BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0101.13
         (385 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RPA2_METVA (P14247) DNA-directed RNA polymerase subunit A'' (EC ...    31  4.6
EC2_ARATH (Q42377) EC protein homolog 2                                31  4.6
METK_ARCFU (O30186) S-adenosylmethionine synthetase (EC 2.5.1.6)...    31  6.1

>RPA2_METVA (P14247) DNA-directed RNA polymerase subunit A'' (EC
           2.7.7.6)
          Length = 386

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 18/55 (32%), Positives = 30/55 (53%), Gaps = 2/55 (3%)

Query: 122 DVNNSTSPEFRKVFVRG--KCVNFSPAIINQTLERSVVEFVEEELSLDTVAEELT 174
           D     S     +++RG  K    S AI+++ +E + VE V E++S+D V E +T
Sbjct: 102 DARKEPSTPTMSIYLRGDYKYDRESAAIVSKNIESTTVESVSEDISVDLVNECIT 156


>EC2_ARATH (Q42377) EC protein homolog 2
          Length = 85

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 17/60 (28%), Positives = 24/60 (39%), Gaps = 2/60 (3%)

Query: 307 DICSCLYVCLRNSQCHC*T*GHFQGTSRDHQDCCC*ETKG--GCSHPNSQGGSWSRG*AC 364
           D C C   C     C C       G  ++H  C C E  G   C+ P +Q  + ++G  C
Sbjct: 15  DRCGCPSPCPGGESCRCKMMSEASGGDQEHNTCPCGEHCGCNPCNCPKTQTQTSAKGCTC 74


>METK_ARCFU (O30186) S-adenosylmethionine synthetase (EC 2.5.1.6)
           (Methionine adenosyltransferase) (AdoMet synthetase)
          Length = 399

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 18/78 (23%), Positives = 36/78 (46%)

Query: 98  RKTVMNIGKCYDKLVKEFIVNLSEDVNNSTSPEFRKVFVRGKCVNFSPAIINQTLERSVV 157
           +  + ++GK Y+ L  +    ++E+V        R +   GK +N   A+  Q + +S  
Sbjct: 305 KNPINHVGKIYNLLANQIAARIAEEVEGVEEVYVRILSQIGKPINEPKALSVQVIPKSGY 364

Query: 158 EFVEEELSLDTVAEELTA 175
           +  + E     +AEE+ A
Sbjct: 365 DISKLERPARDIAEEMIA 382


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.339    0.147    0.497 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,182,325
Number of Sequences: 164201
Number of extensions: 1648014
Number of successful extensions: 5929
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5928
Number of HSP's gapped (non-prelim): 3
length of query: 385
length of database: 59,974,054
effective HSP length: 112
effective length of query: 273
effective length of database: 41,583,542
effective search space: 11352306966
effective search space used: 11352306966
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 67 (30.4 bits)