BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0103.4
(378 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YC89_METJA (Q58685) Hypothetical protein MJ1289 40 0.007
CBSA_SULSO (P58029) Cytochrome b558/566 subunit A 37 0.063
UME6_YEAST (P39001) Transcriptional regulator UME6 (Negative tra... 37 0.082
SDC_DROME (P49415) Syndecan precursor 37 0.11
YA87_MYCPN (P75606) Hypothetical protein MPN087 (R02_orf150) 36 0.18
Z341_HUMAN (Q9BYN7) Zinc finger protein 341 35 0.41
Y220_HUMAN (Q92617) Hypothetical protein KIAA0220 (Fragment) 35 0.41
YNK6_YEAST (P50942) Hypothetical 133.3 kDa protein in CYB5-LEU4 ... 34 0.53
KIC1_YEAST (P38692) Serine/threonine-protein kinase KIC1 (EC 2.7... 34 0.53
IF2_SYNEL (Q8DK04) Translation initiation factor IF-2 33 1.2
CCAE_RABIT (Q02343) Voltage-dependent R-type calcium channel alp... 33 1.2
VP61_NPVOP (O10270) 61 kDa protein homolog 33 1.6
SYJ2_MOUSE (Q9D2G5) Synaptojanin 2 (EC 3.1.3.36) (Synaptic inosi... 33 1.6
LB13_ARATH (Q9AT61) LOB domain protein 13 33 1.6
TAU_PAPHA (Q9MYX8) Microtubule-associated protein tau (Neurofibr... 32 2.0
TAU_BOVIN (P29172) Microtubule-associated protein tau (Neurofibr... 32 2.7
COQ4_DROME (Q9VVG6) Ubiquinone biosynthesis protein COQ4 homolog 32 2.7
CHMO_ATRHO (Q9LKN0) Choline monooxygenase, chloroplast precursor... 32 2.7
ABF1_HUMAN (Q15911) Alpha-fetoprotein enhancer binding protein (... 32 2.7
YM38_YEAST (Q03825) Hypothetical 85.0 kDa protein in HLJ1-SMP2 i... 32 3.5
>YC89_METJA (Q58685) Hypothetical protein MJ1289
Length = 165
Score = 40.4 bits (93), Expect = 0.007
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 25 NRHIPSGTVYLYTFGYSIYLRVQY-IYIPSGTVYTFGYSISIYL-RVQYIPSGTVYLYTF 82
N I +GT Y+ +F + + Y +Y+ GT+Y F Y+IS V YI + +Y F
Sbjct: 77 NVKISNGTKYV-SFNITTIEGIDYDVYLEKGTLYIFIYNISAQCPNVYYIKYTNLSIYEF 135
Query: 83 GYNIYL----RVQYFYIPSGTVYTF 103
G NI + +++FY+ + VY +
Sbjct: 136 GGNITINYSDNLRHFYVNNSKVYVY 160
Score = 36.6 bits (83), Expect = 0.11
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 72 IPSGTVYLYTFGYNIYLRVQY-FYIPSGTVYTFGYSISIYL-RVQYIPSGTVYLYTFGYS 129
I +GT Y+ +F + Y Y+ GT+Y F Y+IS V YI + +Y FG +
Sbjct: 80 ISNGTKYV-SFNITTIEGIDYDVYLEKGTLYIFIYNISAQCPNVYYIKYTNLSIYEFGGN 138
Query: 130 ISI----YLRVQYIPSGTVYLYT 148
I+I LR Y+ + VY+Y+
Sbjct: 139 ITINYSDNLRHFYVNNSKVYVYS 161
>CBSA_SULSO (P58029) Cytochrome b558/566 subunit A
Length = 479
Score = 37.4 bits (85), Expect = 0.063
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 271 PHPALASPSLASSTLADPRSGPSVTQSILPTVPAMENCKIAMHRNPPKSQVNYTT----- 325
P PA + S A++ L P SGP + + I+ T + K+ NY +
Sbjct: 112 PEPAFGAWSAAAAALYPPASGPGLFRQIMLTPGTTYTIE--------KNYTNYFSIVNGN 163
Query: 326 ILQGNLLVNQSNHLLPATNN 345
I+QG L++N S LLPA N+
Sbjct: 164 IIQGRLVLNYSGILLPAPND 183
>UME6_YEAST (P39001) Transcriptional regulator UME6 (Negative
transcriptional regulator of IME2)
Length = 836
Score = 37.0 bits (84), Expect = 0.082
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 11/152 (7%)
Query: 225 VRPPISQHNKKVSRLGSNPMNKLDSPPKTDSIITPNTRLKIHVPPRPHPALASP-SLASS 283
++P + N+ V S N S T +I+ + KIH+PP PA++SP + A+
Sbjct: 181 IQPQYTATNEDVFPYSSTSTN---SNTATTTIVA-GAKKKIHLPPPQAPAVSSPGTTAAG 236
Query: 284 TLADPRSG-PSVTQSILPTVPAMENCKIAMHRNPPKSQV--NYTTILQGNLLVNQSNHLL 340
+ A SG S T S LP + N N P S + N +T N + S+
Sbjct: 237 SGAGTGSGIRSRTGSDLPLIITSANKNNGKTTNSPMSILSRNNSTNNNDNNSIQSSDSRE 296
Query: 341 PATNNYSQHYL---LKPGKLPTAQAQIKQTRH 369
+ NN YL K G P+ +Q++ H
Sbjct: 297 SSNNNEIGGYLRGGTKRGGSPSNDSQVQHNVH 328
>SDC_DROME (P49415) Syndecan precursor
Length = 399
Score = 36.6 bits (83), Expect = 0.11
Identities = 20/78 (25%), Positives = 39/78 (49%), Gaps = 3/78 (3%)
Query: 230 SQHNKKVSRLGSNPMNKLDSPPKTDSII---TPNTRLKIHVPPRPHPALASPSLASSTLA 286
S HN ++S+ ++ +N +P +T S I + +T + P PA + + A+ +
Sbjct: 98 SSHNTRISQSSNSGINTAHTPTQTSSTIPTTSTSTPMPTTTPTATTPASTTTAAATQISS 157
Query: 287 DPRSGPSVTQSILPTVPA 304
S + T ++ PT+PA
Sbjct: 158 FANSSSTTTTTLAPTIPA 175
>YA87_MYCPN (P75606) Hypothetical protein MPN087 (R02_orf150)
Length = 150
Score = 35.8 bits (81), Expect = 0.18
Identities = 35/113 (30%), Positives = 53/113 (45%), Gaps = 12/113 (10%)
Query: 49 IYIPS--GTVYTFGYSISIYLRVQY----IPSGTVYLYTFGYNIYLRVQYFYIPSGTVYT 102
IY+P+ + +F YS SIY Y + S Y FG+ I L + F IP+ T+ T
Sbjct: 4 IYVPTTLNLIDSFNYSESIYKWGDYFFRHLESRDFYFSNFGF-ISLFLLLFVIPTITLTT 62
Query: 103 FGYSISIYLRVQYIPSGTVYLYTFGYSISIYLRVQYIPSGTVYLYTFGYSIYL 155
G + YLR I + +Y+ ++ I++ V G V FGY + L
Sbjct: 63 LGCFLFSYLRFTDINKIKIQIYSL-LTVFIFIDV----FGLVVSVLFGYLLPL 110
>Z341_HUMAN (Q9BYN7) Zinc finger protein 341
Length = 773
Score = 34.7 bits (78), Expect = 0.41
Identities = 21/62 (33%), Positives = 36/62 (57%), Gaps = 5/62 (8%)
Query: 273 PALASPSLASSTLADPRSGPSVTQSILPTVPAMENCKIAMHRNPPKSQVNYTTILQGNLL 332
PALA+ SLA++++ P + P+ Q P N +I+ + P S + T++QGN+L
Sbjct: 70 PALATVSLATNSIYPPSAAPTAVQQ----APTPANRQISTYITVPPSPL-IQTLVQGNIL 124
Query: 333 VN 334
V+
Sbjct: 125 VS 126
>Y220_HUMAN (Q92617) Hypothetical protein KIAA0220 (Fragment)
Length = 884
Score = 34.7 bits (78), Expect = 0.41
Identities = 28/95 (29%), Positives = 40/95 (41%), Gaps = 3/95 (3%)
Query: 224 GVRPPISQHNKKV-SRLGSNPMNKLDSPPKTDSIITPNTRLKIHVPPRPHPALASPSLAS 282
G PP + N K S P+ P D+I TP RL+ +PP L +PS
Sbjct: 331 GPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQ 390
Query: 283 STLADPRSGPSVTQSILPTVPAMENCKIAMHRNPP 317
T P + PS +I PA ++ + R+ P
Sbjct: 391 LTPLPPSAPPSADDNI--KTPAFHPQRMIISRHLP 423
Score = 33.1 bits (74), Expect = 1.2
Identities = 24/76 (31%), Positives = 32/76 (41%), Gaps = 1/76 (1%)
Query: 224 GVRPPISQHNKKV-SRLGSNPMNKLDSPPKTDSIITPNTRLKIHVPPRPHPALASPSLAS 282
G PP + N K S P+ P D+I TP RL+ +PP L +PS
Sbjct: 665 GPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQ 724
Query: 283 STLADPRSGPSVTQSI 298
T P + PS +I
Sbjct: 725 LTPLPPSAPPSADDNI 740
Score = 33.1 bits (74), Expect = 1.2
Identities = 24/76 (31%), Positives = 32/76 (41%), Gaps = 1/76 (1%)
Query: 224 GVRPPISQHNKKV-SRLGSNPMNKLDSPPKTDSIITPNTRLKIHVPPRPHPALASPSLAS 282
G PP + N K S P+ P D+I TP RL+ +PP L +PS
Sbjct: 623 GPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQ 682
Query: 283 STLADPRSGPSVTQSI 298
T P + PS +I
Sbjct: 683 LTPLPPSAPPSADDNI 698
Score = 33.1 bits (74), Expect = 1.2
Identities = 24/76 (31%), Positives = 32/76 (41%), Gaps = 1/76 (1%)
Query: 224 GVRPPISQHNKKV-SRLGSNPMNKLDSPPKTDSIITPNTRLKIHVPPRPHPALASPSLAS 282
G PP + N K S P+ P D+I TP RL+ +PP L +PS
Sbjct: 289 GPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQ 348
Query: 283 STLADPRSGPSVTQSI 298
T P + PS +I
Sbjct: 349 LTPLPPSAPPSADDNI 364
Score = 32.7 bits (73), Expect = 1.6
Identities = 45/160 (28%), Positives = 61/160 (38%), Gaps = 23/160 (14%)
Query: 227 PPISQHNKKV-SRLGSNPMNKLDSPPKTDSIITPNTRLKIHVPPRPHPALASPSLASSTL 285
PP + N K S P+ P D+I TP RL+ +PP L +PS T
Sbjct: 208 PPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTP 267
Query: 286 ADPRSGPSVTQSIL--------PTVP-AMENCKIAMHRN--------PPKSQVNYTT--- 325
P + PS +I P P A +N K R PP + N T
Sbjct: 268 LPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAE 327
Query: 326 ILQGNLLVNQSNHLLPATNNYSQHYLLKPGKLPTAQAQIK 365
L+G L + ++L T + Q L P P+A IK
Sbjct: 328 RLRGPLPPSADDNL--KTPSERQLTPLPPSAPPSADDNIK 365
>YNK6_YEAST (P50942) Hypothetical 133.3 kDa protein in CYB5-LEU4
intergenic region
Length = 1183
Score = 34.3 bits (77), Expect = 0.53
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 20/99 (20%)
Query: 227 PPISQHNKKVSRLGSNPMNKLDSPPKTDSIITPNTR--------LKIHVPPRPHPALASP 278
PP S+HNK+ P +KL SP K SI++ + R L+ H P+P P + P
Sbjct: 990 PPTSRHNKE-------PSSKLLSPTKEISIVSVSPRKGESNLPALERHSTPKPLPPV--P 1040
Query: 279 SLASSTLADPRSGPSVTQSILPTVPAMENCKIAMHRNPP 317
+L+ S + S Q T+ +N KI PP
Sbjct: 1041 ALSLSKPVSLQKSSSELQHAKETI---DNGKIVPRPCPP 1076
>KIC1_YEAST (P38692) Serine/threonine-protein kinase KIC1 (EC
2.7.1.37) (Kinase that interacts with CDC31) (N-rich
kinase 1)
Length = 1080
Score = 34.3 bits (77), Expect = 0.53
Identities = 38/140 (27%), Positives = 56/140 (39%), Gaps = 17/140 (12%)
Query: 227 PPISQHNKKVSR------LGSNPMNKLDSPPKTDSIITPNTRLKIHVPPR------PHPA 274
PP+S N S+ L NK P T + T T ++I +P P PA
Sbjct: 545 PPLSSGNNYYSQSTPALPLLQTKFNKTSKGPPTSGLTTAPTSIEIEIPEELPNSALPTPA 604
Query: 275 LASPSLASSTLADPRS----GPSVTQSILPTVPAMENCKIAMHRNPPKSQVNYTTILQGN 330
A P L ST A + PS + SI P+ ++ + N P+ + T +
Sbjct: 605 SADPVLIPSTKARSSTVTAGTPSSSSSIQYKSPSNVPRRLTVSNNRPEHCPSTITNQKLG 664
Query: 331 LLVNQSNHLLPATNNYSQHY 350
V SN + +T N S +Y
Sbjct: 665 SAV-ASNSGISSTPNNSNNY 683
>IF2_SYNEL (Q8DK04) Translation initiation factor IF-2
Length = 957
Score = 33.1 bits (74), Expect = 1.2
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 228 PISQHNKKVSRLGSNPMNKLDSPPKTDSIITPNTRLKIHVPPRPHPALASP 278
P S +KVS+ S P+ K +P KT I+ +T+ + P P P L P
Sbjct: 57 PHSASPRKVSKT-SPPVKKAPAPQKTQQIVAVHTQPRSETPEAPKPQLQKP 106
>CCAE_RABIT (Q02343) Voltage-dependent R-type calcium channel alpha-1E
subunit (Voltage-gated calcium channel alpha subunit
Cav2.3) (Calcium channel, L type, alpha-1 polypeptide,
isoform 6) (Brain calcium channel II) (BII)
Length = 2259
Score = 33.1 bits (74), Expect = 1.2
Identities = 25/90 (27%), Positives = 47/90 (51%), Gaps = 5/90 (5%)
Query: 226 RPPISQHNKKVSRLGSNPMNKLDSPPKTDSIITPNTRLKIH-VPPRPHPALASPSLAS-- 282
R P ++ SR G+ +++ P +D+ ++R ++ VPP+P P L+ SL
Sbjct: 2067 RSPSEGRSQSPSRQGTGSLSESSIPSVSDTSTPRHSRRQLPPVPPKPRPLLSYSSLKQQP 2126
Query: 283 STLADPRSGPSVTQSILPTVPAMENCKIAM 312
S + P G S S+L + PA+E+ ++ +
Sbjct: 2127 SNFSPPADG-SQGGSLLAS-PALESAQVGL 2154
>VP61_NPVOP (O10270) 61 kDa protein homolog
Length = 474
Score = 32.7 bits (73), Expect = 1.6
Identities = 21/76 (27%), Positives = 30/76 (38%), Gaps = 9/76 (11%)
Query: 259 PNTRLKIHVPPRPHPALASPSLASSTLA---------DPRSGPSVTQSILPTVPAMENCK 309
P+TR K VPP+P + PS ++ A P VT S+ P P +
Sbjct: 233 PDTRFKPPVPPKPEHLKSRPSSVATNAAGATPVAPPPPPFPSADVTTSMPPPPPPFPSAD 292
Query: 310 IAMHRNPPKSQVNYTT 325
+ PP V+ T
Sbjct: 293 VTTSMPPPPPMVDLAT 308
>SYJ2_MOUSE (Q9D2G5) Synaptojanin 2 (EC 3.1.3.36) (Synaptic
inositol-1,4,5-trisphosphate 5-phosphatase 2)
Length = 1434
Score = 32.7 bits (73), Expect = 1.6
Identities = 33/125 (26%), Positives = 45/125 (35%), Gaps = 15/125 (12%)
Query: 239 LGSNPMNKLDSPPKTDSIITPNTRLKIHVPPRPHPALASPSLA-----SSTLADPRSGPS 293
+ S MN PP T TP +PP P P P SS +P PS
Sbjct: 1208 MASQEMNLETPPPIT---ATP-------IPPVPKPRTLQPGKGVEGRPSSGKPEPDEAPS 1257
Query: 294 VTQSILPTVPAMENCKIAMHRNPPKSQVNYTTILQGNLLVNQSNHLLPATNNYSQHYLLK 353
VT ++ P + + PP+ + + +L N S L T + S LK
Sbjct: 1258 VTGTVESPPPEAQEAPSLAPKVPPRRKKSAPAAFHLQVLQNNSQVLQGLTCSSSSPPSLK 1317
Query: 354 PGKLP 358
P P
Sbjct: 1318 PDTHP 1322
>LB13_ARATH (Q9AT61) LOB domain protein 13
Length = 268
Score = 32.7 bits (73), Expect = 1.6
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 223 TGVRPPISQHNKKVSRLGSNPMNKLDSPPKTDSIITPNTRLKIHV----PPRPHPALASP 278
T VR I +H + + ++ N +S T S+ L + PP P P P
Sbjct: 146 TTVRTEILRHKYQEATTITSLQNNFNSTTTTSSVSCDQHALASAILLPPPPPPPPTPRPP 205
Query: 279 SLASSTLADPR----SGPSVTQSILPTVPAMENCKIAMHRNPPKSQVNYTTILQGN 330
L SS A P S PS + + + + + +M+ PP S Y+ L +
Sbjct: 206 RLLSSQPAPPPTPPVSLPSPSMVVSSSSSSNSSATNSMYNPPPSSTAGYSNSLSSD 261
>TAU_PAPHA (Q9MYX8) Microtubule-associated protein tau
(Neurofibrillary tangle protein) (Paired helical
filament-tau) (PHF-tau)
Length = 382
Score = 32.3 bits (72), Expect = 2.0
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 14/79 (17%)
Query: 261 TRLKIHVPPRPHPALASPSLASSTLADPRSGPSVTQS-----------ILPTVPAMENCK 309
TR+ PP P PS + RSG S S LPT PA E K
Sbjct: 110 TRIPAKTPPAPK---TPPSSGEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPAREPKK 166
Query: 310 IAMHRNPPKSQVNYTTILQ 328
+A+ R PPKS + + LQ
Sbjct: 167 VAVVRTPPKSPSSAKSRLQ 185
>TAU_BOVIN (P29172) Microtubule-associated protein tau
(Neurofibrillary tangle protein) (Paired helical
filament-tau) (PHF-tau)
Length = 447
Score = 32.0 bits (71), Expect = 2.7
Identities = 33/107 (30%), Positives = 43/107 (39%), Gaps = 22/107 (20%)
Query: 224 GVRPPISQHNKKVSRLGSNPMNKLDSPPKTDSIITPNTRLKIHVPPRPHPALASPSLASS 283
G PP + +R+ + K PKT +P T + V +P PA A S
Sbjct: 146 GAAPPGQKGQANATRIPA----KTTPTPKT----SPAT---MQVQKKPPPAGAKSERGES 194
Query: 284 TLADPRSGPSVTQS-----------ILPTVPAMENCKIAMHRNPPKS 319
+ RSG S S LPT P E K+A+ R PPKS
Sbjct: 195 GKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPKS 241
>COQ4_DROME (Q9VVG6) Ubiquinone biosynthesis protein COQ4 homolog
Length = 268
Score = 32.0 bits (71), Expect = 2.7
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 135 RVQYIPSGTVYLYTFGYSIYLRASVSRFVMIRCAGKTRSE------MSITEAFDEDPDFM 188
R++ P ++L G SI + R MI C G+T E + +A +E M
Sbjct: 49 RIEISPFQRLFLGA-GSSIAALLNPRRHDMIACLGETTGEDALWTILDTMQASEEGQRIM 107
Query: 189 ADRGRVDNSSVGYGWLES 206
AD+ R+ S++ + +LE+
Sbjct: 108 ADKPRIHTSTIDFKYLET 125
>CHMO_ATRHO (Q9LKN0) Choline monooxygenase, chloroplast precursor
(EC 1.14.15.7)
Length = 438
Score = 32.0 bits (71), Expect = 2.7
Identities = 21/67 (31%), Positives = 35/67 (51%), Gaps = 5/67 (7%)
Query: 241 SNPMNKLDSPPKTDSIITPNTRLKIHVPPRPHPALASP---SLASSTLADPRSGPSVTQS 297
++P N + P+T + +P LK P +P A+A+P S+ ++T P S S+ +
Sbjct: 28 TDPSNNIVQIPQTTTTNSP--LLKFRTPNKPVNAVAAPAFPSVTTTTTTTPSSIQSLVKD 85
Query: 298 ILPTVPA 304
P VPA
Sbjct: 86 FDPLVPA 92
>ABF1_HUMAN (Q15911) Alpha-fetoprotein enhancer binding protein (AT
motif-binding factor) (AT-binding transcription factor 1)
Length = 3703
Score = 32.0 bits (71), Expect = 2.7
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 268 PPRPHPALASPSLASSTLADPRSGPSVTQ-SILPTVPAMENCKIAMHRNPP 317
PP P P A+P +ST A P S P +T +I P P++ +++M P
Sbjct: 2045 PPPPPPLPAAPPQPASTPAIPASAPPITSPTIAPAQPSVPLTQLSMPMELP 2095
>YM38_YEAST (Q03825) Hypothetical 85.0 kDa protein in HLJ1-SMP2
intergenic region
Length = 758
Score = 31.6 bits (70), Expect = 3.5
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 250 PPKTDSIITPNTRLKIHVPPRPHPALASPSLASSTLADPRSGPSVTQSILPTVPAMENCK 309
PP T+ I N + + P + +P + ++ PS ++ P +N
Sbjct: 516 PPDTNRIAPANNTMPLQPGNMGSPVIENPGMR-------QTNPSGQNPMINMQPLYQNVS 568
Query: 310 IAMHRNPPKSQVNYTTILQGNLLV--NQSNHLLPATNN 345
AMH P+ Q + + N V N S + P NN
Sbjct: 569 SAMHAFAPQQQFHLPQHYKTNTSVPQNDSTSVFPLPNN 606
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,644,590
Number of Sequences: 164201
Number of extensions: 2107997
Number of successful extensions: 5397
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 5366
Number of HSP's gapped (non-prelim): 62
length of query: 378
length of database: 59,974,054
effective HSP length: 112
effective length of query: 266
effective length of database: 41,583,542
effective search space: 11061222172
effective search space used: 11061222172
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0103.4