BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0101.5
(967 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 478 e-134
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 440 e-123
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 147 1e-34
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 140 2e-32
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 107 2e-22
YMU0_YEAST (Q04670) Transposon Ty1 protein B 106 3e-22
YJZ9_YEAST (P47100) Transposon Ty1 protein B 106 3e-22
YMT5_YEAST (Q04214) Transposon Ty1 protein B 103 3e-21
YME4_YEAST (Q04711) Transposon Ty1 protein B 103 3e-21
YMD9_YEAST (Q03434) Transposon Ty1 protein B 101 8e-21
YJZ7_YEAST (P47098) Transposon Ty1 protein B 100 3e-20
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 99 5e-20
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 98 9e-20
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 65 7e-10
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 55 7e-07
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 53 3e-06
M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710... 52 6e-06
POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.2... 51 1e-05
POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.2... 51 1e-05
POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.2... 51 1e-05
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 478 bits (1231), Expect = e-134
Identities = 312/995 (31%), Positives = 514/995 (51%), Gaps = 53/995 (5%)
Query: 3 IDNVLLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVSQIDGS-VLFNSKRRNNTYKIRL 61
+ +V V L NL+S L GY+ F + R GS V+ R Y+
Sbjct: 350 LKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTK---GSLVIAKGVARGTLYRTNA 406
Query: 62 FELETQKVKCLLSVNEEQWV*HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSDALCEACQ 121
+ + ++ + W H+R+GH S + + L K L+ K ++ C+ C
Sbjct: 407 EICQGELNAAQDEISVDLW--HKRMGHMSEKGLQILAKKSLIS---YAKGTTVKPCDYCL 461
Query: 122 KGKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFIS 181
GK +VSF+ + + L+L++ D+ GP++ ES+GG +Y + +DD SR WV +
Sbjct: 462 FGKQHRVSFQTSSERKLNI-LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILK 520
Query: 182 RKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQ 241
KD+ VF F V+ E ++ R+RSD+GG + + +FE S+GI ++ + P TPQ
Sbjct: 521 TKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQ 580
Query: 242 QNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKK 301
NGV ER NRT+ E R+ML+ + K FW EAV T+CY+ NR P+ + P +W
Sbjct: 581 HNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTN 640
Query: 302 VKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTDAKTIEEYI 361
+ + S+ FGC +A K++ K D KS C+ +GY G+R+++ K +
Sbjct: 641 KEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSR 700
Query: 362 HVRFDD---KLDSDQSKLVEK-FVDMSINVSDKGKAPEEAEPEEDSPEEVGPSDPQPQKK 417
V F + + +D S+ V+ + + + P AE D E G + ++
Sbjct: 701 DVVFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQ 760
Query: 418 SRIV------ASHP-----KELILGNKDEPVRTRSAFRPSEETLLSLKGLVSLIEPKSID 466
+ HP + L + P R S PS E +L + EP+S+
Sbjct: 761 GEQLDEGVEEVEHPTQGEEQHQPLRRSERP-RVESRRYPSTEYVL----ISDDREPESLK 815
Query: 467 EALQ--DKDWIL-AMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNEKGDVVRNK 523
E L +K+ ++ AM+EE+ KN + +V+ P+G + KWVF+ K + +VR K
Sbjct: 816 EVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYK 875
Query: 524 ARLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEE 583
ARLV +G+ Q++GID+ E F+PV ++ +IR ++S + + ++ + Q+DVK+ FL+G + EE
Sbjct: 876 ARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEE 935
Query: 584 VYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERL-RFLLENEFVRGKVDTTLFCK 642
+Y+ QP GFE V L KSLYGLKQAPR WY + F+ +++ D ++ K
Sbjct: 936 IYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFK 995
Query: 643 TY-KDDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKYFLGIQV--DQTP 699
+ +++ +I+ +YVDD++ + L + + F+M +G + LG+++ ++T
Sbjct: 996 RFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTS 1055
Query: 700 EATYIHQSKYTKELLKKFNMTESIIAKT----------LMHPTCILEKEDASGKVCQKLY 749
++ Q KY + +L++FNM + T M PT + EK G + + Y
Sbjct: 1056 RKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEK----GNMAKVPY 1111
Query: 750 RGMICSFLY-LTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKT 808
+ S +Y + +RPDI + + +RF +P + H VK ILRYL+GTT L +
Sbjct: 1112 SSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF-GG 1170
Query: 809 SEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAIC 868
S+ L GY DAD AGD RKS++G +SW SK Q +ALST EAEYI+
Sbjct: 1171 SDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATET 1230
Query: 869 NT*MLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKYIEVKYHFIRDYVQKG 928
M+W+K L++ + + +YCD+ +AI LSKN + H+R K+I+V+YH+IR+ V
Sbjct: 1231 GKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDE 1290
Query: 929 YFF*SSLILTINSADIFTKPLAEDRFKFILKNLNM 963
+ N AD+ TK + ++F+ + + M
Sbjct: 1291 SLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 440 bits (1132), Expect = e-123
Identities = 325/1060 (30%), Positives = 523/1060 (48%), Gaps = 121/1060 (11%)
Query: 3 IDNVLLVDGLNHNLLSISQLADKGYDIIFNQKSCRAVSQIDGSVLFNSKRRNNTYKIRLF 62
+++VL NL+S+ +L + G I F+ KS +S+ V+ NS NN + +
Sbjct: 345 LEDVLFCKEAAGNLMSVKRLQEAGMSIEFD-KSGVTISKNGLMVVKNSGMLNN---VPVI 400
Query: 63 ELETQKVKCLLSVNEEQWV*HRRLGHASMRKIS*LCKLDLVRG---LPTLKFSSDALCEA 119
+ + N W H R GH S K+ + + ++ L L+ S + +CE
Sbjct: 401 NFQAYSINAKHKNNFRLW--HERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCE-ICEP 457
Query: 120 CQKGKFTKVSFKA-KNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVK 178
C GK ++ FK K+ RPL ++H D+ GP+ ++ K Y ++ VD ++ +
Sbjct: 458 CLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTY 517
Query: 179 FISRKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPR 238
I K + S+F F+ + + +++ + D+G + +++ GI+Y + P
Sbjct: 518 LIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPH 577
Query: 239 TPQQNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPIL------- 291
TPQ NGV ER RT+ E +RTM+ + K FW EAV T+ Y+ NRI R ++
Sbjct: 578 TPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPY 637
Query: 292 ----NKTPYELWKKVKPNISYFH---------------------PFGCVCY-ALNTK--- 322
NK PY +V Y H P G + A+N K
Sbjct: 638 EMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGYEPNGFKLWDAVNEKFIV 697
Query: 323 ------DRLHKFDSKSSK--CLLLGYSKRSKGFRIYNTDAKTIE--------EYIHVRF- 365
D + +S++ K + L SK S+ N K I+ E +++F
Sbjct: 698 ARDVVVDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFL 757
Query: 366 -------DDKLDSDQSKLVE-------------KFVDMSINVSDKGKAPEEAEPEEDSP- 404
+ +D K+++ +F+ S S+K E + + D
Sbjct: 758 KDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDS-KESNKYFLNESKKRKRDDHL 816
Query: 405 -EEVGPSDPQPQKKSRIVASHPKEL------------ILGNKDEPVRTRSAFRPSEE--- 448
E G +P ++S A H KE+ I+ + E ++T+ +EE
Sbjct: 817 NESKGSGNPNESRESE-TAEHLKEIGIDNPTKNDGIEIINRRSERLKTKPQISYNEEDNS 875
Query: 449 ---TLLSLKGLVSLIEPKSIDEALQDKD---WILAMEEELNQFSKNDVWNIVKKPQGVHI 502
+L+ + + + P S DE D W A+ ELN N+ W I K+P+ +I
Sbjct: 876 LNKVVLNAHTIFNDV-PNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNI 934
Query: 503 IGTKWVFRNKLNEKGDVVRNKARLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNH 562
+ ++WVF K NE G+ +R KARLVA+G+ Q+ IDY ETFAPVAR+ + R ++S + +
Sbjct: 935 VDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQY 994
Query: 563 NIILHQMDVKSVFLNGYISEEVYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERL 622
N+ +HQMDVK+ FLNG + EE+Y+ P G N D+V L K++YGLKQA R W+E
Sbjct: 995 NLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAIYGLKQAARCWFEVF 1052
Query: 623 -RFLLENEFVRGKVDTTLFC--KTYKDDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEF 679
+ L E EFV VD ++ K ++ + V +YVDD++ + + + F + +F
Sbjct: 1053 EQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKF 1112
Query: 680 EMSMMGELKYFLGIQVDQTPEATYIHQSKYTKELLKKFNMTESIIAKTLMHPTCILEKED 739
M+ + E+K+F+GI+++ + Y+ QS Y K++L KFNM E+ A + P+ I +
Sbjct: 1113 RMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNM-ENCNAVSTPLPSKINYELL 1171
Query: 740 ASGKVCQKLYRGMI-CSFLYLTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGT 798
S + C R +I C + +RPD+ + ++ +R+ S +KR+LRYLKGT
Sbjct: 1172 NSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGT 1231
Query: 799 TNLGLLYKK--TSEYKLSGYCDADYAGDRTERKSTSGNC-QFLGSNLVSWASKRQSTIAL 855
++ L++KK E K+ GY D+D+AG +RKST+G + NL+ W +KRQ+++A
Sbjct: 1232 IDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAA 1291
Query: 856 STAEAEYISIAICNT*MLWMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKYI 914
S+ EAEY+++ LW+K L I LE+ I IY DN IS++ NP H RAK+I
Sbjct: 1292 SSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHI 1351
Query: 915 EVKYHFIRDYVQKGYFF*SSLILTINSADIFTKPLAEDRF 954
++KYHF R+ VQ + ADIFTKPL RF
Sbjct: 1352 DIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARF 1391
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 147 bits (372), Expect = 1e-34
Identities = 94/308 (30%), Positives = 157/308 (50%), Gaps = 20/308 (6%)
Query: 569 MDVKSVFLNGYISEEVYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERLRFLLEN 628
MDV + FLN + E +YV QPPGF +E+NPD+V+ L +YGLKQAP W E + L+
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 629 -EFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGEL 687
F R + + L+ ++ D + + +YVDD++ + + + + + + M +G++
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 688 KYFLGIQVDQTPEA-------TYIHQSKYTKELLKKFNMTESII--AKTLMHPTCILEKE 738
FLG+ + Q+ YI ++ E + F +T++ + +K L T K+
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESE-INTFKLTQTPLCNSKPLFETTSPHLKD 179
Query: 739 DASGKVCQKLYRGMICSFLY-LTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKG 797
Y+ ++ L+ RPDI + L +RF +PR HL +R+LRYL
Sbjct: 180 ITP-------YQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYT 232
Query: 798 TTNLGLLYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKR-QSTIALS 856
T ++ L Y+ S+ L+ YCDA + ST G L V+W+SK+ + I +
Sbjct: 233 TRSMCLKYRSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVP 292
Query: 857 TAEAEYIS 864
+ EAEYI+
Sbjct: 293 STEAEYIT 300
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 140 bits (353), Expect = 2e-32
Identities = 70/222 (31%), Positives = 125/222 (55%), Gaps = 1/222 (0%)
Query: 653 IYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEATYIHQSKYTKE 712
+YVDDI+ ++++L + + F M +G + YFLGIQ+ P ++ Q+KY ++
Sbjct: 5 LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64
Query: 713 LLKKFNMTESIIAKTLMHPTCILEKEDASGKVCQKLYRGMICSFLYLTASRPDILFSEHL 772
+L M + T + P + + +R ++ + YLT +RPDI ++ ++
Sbjct: 65 ILNNAGMLDCKPMSTPL-PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 123
Query: 773 CARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKTSEYKLSGYCDADYAGDRTERKSTS 832
+ +P ++KR+LRY+KGT GL K S+ + +CD+D+AG + R+ST+
Sbjct: 124 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 183
Query: 833 GNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAICNT*MLW 874
G C FLG N++SW++KRQ T++ S+ E EY ++A+ + W
Sbjct: 184 GFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 107 bits (266), Expect = 2e-22
Identities = 108/386 (27%), Positives = 172/386 (43%), Gaps = 36/386 (9%)
Query: 14 HNLLSISQLADKGYDIIFNQKSCRAVSQIDGSVLFNSKRRNNTYKI--------RLFELE 65
++LLS+S+LA++ F + + + + DG+VL + + Y + + +L
Sbjct: 520 YDLLSLSELANQNITACFTRNT---LERSDGTVLAPIVKHGDFYWLSKKYLIPSHISKLT 576
Query: 66 TQKVKCLLSVNEEQW-V*HRRLGHASMRKIS*LCKLDLVRGLPTLKF----SSDALCEAC 120
V SVN+ + + HR LGHA+ R I K + V L +S C C
Sbjct: 577 INNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDC 636
Query: 121 QKGKFTK---VSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWV 177
GK TK V + P + LH D+FGPV Y + D+ +R+ WV
Sbjct: 637 LIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWV 696
Query: 178 KFI-SRKDESH-SVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFS 235
+ R++ES +VF++ + ++N+ R++ ++ D G + N F + GI ++
Sbjct: 697 YPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYT 756
Query: 236 CPRTPQQNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTP 295
+ +GV ER NRTL RT+L + H W AV S I+N + V P +K+
Sbjct: 757 TTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSL-VSPKNDKSA 815
Query: 296 YELWKKVKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGY----SKRSKGFRIYN 351
+ +I+ PFG N H DSK + GY S+ S G+ IY
Sbjct: 816 RQHAGLAGLDITTILPFGQPVIVNN-----HNPDSKIHPRGIPGYALHPSRNSYGYIIYL 870
Query: 352 TD-AKTIEEYIHVRFDDKLDSDQSKL 376
KT++ +V DK QSKL
Sbjct: 871 PSLKKTVDTTNYVILQDK----QSKL 892
Score = 104 bits (259), Expect = 1e-21
Identities = 135/571 (23%), Positives = 256/571 (44%), Gaps = 74/571 (12%)
Query: 435 EPVRTRSAFRPSEETLLSLKGLVSLIEPKSI---DEAL------QDKD-WILAMEEELNQ 484
EP R++ + ++KG+ S+ ++ DEA+ ++KD ++ A +E++Q
Sbjct: 1220 EPPRSKKRIN----LIAAIKGVKSIKPVRTTLRYDEAITYNKDNKEKDRYVEAYHKEISQ 1275
Query: 485 FSKNDVWNIVK-------KPQGVHIIGTKWVFRNKLNEKGDVVRNKARLVAQGYRQQEGI 537
K + W+ K P+ V I + ++F N+K D +KAR VA+G Q
Sbjct: 1276 LLKMNTWDTNKYYDRNDIDPKKV--INSMFIF----NKKRDGT-HKARFVARGDIQHPDT 1328
Query: 538 DYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEEVYVHQPP--GFEDE 595
++ + A+ +S +++++ + Q+D+ S +L I EE+Y+ PP G D+
Sbjct: 1329 YDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELYIRPPPHLGLNDK 1388
Query: 596 KNPDHVFNLKKSLYGLKQAPRAWYERLRFLLEN----EFVRGKVDTTLFCKTYKDDILIV 651
+ L+KSLYGLKQ+ WYE ++ L N + VRG + +K+ + +
Sbjct: 1389 -----LLRLRKSLYGLKQSGANWYETIKSYLINCCDMQEVRG------WSCVFKNSQVTI 1437
Query: 652 QIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMM------GELKY-FLGIQVD-QTPEATY 703
++VDD+I S + + K+ ++ +++ ++ E++Y LG+++ Q +
Sbjct: 1438 CLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRSKYMK 1497
Query: 704 IHQSKYTKELLKKFNMTESIIAKTLMHP----------TCILEKEDASGKV--CQKLYRG 751
+ K E L K N+ + K L P +++++ KV QKL G
Sbjct: 1498 LGMEKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDELEIDEDEYKEKVHEMQKLI-G 1556
Query: 752 MICSFLYLTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKTS-- 809
+ Y R D+L+ + A+ P L + +++++ T + L++ K
Sbjct: 1557 LASYVGY--KFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPT 1614
Query: 810 --EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAI 867
+ KL DA Y G++ KS GN L ++ S + S ST EAE +++
Sbjct: 1615 KPDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSE 1673
Query: 868 CNT*MLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS-RAKYIEVKYHFIRDYVQ 926
+ + H +++ + D+ + IS+ K+ R ++ K +RD V
Sbjct: 1674 AIPLLNNLSHLVQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVS 1733
Query: 927 KGYFF*SSLILTINSADIFTKPLAEDRFKFI 957
+ + N AD+ TKPL FK +
Sbjct: 1734 GNNLYVYYIETKKNIADVMTKPLPIKTFKLL 1764
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 106 bits (264), Expect = 3e-22
Identities = 123/523 (23%), Positives = 229/523 (43%), Gaps = 54/523 (10%)
Query: 470 QDKDWILAMEEELNQFSKNDVWNIV-----KKPQGVHIIGTKWVFRNKLNEKGDVVRNKA 524
+ + +I A +E+NQ K W+ K+ +I + ++F K + +KA
Sbjct: 819 EKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRKRDGT-----HKA 873
Query: 525 RLVAQGYRQQEGIDYTETFAPVARLE-----AIRLLISFSVNHNIILHQMDVKSVFLNGY 579
R VA+G I + +T+ P + A+ +S ++++N + Q+D+ S +L
Sbjct: 874 RFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYAD 928
Query: 580 ISEEVYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERLRFLLENEFVRGKVDTTL 639
I EE+Y+ PP D + LKKSLYGLKQ+ WYE ++ L + G +
Sbjct: 929 IKEELYIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIKQC--GMEEVRG 983
Query: 640 FCKTYKDDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMM------GELKY-FLG 692
+ +K+ + + ++VDD+I S + + K+ ++ +++ ++ E++Y LG
Sbjct: 984 WSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILG 1043
Query: 693 IQVD-QTPEATYIHQSKYTKELLKKFNMTESIIAKTLMHP----------TCILEKEDAS 741
+++ Q + + E + K N+ + + L P LE++D
Sbjct: 1044 LEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYK 1103
Query: 742 GKV--CQKLYRGMICSFLYLTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTT 799
KV QKL G+ Y R D+L+ + A+ P + L + +++++ T
Sbjct: 1104 MKVHEMQKLI-GLASYVGY--KFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTR 1160
Query: 800 NLGLLYKKTSEY----KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIAL 855
+ L++ K+ KL DA Y G++ KS GN L ++ S + S
Sbjct: 1161 DKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCT 1219
Query: 856 STAEAEYISIAICNT*MLWMKHQLEDYQILESNIPIYCDNTAAIS-LSKNPILHSRAKYI 914
ST EAE +I+ + + H +++ + D+ + IS + N R ++
Sbjct: 1220 STTEAEIHAISESVPLLNNLSHLVQELNKKPITKGLLTDSKSTISIIISNNEEKFRNRFF 1279
Query: 915 EVKYHFIRDYVQKGYFF*SSLILTINSADIFTKPLAEDRFKFI 957
K +RD V + + N AD+ TKPL FK +
Sbjct: 1280 GTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 84.0 bits (206), Expect = 2e-15
Identities = 71/277 (25%), Positives = 119/277 (42%), Gaps = 11/277 (3%)
Query: 83 HRRLGHASMRKIS*LCKLDLVRGL--PTLKFSS--DALCEACQKGKFTK---VSFKAKNV 135
HR L HA+ + I K + + + +SS D C C GK TK +
Sbjct: 172 HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 231
Query: 136 VSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFIS--RKDESHSVFSTF 193
++ P + LH D+FGPV Y + D+ +++ WV + R+D VF+T
Sbjct: 232 QNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTI 291
Query: 194 IVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQQNGVVERKNRTL 253
+ ++N+ ++ ++ D G + N + GI ++ + +GV ER NRTL
Sbjct: 292 LAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTL 351
Query: 254 QEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKKVKPNISYFHPFG 313
+ RT LQ + H W A+ S ++N ++ P K+ + +IS PFG
Sbjct: 352 LDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA-SPKSKKSARQHAGLAGLDISTLLPFG 410
Query: 314 CVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIY 350
+N + K + L S+ S G+ IY
Sbjct: 411 -QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIY 446
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 106 bits (264), Expect = 3e-22
Identities = 123/518 (23%), Positives = 227/518 (43%), Gaps = 44/518 (8%)
Query: 470 QDKDWILAMEEELNQFSKNDVWNIV-----KKPQGVHIIGTKWVFRNKLNEKGDVVRNKA 524
+ + +I A +E+NQ K W+ K+ +I + ++F N+K D +KA
Sbjct: 1246 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKA 1300
Query: 525 RLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEEV 584
R VA+G Q + + A+ +S ++++N + Q+D+ S +L I EE+
Sbjct: 1301 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 1360
Query: 585 YVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERLRFLLENEFVRGKVDTTLFCKTY 644
Y+ PP D + LKKSLYGLKQ+ WYE ++ L + G + + +
Sbjct: 1361 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIQQC--GMEEVRGWSCVF 1415
Query: 645 KDDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMG------ELKY-FLGIQVD- 696
K+ + + ++VDD++ S N + K E ++ +++ ++ E++Y LG+++
Sbjct: 1416 KNSQVTICLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGESDEEIQYDILGLEIKY 1475
Query: 697 QTPEATYIHQSKYTKELLKKFNMTESIIAKTLMHP----------TCILEKEDASGKV-- 744
Q + + E + K N+ + + L P LE++D KV
Sbjct: 1476 QRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHE 1535
Query: 745 CQKLYRGMICSFLYLTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLL 804
QKL G+ Y R D+L+ + A+ P + L + +++++ T + L+
Sbjct: 1536 MQKLI-GLASYVGY--KFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLI 1592
Query: 805 YKKTSEY----KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEA 860
+ K+ KL DA Y G++ KS GN L ++ S + S ST EA
Sbjct: 1593 WHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEA 1651
Query: 861 EYISIAICNT*MLWMKHQLEDYQILESNIPIYCDNTAAIS-LSKNPILHSRAKYIEVKYH 919
E +I+ + + + +++ + D+ + IS + N R ++ K
Sbjct: 1652 EIHAISESVPLLNNLSYLIQELDKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAM 1711
Query: 920 FIRDYVQKGYFF*SSLILTINSADIFTKPLAEDRFKFI 957
+RD V + + N AD+ TKPL FK +
Sbjct: 1712 RLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1749
Score = 84.0 bits (206), Expect = 2e-15
Identities = 71/277 (25%), Positives = 119/277 (42%), Gaps = 11/277 (3%)
Query: 83 HRRLGHASMRKIS*LCKLDLVRGL--PTLKFSS--DALCEACQKGKFTK---VSFKAKNV 135
HR L HA+ + I K + + + +SS D C C GK TK +
Sbjct: 599 HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 658
Query: 136 VSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFIS--RKDESHSVFSTF 193
++ P + LH D+FGPV Y + D+ +++ WV + R+D VF+T
Sbjct: 659 QNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTI 718
Query: 194 IVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQQNGVVERKNRTL 253
+ ++N+ ++ ++ D G + N + GI ++ + +GV ER NRTL
Sbjct: 719 LAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTL 778
Query: 254 QEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKKVKPNISYFHPFG 313
+ RT LQ + H W A+ S ++N ++ P K+ + +IS PFG
Sbjct: 779 LDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA-SPKSKKSARQHAGLAGLDISTLLPFG 837
Query: 314 CVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIY 350
+N + K + L S+ S G+ IY
Sbjct: 838 -QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIY 873
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 103 bits (256), Expect = 3e-21
Identities = 119/518 (22%), Positives = 225/518 (42%), Gaps = 44/518 (8%)
Query: 470 QDKDWILAMEEELNQFSKNDVWNIVK-----KPQGVHIIGTKWVFRNKLNEKGDVVRNKA 524
+ + +I A +E+NQ K W+ K + +I + ++F K + +KA
Sbjct: 819 EKEKYIEAYHKEVNQLLKMKTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGT-----HKA 873
Query: 525 RLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEEV 584
R VA+G Q + + A+ +S ++++N + Q+D+ S +L I EE+
Sbjct: 874 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 585 YVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERLRFLLENEFVRGKVDTTLFCKTY 644
Y+ PP D + LKKSLYGLKQ+ WYE ++ L + G + + +
Sbjct: 934 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIKQC--GMEEVRGWSCVF 988
Query: 645 KDDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMG------ELKY-FLGIQVD- 696
++ + + ++VDD++ S N + K + ++ +++ ++ E++Y LG+++
Sbjct: 989 ENSQVTICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGESDEEIQYDILGLEIKY 1048
Query: 697 QTPEATYIHQSKYTKELLKKFNMTESIIAKTLMHP----------TCILEKEDASGKV-- 744
Q + + E + K N+ + + L P LE++D KV
Sbjct: 1049 QRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHE 1108
Query: 745 CQKLYRGMICSFLYLTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLL 804
QKL G+ Y R D+L+ + A+ P + L + +++++ T + L+
Sbjct: 1109 MQKLI-GLASYVGY--KFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLI 1165
Query: 805 YKKTSEY----KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEA 860
+ K+ KL DA Y G++ KS GN L ++ S + S ST EA
Sbjct: 1166 WHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEA 1224
Query: 861 EYISIAICNT*MLWMKHQLEDYQILESNIPIYCDNTAAIS-LSKNPILHSRAKYIEVKYH 919
E +I+ + + + +++ + D+ + IS + N R ++ K
Sbjct: 1225 EIHAISESVPLLNNLSYLIQELDKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAM 1284
Query: 920 FIRDYVQKGYFF*SSLILTINSADIFTKPLAEDRFKFI 957
+RD V + + N AD+ TKPL FK +
Sbjct: 1285 RLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 84.0 bits (206), Expect = 2e-15
Identities = 71/277 (25%), Positives = 119/277 (42%), Gaps = 11/277 (3%)
Query: 83 HRRLGHASMRKIS*LCKLDLVRGL--PTLKFSS--DALCEACQKGKFTK---VSFKAKNV 135
HR L HA+ + I K + + + +SS D C C GK TK +
Sbjct: 172 HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 231
Query: 136 VSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFIS--RKDESHSVFSTF 193
++ P + LH D+FGPV Y + D+ +++ WV + R+D VF+T
Sbjct: 232 QNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTI 291
Query: 194 IVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQQNGVVERKNRTL 253
+ ++N+ ++ ++ D G + N + GI ++ + +GV ER NRTL
Sbjct: 292 LAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTL 351
Query: 254 QEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKKVKPNISYFHPFG 313
+ RT LQ + H W A+ S ++N ++ P K+ + +IS PFG
Sbjct: 352 LDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA-SPKSKKSARQHAGLAGLDISTLLPFG 410
Query: 314 CVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIY 350
+N + K + L S+ S G+ IY
Sbjct: 411 -QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIY 446
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 103 bits (256), Expect = 3e-21
Identities = 118/518 (22%), Positives = 225/518 (42%), Gaps = 44/518 (8%)
Query: 470 QDKDWILAMEEELNQFSKNDVWNIVK-----KPQGVHIIGTKWVFRNKLNEKGDVVRNKA 524
+ + +I A +E+NQ K + W+ K + +I + ++F K + +KA
Sbjct: 819 EKEKYIEAYHKEVNQLLKMNTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGT-----HKA 873
Query: 525 RLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEEV 584
R VA+G Q + + A+ +S ++++N + Q+D+ S +L I EE+
Sbjct: 874 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 585 YVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERLRFLLENEFVRGKVDTTLFCKTY 644
Y+ PP D + LKKSLYGLKQ+ WYE ++ L + G + + +
Sbjct: 934 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIKQC--GMEEVRGWSCVF 988
Query: 645 KDDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMG------ELKY-FLGIQVD- 696
K+ + + ++VDD+I S + + K+ ++ +++ ++ E++Y LG+++
Sbjct: 989 KNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKY 1048
Query: 697 QTPEATYIHQSKYTKELLKKFNMTESIIAKTLMHP----------TCILEKEDASGKV-- 744
Q + + E + K N+ + + L P +++++ KV
Sbjct: 1049 QRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHE 1108
Query: 745 CQKLYRGMICSFLYLTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLL 804
QKL G+ Y R D+L+ + A+ P L + +++++ T + L+
Sbjct: 1109 MQKLI-GLASYVGY--KFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLI 1165
Query: 805 YKKTS----EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEA 860
+ K + KL DA Y G++ KS GN L ++ S + S ST EA
Sbjct: 1166 WHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEA 1224
Query: 861 EYISIAICNT*MLWMKHQLEDYQILESNIPIYCDNTAAIS-LSKNPILHSRAKYIEVKYH 919
E +I+ + + H +++ + D+ + IS + N R ++ K
Sbjct: 1225 EIHAISESVPLLNNLSHLVQELNKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAM 1284
Query: 920 FIRDYVQKGYFF*SSLILTINSADIFTKPLAEDRFKFI 957
+RD V + + N AD+ TKPL FK +
Sbjct: 1285 RLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 84.0 bits (206), Expect = 2e-15
Identities = 71/277 (25%), Positives = 119/277 (42%), Gaps = 11/277 (3%)
Query: 83 HRRLGHASMRKIS*LCKLDLVRGL--PTLKFSS--DALCEACQKGKFTK---VSFKAKNV 135
HR L HA+ + I K + + + +SS D C C GK TK +
Sbjct: 172 HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 231
Query: 136 VSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFIS--RKDESHSVFSTF 193
++ P + LH D+FGPV Y + D+ +++ WV + R+D VF+T
Sbjct: 232 QNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTI 291
Query: 194 IVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQQNGVVERKNRTL 253
+ ++N+ ++ ++ D G + N + GI ++ + +GV ER NRTL
Sbjct: 292 LAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTL 351
Query: 254 QEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKKVKPNISYFHPFG 313
+ RT LQ + H W A+ S ++N ++ P K+ + +IS PFG
Sbjct: 352 LDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA-SPKSKKSARQHAGLAGLDISTLLPFG 410
Query: 314 CVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIY 350
+N + K + L S+ S G+ IY
Sbjct: 411 -QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIY 446
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 101 bits (252), Expect = 8e-21
Identities = 122/522 (23%), Positives = 230/522 (43%), Gaps = 52/522 (9%)
Query: 470 QDKDWILAMEEELNQFSKNDVWNIV-----KKPQGVHIIGTKWVFRNKLNEKGDVVRNKA 524
+ + +I A +E+NQ K W+ K+ +I + ++F N+K D +KA
Sbjct: 819 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKA 873
Query: 525 RLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEEV 584
R VA+G Q + + A+ +S ++++N + Q+D+ S +L I EE+
Sbjct: 874 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 585 YVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERLRFLLENEFVRGKVDTTLFCKTY 644
Y+ PP D + LKKSLYGLKQ+ WYE ++ L + G + + +
Sbjct: 934 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIKQC--GMEEVRGWSCVF 988
Query: 645 KDDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMG------ELKY-FLGIQVD- 696
K+ + + ++VDD+I S + + K+ ++ +++ ++ E++Y LG+++
Sbjct: 989 KNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKY 1048
Query: 697 QTPEATYIHQSKYTKELLKKFNMTESIIAKTLMHP----------TCILEKEDASGKV-- 744
Q + + E + K N+ + + L P +++++ KV
Sbjct: 1049 QRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHE 1108
Query: 745 CQKLYRGMICSFLYLTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLL 804
QKL G+ Y R D+L+ + A+ P L + +++++ T + L+
Sbjct: 1109 MQKLI-GLASYVGY--KFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLI 1165
Query: 805 YKKTS----EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEA 860
+ K + KL DA Y G++ KS GN L ++ S + S ST EA
Sbjct: 1166 WHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEA 1224
Query: 861 EY----ISIAICNT*MLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS-RAKYIE 915
E S+ + N + ++ +L I++ + D+ + IS+ K+ R ++
Sbjct: 1225 EIHAISESVPLLNN-LSYLIQELNKKPIIKG---LLTDSRSTISIIKSTNEEKFRNRFFG 1280
Query: 916 VKYHFIRDYVQKGYFF*SSLILTINSADIFTKPLAEDRFKFI 957
K +RD V + + N AD+ TKPL FK +
Sbjct: 1281 TKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 82.4 bits (202), Expect = 5e-15
Identities = 69/277 (24%), Positives = 115/277 (40%), Gaps = 11/277 (3%)
Query: 83 HRRLGHASMRKIS*LCKLDLVRGLPTLKFSS----DALCEACQKGKFTK---VSFKAKNV 135
HR L HA+ + I K + + D C C GK TK +
Sbjct: 172 HRMLAHANAQTIRYSLKNNTITYFNESDVDRSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 231
Query: 136 VSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFIS--RKDESHSVFSTF 193
++ P + LH D+FGPV Y + D+ +++ WV + R+D VF+T
Sbjct: 232 QNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTI 291
Query: 194 IVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQQNGVVERKNRTL 253
+ ++N+ ++ ++ D G + N + GI ++ + +GV ER NRTL
Sbjct: 292 LAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTL 351
Query: 254 QEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKKVKPNISYFHPFG 313
+ RT LQ + H W A+ S ++N ++ P K+ + +IS PFG
Sbjct: 352 LDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA-SPKSKKSARQHAGLAGLDISTLLPFG 410
Query: 314 CVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIY 350
+N + K + L S+ S G+ IY
Sbjct: 411 -QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIY 446
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 99.8 bits (247), Expect = 3e-20
Identities = 122/522 (23%), Positives = 229/522 (43%), Gaps = 52/522 (9%)
Query: 470 QDKDWILAMEEELNQFSKNDVWNIV-----KKPQGVHIIGTKWVFRNKLNEKGDVVRNKA 524
+ + +I A +E+NQ K W+ K+ +I + ++F N+K D +KA
Sbjct: 1246 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKA 1300
Query: 525 RLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEEV 584
R VA+G Q T + A+ +S ++++N + Q+D+ S +L I EE+
Sbjct: 1301 RFVARGDIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 1360
Query: 585 YVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERLRFLLENEFVRGKVDTTLFCKTY 644
Y+ PP D + LKKS YGLKQ+ WYE ++ L + G + + +
Sbjct: 1361 YIRPPPHLGMN---DKLIRLKKSHYGLKQSGANWYETIKSYLIKQC--GMEEVRGWSCVF 1415
Query: 645 KDDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMMG------ELKY-FLGIQVD- 696
K+ + + ++VDD+I S + + K+ ++ +++ ++ E++Y LG+++
Sbjct: 1416 KNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKY 1475
Query: 697 QTPEATYIHQSKYTKELLKKFNMTESIIAKTLMHP----------TCILEKEDASGKV-- 744
Q + + E + K N+ + + L P +++++ KV
Sbjct: 1476 QRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHE 1535
Query: 745 CQKLYRGMICSFLYLTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLL 804
QKL G+ Y R D+L+ + A+ P L + +++++ T + L+
Sbjct: 1536 MQKLI-GLASYVGY--KFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLI 1592
Query: 805 YKKTS----EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEA 860
+ K + KL DA Y G++ KS GN L ++ S + S ST EA
Sbjct: 1593 WHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEA 1651
Query: 861 EY----ISIAICNT*MLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS-RAKYIE 915
E S+ + N + ++ +L I++ + D+ + IS+ K+ R ++
Sbjct: 1652 EIHAISESVPLLNN-LSYLIQELNKKPIIKG---LLTDSRSTISIIKSTNEEKFRNRFFG 1707
Query: 916 VKYHFIRDYVQKGYFF*SSLILTINSADIFTKPLAEDRFKFI 957
K +RD V + + N AD+ TKPL FK +
Sbjct: 1708 TKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLL 1749
Score = 84.7 bits (208), Expect = 1e-15
Identities = 84/356 (23%), Positives = 145/356 (40%), Gaps = 27/356 (7%)
Query: 83 HRRLGHASMRKIS*LCKLDLVRGL--PTLKFSS--DALCEACQKGKFTK---VSFKAKNV 135
HR L HA+ + I K + + + +SS D C C GK TK +
Sbjct: 599 HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 658
Query: 136 VSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFIS--RKDESHSVFSTF 193
++ P + LH D+FGPV Y + D+ +++ WV + R+D VF+T
Sbjct: 659 QNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTI 718
Query: 194 IVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQQNGVVERKNRTL 253
+ ++N+ ++ ++ D G + N + GI ++ + +GV ER NRTL
Sbjct: 719 LAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTL 778
Query: 254 QEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKKVKPNISYFHPFG 313
+ RT LQ + H W A+ S ++N ++ P K+ + +IS PFG
Sbjct: 779 LDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA-SPKSKKSARQHAGLAGLDISTLLPFG 837
Query: 314 CVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTD-AKTIEEYIHVRFDDK---- 368
+N + K + L S+ S G+ IY KT++ +V K
Sbjct: 838 -QPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKESRL 896
Query: 369 ---------LDSDQSKLVEKFVDM--SINVSDKGKAPEEAEPEEDSPEEVGPSDPQ 413
D D ++L + S + + E++ + S E+ P P+
Sbjct: 897 DQFNYDALTFDEDLNRLTASYQSFIASNEIQESNDLNIESDHDFQSDIELHPEQPR 952
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 99.0 bits (245), Expect = 5e-20
Identities = 115/484 (23%), Positives = 205/484 (41%), Gaps = 40/484 (8%)
Query: 502 IIGTKWVFRNKLNEKGDVVRNKARLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVN 561
I+ T +F K N KAR+V +G Q Y+ I++ + + N
Sbjct: 1322 IVPTNTIFTKKRNGI-----YKARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLMIANN 1375
Query: 562 HNIILHQMDVKSVFLNGYISEEVYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYER 621
N+ + +D+ FL + EE+Y+ P D + V L K+LYGLKQ+P+ W +
Sbjct: 1376 RNMFMKTLDINHAFLYAKLEEEIYIPHP---HDRRC---VVKLNKALYGLKQSPKEWNDH 1429
Query: 622 LRFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEM 681
LR L ++ T +T +D L++ +YVDD + ++N EF +++ FE+
Sbjct: 1430 LRQYLNGIGLKDNSYTPGLYQT-EDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFEL 1488
Query: 682 SMMGEL------KYFLGIQVDQTPEATYIHQS--KYTKELLKKFNMTESIIAKTLMHPTC 733
+ G L LG+ + I + + + KK+N I K+ + P
Sbjct: 1489 KITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSI-PHM 1547
Query: 734 ILEKEDASGKVCQ---KLYRGMICSFLYLTAS--------RPDILFSEHLCARFQSDPRE 782
K D V Q + +R + L R DI F+ AR + P E
Sbjct: 1548 STYKIDPKKDVLQMSEEEFRQGVLKLQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHE 1607
Query: 783 THLTVVKRILRYLKGTTNLGLLYKK--TSEYKLSGYCDADYAGDRTERKSTSGNCQFLGS 840
++ +I++YL ++G+ Y + + K+ DA G + +S G + G
Sbjct: 1608 RVFYMIYKIIQYLVRYKDIGIHYDRDCNKDKKVIAITDAS-VGSEYDAQSRIGVILWYGM 1666
Query: 841 NLVSWASKRQSTIALSTAEAEYISIAICNT*MLWMKHQLEDYQILESN-IPIYCDNTAAI 899
N+ + S + + +S+ EAE +I +K L++ ++N I + D+ AI
Sbjct: 1667 NIFNVYSNKSTNRCVSSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAI 1726
Query: 900 SLSKNPILHSRAKYIEVKYHFIRDYVQKGYFF*SSLILTINSADIFTKPLAEDRFK---F 956
+ K+ +K I++ +++ + N AD+ TKP++ FK
Sbjct: 1727 QGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDFKRFIQ 1786
Query: 957 ILKN 960
+LKN
Sbjct: 1787 VLKN 1790
Score = 78.6 bits (192), Expect = 8e-14
Identities = 62/239 (25%), Positives = 111/239 (45%), Gaps = 9/239 (3%)
Query: 83 HRRLGHASMRKIS*LCKLD-LVRGLPTLKFSSDALCEACQKGKFTKVSF---KAKNVVST 138
H+R+GH +++I K + L +K ++ C+ C+ K TK + N +
Sbjct: 562 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 621
Query: 139 SRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRW--TWVKFISRKDESHSVFSTFIVQ 196
P +D+FGPV + + KRY +++VD+ +R+ T F + + I
Sbjct: 622 HEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQY 681
Query: 197 VQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQQNGVVERKNRTLQEM 256
V+ + ++ + SD G F ND+ E F S GI + + + NG ER RT+
Sbjct: 682 VETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITD 741
Query: 257 SRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKK--VKPNISYFHPFG 313
+ T+L++ ++ FW AV ++ I+N + + K P + + V + F PFG
Sbjct: 742 ATTLLRQSNLRVKFWEYAVTSATNIRNYLEHKS-TGKLPLKAISRQPVTVRLMSFLPFG 799
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 98.2 bits (243), Expect = 9e-20
Identities = 46/97 (47%), Positives = 66/97 (67%)
Query: 461 EPKSIDEALQDKDWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNEKGDVV 520
EPKS+ AL+D W AM+EEL+ S+N W +V P +I+G KWVF+ KL+ G +
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
Query: 521 RNKARLVAQGYRQQEGIDYTETFAPVARLEAIRLLIS 557
R KARLVA+G+ Q+EGI + ET++PV R IR +++
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 65.5 bits (158), Expect = 7e-10
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 757 LYLTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKTSEYKLSGY 816
+YLT +RPD+ F+ + ++F S R + V ++L Y+KGT GL Y TS+ +L +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 817 CDADYAGDRTERKSTSGNCQFL 838
D+D+A R+S +G C +
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLV 82
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 55.5 bits (132), Expect = 7e-07
Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 9/203 (4%)
Query: 108 TLKFSSDALCEACQKGKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVI 167
TL++ +D+ C C + +K A V RP ID F VK + G +Y +V
Sbjct: 877 TLQYVADS-CTVCAQVNASKAKIGAGVRVRGHRPGSHWEID-FTEVKP-GLYGYKYLLVF 933
Query: 168 VDDYSRWTWVKFISRKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDS 227
VD +S W V+ K E+ V S +++ + SD+G F + +S+ D
Sbjct: 934 VDTFSGW--VEAFPTKRETARVVSKKLLEEIFPRFGMPQVLGSDNGPAFTSQVSQSVADL 991
Query: 228 YGIAYDFSCPRTPQQNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISV 287
GI + C PQ +G VER NRT++E + + W + + Y + R +
Sbjct: 992 LGIDWKLHCAYRPQSSGQVERMNRTIKETLTKL--TLAAGTRDWVLLLPLALY-RARNTP 1048
Query: 288 RPILNKTPYELWKKVKPNISYFH 310
P TPYE+ P + FH
Sbjct: 1049 GP-HGLTPYEILYGAPPPLVNFH 1070
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 53.1 bits (126), Expect = 3e-06
Identities = 49/194 (25%), Positives = 79/194 (40%), Gaps = 16/194 (8%)
Query: 120 CQKGKFTKVSFKAKNVV----STSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWT 175
CQ+ T S KA + +P + ID GP+ G Y +V+VD + +T
Sbjct: 650 CQQCLITNASNKASGPILRPDRPQKPFDKFFIDYIGPLPPSQ--GYLYVLVVVDGMTGFT 707
Query: 176 WVKFISRKDESHSVFSTFIVQVQNENACRIMRV-RSDHGGVFENDKFESLFDSYGIAYDF 234
W+ S +V S ++ + I +V SD G F + F GI +F
Sbjct: 708 WLYPTKAPSTSATVKSLNVL-----TSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEF 762
Query: 235 SCPRTPQQNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKT 294
S P PQ VERKN ++ + +L + ++ + N S P+L T
Sbjct: 763 STPYHPQSGSKVERKNSDIKRLLTKLL--VGRPTKWYDLLPVVQLALNNTYS--PVLKYT 818
Query: 295 PYELWKKVKPNISY 308
P++L + N +
Sbjct: 819 PHQLLFGIDSNTPF 832
>M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710
(ORF120)
Length = 120
Score = 52.4 bits (124), Expect = 6e-06
Identities = 28/68 (41%), Positives = 37/68 (54%)
Query: 250 NRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYELWKKVKPNISYF 309
NRT+ E R+ML E + K F A+A NT+ +I N+ I P E+W + P SY
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 310 HPFGCVCY 317
FGCV Y
Sbjct: 62 RRFGCVAY 69
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 51.2 bits (121), Expect = 1e-05
Identities = 40/139 (28%), Positives = 66/139 (46%), Gaps = 4/139 (2%)
Query: 117 CEACQKGKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTW 176
C+AC + +K + K V RP ID F VK + G +Y +V VD +S W
Sbjct: 890 CKACAQVNASKSAVKQGTRVRGHRPGTHWEID-FTEVKP-GLYGYKYLLVFVDTFSGW-- 945
Query: 177 VKFISRKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSC 236
V+ K E+ V + +++ + +D+G F + +++ D G+ + C
Sbjct: 946 VEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHC 1005
Query: 237 PRTPQQNGVVERKNRTLQE 255
PQ +G VER NRT++E
Sbjct: 1006 AYRPQSSGQVERMNRTIKE 1024
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 51.2 bits (121), Expect = 1e-05
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Query: 117 CEACQKGKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTW 176
C+AC + +K + K V RP ID F VK + G +Y +V +D +S W
Sbjct: 890 CQACAQVNASKSAVKQGTRVRGHRPGTHWEID-FTEVKP-GLYGYKYLLVFIDTFSGW-- 945
Query: 177 VKFISRKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSC 236
V+ K E+ V + +++ + +D+G F + +++ D G+ + C
Sbjct: 946 VEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHC 1005
Query: 237 PRTPQQNGVVERKNRTLQE 255
PQ +G VER NRT++E
Sbjct: 1006 AYRPQSSGQVERMNRTIKE 1024
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 51.2 bits (121), Expect = 1e-05
Identities = 40/139 (28%), Positives = 66/139 (46%), Gaps = 4/139 (2%)
Query: 117 CEACQKGKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTW 176
C+AC + +K + K V RP ID F VK + G +Y +V VD +S W
Sbjct: 890 CKACAQVNASKSAVKQGTRVRGHRPGTHWEID-FTEVKP-GLYGYKYLLVFVDTFSGW-- 945
Query: 177 VKFISRKDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSC 236
V+ K E+ V + +++ + +D+G F + +++ D G+ + C
Sbjct: 946 VEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHC 1005
Query: 237 PRTPQQNGVVERKNRTLQE 255
PQ +G VER NRT++E
Sbjct: 1006 AYRPQSSGQVERMNRTIKE 1024
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,562,115
Number of Sequences: 164201
Number of extensions: 4815068
Number of successful extensions: 12561
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 12389
Number of HSP's gapped (non-prelim): 159
length of query: 967
length of database: 59,974,054
effective HSP length: 120
effective length of query: 847
effective length of database: 40,269,934
effective search space: 34108634098
effective search space used: 34108634098
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)
Lotus: description of TM0101.5