRGNFKGQKRI---KCFNCGKEGHLARNCRAPRK 415
Query: 230 SLCFNCNQPGHFSQDCMALRGESSGNV 256
C+ C + GH +DC + G +
Sbjct: 416 KGCWKCGKEGHQMKDCTERQANFLGKI 442
Score = 31.2 bits (69), Expect = 2.9
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 190 GAGGPMRKFGHFANKCS-VTGWRCFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDCMAL 248
G GGP K A S T + G+ + K CFNC + GH +++C A
Sbjct: 357 GVGGPSHKARVLAEAMSQATNSTAAIMMQRGNFKGQKRIK---CFNCGKEGHLARNCRAP 413
Query: 249 RGESSGNVGK 258
R + GK
Sbjct: 414 RKKGCWKCGK 423
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,706,930
Number of Sequences: 164201
Number of extensions: 1231194
Number of successful extensions: 3521
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 3166
Number of HSP's gapped (non-prelim): 280
length of query: 275
length of database: 59,974,054
effective HSP length: 109
effective length of query: 166
effective length of database: 42,076,145
effective search space: 6984640070
effective search space used: 6984640070
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0103.5