BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0098b.3
(287 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DMD_CAEEL (Q9TW65) Dystrophin-1 35 0.16
AMYH_YEAST (P08640) Glucoamylase S1/S2 precursor (EC 3.2.1.3) (G... 33 0.62
RA21_MOUSE (Q61550) Double-strand-break repair protein rad21 hom... 32 1.4
NCO6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in... 32 1.8
EP84_HCMVA (P17151) Early phosphoprotein P84 32 1.8
ASPM_SAIBB (P62296) Abnormal spindle-like microcephaly-associate... 32 1.8
NMZ1_RAT (P35439) Glutamate [NMDA] receptor subunit zeta 1 precu... 32 2.3
NMZ1_MOUSE (P35438) Glutamate [NMDA] receptor subunit zeta 1 pre... 32 2.3
NMZ1_HUMAN (Q05586) Glutamate [NMDA] receptor subunit zeta 1 pre... 32 2.3
WR36_ARATH (Q9CAR4) Probable WRKY transcription factor 36 (WRKY ... 31 4.0
ICEK_PSESX (O30611) Ice nucleation protein 31 4.0
EFG1_CANAL (P43064) Enhanced filamentous growth protein 31 4.0
B3G5_HUMAN (Q9Y2C3) Beta-1,3-galactosyltransferase 5 (EC 2.4.1.-... 31 4.0
AXN_DROME (Q9V407) Axin (Axis inhibition protein) (dAxin) (d-Axin) 31 4.0
ICEN_PSESY (P06620) Ice nucleation protein 30 5.2
DMT1_PIG (Q9TT01) Doublesex- and mab-3-related transcription fac... 30 5.2
NX2B_HUMAN (P58401) Neurexin 2-beta precursor (Neurexin II-beta) 30 6.8
FLO5_YEAST (P38894) Flocculation protein FLO5 precursor (Floccul... 30 6.8
EXPA_DROME (Q07436) Expanded protein 30 8.9
DDF1_MOUSE (Q9QWY8) 130-kDa phosphatidylinositol 4,5-biphosphate... 30 8.9
>DMD_CAEEL (Q9TW65) Dystrophin-1
Length = 3674
Score = 35.4 bits (80), Expect = 0.16
Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 214 KVSLDDVVRWSVPFLMVERTMVQGLTDREGKPEQEFIGRNKFVKEKVQEKSEDRIEVDIS 273
K+ LD+VVRW M E+ Q + +G ++ GR +++QE+ +D ++++++
Sbjct: 2181 KLELDEVVRWCE---MAEKEAAQNVNSLDGDGLEKLDGRLAQFTKELQERKDDMVQLEMA 2237
Query: 274 YSTIV 278
+ I+
Sbjct: 2238 KNMII 2242
>AMYH_YEAST (P08640) Glucoamylase S1/S2 precursor (EC 3.2.1.3)
(Glucan 1,4-alpha-glucosidase) (1,4-alpha-D-glucan
glucohydrolase)
Length = 1367
Score = 33.5 bits (75), Expect = 0.62
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 108 PTINDMASQVDKALLSSSSSSLSLSHPPPPPPSFTIATIVVVAIATGSITASNST-VVIT 166
PT + ++ A +SSS++ S++ P P S I + +I S T S ST +T
Sbjct: 840 PTPSSSTTESSSAPVSSSTTESSVAPVPTPSSSSNITSSAPSSIPFSSTTESFSTGTTVT 899
Query: 167 NTHCHHHPPLMPLFITEVTHTNIAPRKHVTS 197
+ + ++ T T I P K TS
Sbjct: 900 PSSSKYPGSQTETSVSSTTETTIVPTKTTTS 930
>RA21_MOUSE (Q61550) Double-strand-break repair protein rad21
homolog (Pokeweed agglutinin-binding protein 29) (PW29)
(SCC1 homolog)
Length = 635
Score = 32.3 bits (72), Expect = 1.4
Identities = 14/42 (33%), Positives = 27/42 (63%), Gaps = 1/42 (2%)
Query: 98 PHPLYDVLNKPTINDMASQVDKALLSSSSSSLSLSHPPPPPP 139
P P DV+++P I + S++ +++ +S +++ S PPPPP
Sbjct: 437 PQPQRDVIDEPIIEE-PSRLQDSVMEASRTTIEESAMPPPPP 477
>NCO6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in
breast cancer-3 protein) (Cancer-amplified
transcriptional coactivator ASC-2) (Activating signal
cointegrator-2) (ASC-2) (Peroxisome
proliferator-activated receptor-interacting protein) (PP
Length = 2063
Score = 32.0 bits (71), Expect = 1.8
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 87 TVIHLLEALAMPHPLYDVLNKPTINDMASQVDKALLSSSSSSLSLSHPP---PPPPSFTI 143
+VI L+ L+ + LN P N++ S + LS SS+++ S PP P S +I
Sbjct: 1529 SVIPTLQDLSSSKEPSNSLNLPHSNELCSSLVHPELSEVSSNVAPSIPPVMSRPVSSSSI 1588
Query: 144 AT-----IVVVAIATGSITASNSTVVITNTHCHHHPPLMPLFITEVTHTNIAPRKHVTSG 198
+T + V + + IT S +T TH L T VT N + V+ G
Sbjct: 1589 STPLPPNQITVFVTSNPITTSANTSAALPTHLQ-----SALMSTVVTMPNAGSKVMVSEG 1643
>EP84_HCMVA (P17151) Early phosphoprotein P84
Length = 684
Score = 32.0 bits (71), Expect = 1.8
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 96 AMPHPLYDVLNKP-TINDMASQVDKALLSSSSSSLSLSHPPPPPPS 140
A P P+ ++ KP +N + + A SSSSSS L PPPPPPS
Sbjct: 545 APPRPVCEI--KPYVVNPVVATAAAASNSSSSSSAPL--PPPPPPS 586
>ASPM_SAIBB (P62296) Abnormal spindle-like microcephaly-associated
protein homolog
Length = 3469
Score = 32.0 bits (71), Expect = 1.8
Identities = 32/145 (22%), Positives = 50/145 (34%), Gaps = 7/145 (4%)
Query: 128 SLSLSHPPPPPPSFTIATIVVVAIATGSITASNSTVVITN-------THCHHHPPLMPLF 180
S S S+ PS T A++ + GS+ +N V +T H P
Sbjct: 547 SKSKSYKNEITPSLTTASVARKRKSDGSMGDANERVAVTEHTEVQEIKRIHFSPSEPKTA 606
Query: 181 ITEVTHTNIAPRKHVTSGADKERLVRGTEAGVPKVSLDDVVRWSVPFLMVERTMVQGLTD 240
+ T I P S +K L + TE P + + T ++ L
Sbjct: 607 TVKKTKNVITPISKCVSNREKLSLKKKTEFKTPIFKTSKRTKPIIAVAQSNLTFIKSLKT 666
Query: 241 REGKPEQEFIGRNKFVKEKVQEKSE 265
+ F +N F E+ +EK E
Sbjct: 667 DIPRHPMPFAAKNMFYDERWKEKQE 691
>NMZ1_RAT (P35439) Glutamate [NMDA] receptor subunit zeta 1
precursor (N-methyl-D-aspartate receptor subunit NR1)
(NMD-R1) (N-methyl-D-aspartate receptor)
Length = 938
Score = 31.6 bits (70), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 104 VLNKPTINDMASQVDKALLSSSSSSLSLSHPPPPPPSFT 142
V +KP MA V + L+SS ++ +SHPP P FT
Sbjct: 65 VTHKPNAIQMALSVCEDLISSQVYAILVSHPPTPNDHFT 103
>NMZ1_MOUSE (P35438) Glutamate [NMDA] receptor subunit zeta 1
precursor (N-methyl-D-aspartate receptor subunit NR1)
Length = 938
Score = 31.6 bits (70), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 104 VLNKPTINDMASQVDKALLSSSSSSLSLSHPPPPPPSFT 142
V +KP MA V + L+SS ++ +SHPP P FT
Sbjct: 65 VTHKPNAIQMALSVCEDLISSQVYAILVSHPPTPNDHFT 103
>NMZ1_HUMAN (Q05586) Glutamate [NMDA] receptor subunit zeta 1
precursor (N-methyl-D-aspartate receptor subunit NR1)
Length = 938
Score = 31.6 bits (70), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 104 VLNKPTINDMASQVDKALLSSSSSSLSLSHPPPPPPSFT 142
V +KP MA V + L+SS ++ +SHPP P FT
Sbjct: 65 VTHKPNAIQMALSVCEDLISSQVYAILVSHPPTPNDHFT 103
>WR36_ARATH (Q9CAR4) Probable WRKY transcription factor 36 (WRKY
DNA-binding protein 36)
Length = 387
Score = 30.8 bits (68), Expect = 4.0
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 122 LSSSSSSLSLSHPPPPPPS 140
LSSSS SL+ S P PPPPS
Sbjct: 335 LSSSSFSLNFSSPDPPPPS 353
>ICEK_PSESX (O30611) Ice nucleation protein
Length = 1148
Score = 30.8 bits (68), Expect = 4.0
Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 26/152 (17%)
Query: 70 LDINLGYRWVICESDSTTVIHLLEALAMPHPLYDVLNKPTIND--------MASQVDKAL 121
L ++ RW++CE +I L E + P +V++ + D A Q D A
Sbjct: 58 LSVHADARWIVCEVAVADIISLEEPGMVKFPRAEVVH---VGDRISASHFISARQADPAS 114
Query: 122 LSSSSSSLSLSHP----PPPPPSFTIATIVVVAIATGSI--TASNSTVVITNTHCHHHPP 175
S+S+S+ +L+ P P P+ T+ V A + AS S P
Sbjct: 115 TSTSTSTSTLTPMPTAIPTPMPAVASVTLPVAEQARHEVFDVASVSAAA---------AP 165
Query: 176 LMPLFITEVTHTNIAPRKHVTSGADKERLVRG 207
+ L +T + A SG + RL+ G
Sbjct: 166 VNTLPVTTPQNLQTATYGSTLSGDNHSRLIAG 197
>EFG1_CANAL (P43064) Enhanced filamentous growth protein
Length = 552
Score = 30.8 bits (68), Expect = 4.0
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 120 ALLSSSSSSLSLSHPPPPPPSFTIATIVVVAIATGSITASNSTVVITN 167
A ++++++ S S PPPPPP AT + S + + +++ T+
Sbjct: 318 ATAAAAATATSASAPPPPPPPVAAATTTAATAISKSSSGNGNSISATS 365
>B3G5_HUMAN (Q9Y2C3) Beta-1,3-galactosyltransferase 5 (EC 2.4.1.-)
(Beta-1,3-GalTase 5) (Beta3Gal-T5) (b3Gal-T5)
(UDP-galactose:beta-N-acetylglucosamine
beta-1,3-galactosyltransferase 5) (UDP-Gal:beta-GlcNAc
beta-1,3-galactosyltransferase 5) (Beta-3-Gx-T5
Length = 310
Score = 30.8 bits (68), Expect = 4.0
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 165 ITNTHCHHHPPLMPLFITEVTHTNIAPRKHVTSGADKERLVRGTE 209
+ +T C PP + L +T +H +A R + KER+V+G +
Sbjct: 47 LPDTDCRQTPPFLVLLVTS-SHKQLAERMAIRQTWGKERMVKGKQ 90
>AXN_DROME (Q9V407) Axin (Axis inhibition protein) (dAxin) (d-Axin)
Length = 745
Score = 30.8 bits (68), Expect = 4.0
Identities = 20/36 (55%), Positives = 22/36 (60%), Gaps = 2/36 (5%)
Query: 115 SQVDKALLSSSSS--SLSLSHPPPPPPSFTIATIVV 148
SQ A SSSSS S+SL H PPP P+ TIVV
Sbjct: 634 SQQPLASFSSSSSGGSISLPHQPPPLPAKPPETIVV 669
>ICEN_PSESY (P06620) Ice nucleation protein
Length = 1200
Score = 30.4 bits (67), Expect = 5.2
Identities = 35/148 (23%), Positives = 57/148 (37%), Gaps = 22/148 (14%)
Query: 70 LDINLGYRWVICESDSTTVIHLLEALAMPHPLYDVLNKPTIND--------MASQVDKAL 121
L ++ RW++CE +I L E + P +V++ + D A Q D A
Sbjct: 58 LSVHADARWIVCEVAVADIISLEEPGMVKFPRAEVVH---VGDRISASHFISARQADPAS 114
Query: 122 LSSSSSSLSLSHPPPPPPSFTIATIVVVAIATGSI--TASNSTVVITNTHCHHHPPLMPL 179
S+S+ + + P P P+ T+ V A + AS S P+ L
Sbjct: 115 TSTSTLTPMPTAIPTPMPAVASVTLPVAEQARHEVFDVASVSAAA---------APVNTL 165
Query: 180 FITEVTHTNIAPRKHVTSGADKERLVRG 207
+T + A SG + RL+ G
Sbjct: 166 PVTTPQNVQTATYGSTLSGDNHSRLIAG 193
>DMT1_PIG (Q9TT01) Doublesex- and mab-3-related transcription factor
1
Length = 373
Score = 30.4 bits (67), Expect = 5.2
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 6/57 (10%)
Query: 121 LLSSSSSSLSLSHPPPPPPSFTIATIVVVAIATGSITASNSTVVITNTHCHHHPPLM 177
L++ SSSS S PPPPPP+ A+ A G + + V + H + P L+
Sbjct: 153 LMTESSSS---SQPPPPPPA---ASTPTTAAPEGRMVIQDIPAVTSRGHVENAPDLV 203
>NX2B_HUMAN (P58401) Neurexin 2-beta precursor (Neurexin II-beta)
Length = 666
Score = 30.0 bits (66), Expect = 6.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 134 PPPPPPSFTIATIVVVAIATGSITASNSTVVITNTHCHH 172
PPPPPP + ++++ + + A S+ + T H HH
Sbjct: 27 PPPPPPLLPLLPLLLLLLLGAAEGARVSSSLSTTHHVHH 65
>FLO5_YEAST (P38894) Flocculation protein FLO5 precursor (Flocculin
5)
Length = 1075
Score = 30.0 bits (66), Expect = 6.8
Identities = 24/76 (31%), Positives = 33/76 (42%), Gaps = 12/76 (15%)
Query: 109 TINDMASQVDKALLSSSSSSLSLSHPPPPPPSFTIATIVVVAIATGSITASN-------- 160
T S+ A SSSSSS+S S P P + + + V + TG TAS+
Sbjct: 719 TSGSSESKTSSASSSSSSSSIS-SESPKSPTNSSSSLPPVTSATTGQETASSLPPATTTK 777
Query: 161 ---STVVITNTHCHHH 173
T ++T T C H
Sbjct: 778 TSEQTTLVTVTSCESH 793
>EXPA_DROME (Q07436) Expanded protein
Length = 1429
Score = 29.6 bits (65), Expect = 8.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 121 LLSSSSSSLSLSHPPPPPPSFTIATIVVVAIATGSITASN 160
L S S +SL S+ PPPPP A + A A ++S+
Sbjct: 1135 LYSPSMASLCSSYEPPPPPPLHPAALAAAAAAGAGSSSSS 1174
>DDF1_MOUSE (Q9QWY8) 130-kDa phosphatidylinositol
4,5-biphosphate-dependent ARF1 GTPase-activating protein
(PIP2-dependent ARF1 GAP) (ADP-ribosylation
factor-directed GTPase-activating protein 1) (ARF
GTPase-activating protein 1) (Development and differen
Length = 1147
Score = 29.6 bits (65), Expect = 8.9
Identities = 12/17 (70%), Positives = 13/17 (75%)
Query: 123 SSSSSSLSLSHPPPPPP 139
SS SS+LS PPPPPP
Sbjct: 831 SSGSSTLSKKRPPPPPP 847
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,554,000
Number of Sequences: 164201
Number of extensions: 1394136
Number of successful extensions: 7310
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 7240
Number of HSP's gapped (non-prelim): 64
length of query: 287
length of database: 59,974,054
effective HSP length: 109
effective length of query: 178
effective length of database: 42,076,145
effective search space: 7489553810
effective search space used: 7489553810
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0098b.3