BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0098c.1
(78 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ABF2_BACOV (Q59219) Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) ... 35 0.045
ABF2_BACSU (P94552) Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) ... 32 0.38
TRMA_PHOPR (Q6LLU2) tRNA (Uracil-5-)-methyltransferase (EC 2.1.1... 30 1.1
GO45_MOUSE (Q8R2X8) Golgin 45 (Basic leucine zipper nuclear fact... 28 3.3
GLP1_CAEEL (P13508) Glp-1 protein precursor 28 3.3
EGLC_RHIME (Q9Z3Q2) Endo-1,3-1,4-beta-glycanase eglC (EC 3.2.1.-... 28 4.2
MATK_SULSU (P36436) Maturase K (Intron maturase) 28 5.5
TETM_UREUR (P09757) Tetracycline resistance protein tetM 27 9.5
RA50_SULSO (Q97WH0) DNA double-strand break repair rad50 ATPase 27 9.5
CA00_HUMAN (Q9Y3A6) Protein CGI-100 precursor (UNQ397/PRO733) 27 9.5
>ABF2_BACOV (Q59219) Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)
(Arabinosidase 2)
Length = 514
Score = 34.7 bits (78), Expect = 0.045
Identities = 23/70 (32%), Positives = 39/70 (54%), Gaps = 3/70 (4%)
Query: 9 ESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQ-TPIEGASTDMKVEL 67
E+ I+IN +K K++ +LTA+ + D NSF +PN + P ++ MKV+L
Sbjct: 446 EAQEITINLGDTKAKKAIGE--ILTASKLTDYNSFEKPNIVKPAPFKEVKINKGTMKVKL 503
Query: 68 PPHSVTSFDL 77
P S+ + +L
Sbjct: 504 PAKSIVTLEL 513
>ABF2_BACSU (P94552) Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)
(Arabinosidase 2)
Length = 495
Score = 31.6 bits (70), Expect = 0.38
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 13 ISINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQ-TPIEGASTDMKVELPPHS 71
I + GL SG +LTA + N+F +P+ + P+ + +KV+LPP S
Sbjct: 429 IELRGLHKAADHSG---VILTAEKMNAHNTFDDPHHVKPESFRQYTLSKNKLKVKLPPMS 485
Query: 72 VTSFDL 77
V L
Sbjct: 486 VVLLTL 491
>TRMA_PHOPR (Q6LLU2) tRNA (Uracil-5-)-methyltransferase (EC
2.1.1.35) (tRNA(M-5-U54)-methyltransferase) (RUMT)
Length = 368
Score = 30.0 bits (66), Expect = 1.1
Identities = 19/53 (35%), Positives = 26/53 (48%), Gaps = 8/53 (15%)
Query: 9 ESFRISINGLKSKVKQSGSRKTVLTAANVMD--------ENSFSEPNKIVPQQ 53
E F ++I G K+K R V+ NV D ENSF++PN V Q+
Sbjct: 146 EGFNLNIIGRARKMKIVADRDYVIEKLNVFDQTLTYKQVENSFTQPNGEVAQK 198
>GO45_MOUSE (Q8R2X8) Golgin 45 (Basic leucine zipper nuclear
factor 1)
Length = 403
Score = 28.5 bits (62), Expect = 3.3
Identities = 14/29 (48%), Positives = 16/29 (54%)
Query: 44 SEPNKIVPQQTPIEGASTDMKVELPPHSV 72
S NK + TPI GA M+ E PP SV
Sbjct: 9 SSENKGILTSTPIRGAGDGMETEEPPKSV 37
>GLP1_CAEEL (P13508) Glp-1 protein precursor
Length = 1295
Score = 28.5 bits (62), Expect = 3.3
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 1 VVNFGSGSESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEP 46
+V G G++S R ++ +K++GSRKT +AA+ + N + P
Sbjct: 1177 IVKSGHGAKSGRQTVKN----IKRAGSRKTPTSAASSRETNHLTPP 1218
>EGLC_RHIME (Q9Z3Q2) Endo-1,3-1,4-beta-glycanase eglC (EC 3.2.1.-)
(Succinoglycan biosynthesis protein eglC)
Length = 465
Score = 28.1 bits (61), Expect = 4.2
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 1 VVNFGSGSESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEGAS 60
V FG G+ + I G S+ G+ VLT A D +F N I
Sbjct: 100 VEGFGFGNSASNIISGGSGSQTINGGAGNDVLTGAGGADTFAFKRGN----GSDLISDFG 155
Query: 61 TDMKVELPPHSVTSFD 76
+D V L + TSFD
Sbjct: 156 SDDVVRLEGYGFTSFD 171
>MATK_SULSU (P36436) Maturase K (Intron maturase)
Length = 506
Score = 27.7 bits (60), Expect = 5.5
Identities = 19/74 (25%), Positives = 35/74 (46%), Gaps = 3/74 (4%)
Query: 3 NFGSGSESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEGASTD 62
NFG ++S I + L + + G + +L +AN ++N F NK Q EG +
Sbjct: 45 NFGYDNKSSSIIVKRL---ITRMGQQNHLLISANYSNKNKFLGHNKNFDSQMISEGFAVI 101
Query: 63 MKVELPPHSVTSFD 76
+++ V+S +
Sbjct: 102 VEIPFSLRLVSSLE 115
>TETM_UREUR (P09757) Tetracycline resistance protein tetM
Length = 639
Score = 26.9 bits (58), Expect = 9.5
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 14 SINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEGASTDMKVELPPHSVT 73
SING K+ ++ S + V+ + NS K++PQ+ IE +++ + P
Sbjct: 297 SINGELCKIDRAYSGEIVILQNEFLKLNSVLGDTKLLPQRKRIENPHPLLQITVEPSKPE 356
Query: 74 SFDLL 78
++L
Sbjct: 357 QREML 361
>RA50_SULSO (Q97WH0) DNA double-strand break repair rad50 ATPase
Length = 864
Score = 26.9 bits (58), Expect = 9.5
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 15 INGLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEG 58
+N L+ KV+++ ++ L A E+ SE N+I+ + +EG
Sbjct: 380 VNSLEQKVEETRKKQLNLRAQLAKVESLISEKNEIINNISQVEG 423
>CA00_HUMAN (Q9Y3A6) Protein CGI-100 precursor (UNQ397/PRO733)
Length = 229
Score = 26.9 bits (58), Expect = 9.5
Identities = 12/28 (42%), Positives = 18/28 (63%)
Query: 14 SINGLKSKVKQSGSRKTVLTAANVMDEN 41
SIN +KS++ +SG +T+L A D N
Sbjct: 159 SINSIKSRLSKSGHIQTLLRAFEARDRN 186
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.308 0.126 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,005,556
Number of Sequences: 164201
Number of extensions: 244484
Number of successful extensions: 570
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 566
Number of HSP's gapped (non-prelim): 10
length of query: 78
length of database: 59,974,054
effective HSP length: 54
effective length of query: 24
effective length of database: 51,107,200
effective search space: 1226572800
effective search space used: 1226572800
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0098c.1