BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0096b.4
(1566 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 489 e-137
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 487 e-136
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 487 e-136
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 357 1e-97
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 347 1e-94
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 337 1e-91
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 333 3e-90
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 300 2e-80
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 287 2e-76
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 201 2e-50
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 200 2e-50
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 199 4e-50
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 197 2e-49
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 192 6e-48
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 184 2e-45
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 183 3e-45
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 165 8e-40
POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat pr... 154 2e-36
M860_ARATH (P92523) Hypothetical mitochondrial protein AtMg00860... 152 5e-36
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 149 6e-35
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 489 bits (1259), Expect = e-137
Identities = 302/924 (32%), Positives = 489/924 (52%), Gaps = 40/924 (4%)
Query: 560 LGKEKVQLEKDNKGVTGVQQAEL-DMILERHSVVFQAPKGLPPKRNK--QHAITLKEGEG 616
+ K L + NK V++ EL D+ E + + PK K + + L +
Sbjct: 352 ISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENY 411
Query: 617 PVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRAL 676
+ +R Y P + + +++ + L+ G+IR S + + PV+ V KK+ + RM VDY+ L
Sbjct: 412 RLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPL 471
Query: 677 NKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEF 736
NK P+ +P+P+IE+LL ++ G+ F+KLDLKS YH +RV++ D HK AFR G +E+
Sbjct: 472 NKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEY 531
Query: 737 LVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILRE 796
LVMP+G+ AP+ FQ +N I V+ + DDIL++SK H++H+++VL L+
Sbjct: 532 LVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKN 591
Query: 797 QGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGY 856
L+ N+ KC F + +V+++G+ IS +G ++ V W PKN K +R FLG Y
Sbjct: 592 ANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNY 651
Query: 857 YRKFIRDYGKIAKPLTELTKKN-GFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIE 915
RKFI ++ PL L KK+ ++W+ +A E +K+ L + PVL DFSK+ +E
Sbjct: 652 LRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLE 711
Query: 916 CDASGVGVGAILMQEK-----RPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLL 970
DAS V VGA+L Q+ P+ Y+S + L+ S +KE++A+ +++HWR YL
Sbjct: 712 TDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLE 771
Query: 971 G--RHFKVTTDQRSL--KELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSR 1026
FK+ TD R+L + + + W L F+FEI+Y+PG N ADALSR
Sbjct: 772 STIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831
Query: 1027 VNETLELRQMGSHVDWLG-------GKDLKEEV----SKDEELQRIIKSVHEKKDSSLGY 1075
+ + E S + + D K +V + D +L ++ + ++ + ++
Sbjct: 832 IVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENI-- 889
Query: 1076 TYENGILL-YEGRLVLPRESPLIHTMLTEFHTTPQGGHSGFYRTYRRLAANVYWRGMKSA 1134
++G+L+ + +++LP ++ L T++ ++H + H G + W+G++
Sbjct: 890 QLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQ 949
Query: 1135 VQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWEDLSMDFITGLPKSKGFEAILVVVD 1194
+Q++V+ C CQ K P G LQP+P ER WE LSMDFIT LP+S G+ A+ VVVD
Sbjct: 950 IQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVD 1009
Query: 1195 RLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGT 1254
R SK A +P TA+ A +F + ++ G P I++D D IF S W++
Sbjct: 1010 RFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNF 1069
Query: 1255 KLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVT 1314
+K S Y P++DGQ+E N+ +E LRC + P TWV I + YN H++T +T
Sbjct: 1070 VMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMT 1129
Query: 1315 PFEVVYGRPPPTITRWIQGETRVEAVQKELLERDEALRQLRLQLARAQDRMKQFADRKRS 1374
PFE+V+ R P ++ ++ + + + E + + ++ L +MK++ D K
Sbjct: 1130 PFEIVH-RYSPALSP-LELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ 1187
Query: 1375 D-RSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKLPPGSK- 1432
+ F G+ V VK R K+ KLA + GP+ V+ + G Y+L LP K
Sbjct: 1188 EIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKH 1243
Query: 1433 -VHPVFHVSLLKKAVGTYHEGEEL 1455
FHVS L+K Y EL
Sbjct: 1244 MFSSTFHVSHLEK----YRHNSEL 1263
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 487 bits (1253), Expect = e-136
Identities = 301/924 (32%), Positives = 490/924 (52%), Gaps = 40/924 (4%)
Query: 560 LGKEKVQLEKDNKGVTGVQQAEL-DMILERHSVVFQAPKGLPPKRNK--QHAITLKEGEG 616
+ K L + NK V++ EL D+ E + + PK K + + L +
Sbjct: 352 ISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENY 411
Query: 617 PVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRAL 676
+ +R Y P + + +++ + L+ G+IR S + + PV+ V KK+ + RM VDY+ L
Sbjct: 412 RLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPL 471
Query: 677 NKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEF 736
NK P+ +P+P+IE+LL ++ G+ F+KLDLKS YH +RV++ D HK AFR G +E+
Sbjct: 472 NKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEY 531
Query: 737 LVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILRE 796
LVMP+G+ AP+ FQ +N I + V+ + D+IL++SK H++H+++VL L+
Sbjct: 532 LVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKN 591
Query: 797 QGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGY 856
L+ N+ KC F + +V+++G+ IS +G ++ V W PKN K +R FLG Y
Sbjct: 592 ANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNY 651
Query: 857 YRKFIRDYGKIAKPLTELTKKN-GFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIE 915
RKFI ++ PL L KK+ ++W+ +A E +K+ L + PVL DFSK+ +E
Sbjct: 652 LRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLE 711
Query: 916 CDASGVGVGAILMQEK-----RPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLL 970
DAS V VGA+L Q+ P+ Y+S + L+ S +KE++A+ +++HWR YL
Sbjct: 712 TDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLE 771
Query: 971 G--RHFKVTTDQRSL--KELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSR 1026
FK+ TD R+L + + + W L F+FEI+Y+PG N ADALSR
Sbjct: 772 STIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831
Query: 1027 VNETLELRQMGSHVDWLG-------GKDLKEEV----SKDEELQRIIKSVHEKKDSSLGY 1075
+ + E S + + D K +V + D +L ++ + ++ + ++
Sbjct: 832 IVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENI-- 889
Query: 1076 TYENGILL-YEGRLVLPRESPLIHTMLTEFHTTPQGGHSGFYRTYRRLAANVYWRGMKSA 1134
++G+L+ + +++LP ++ L T++ ++H + H G + W+G++
Sbjct: 890 QLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQ 949
Query: 1135 VQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWEDLSMDFITGLPKSKGFEAILVVVD 1194
+Q++V+ C CQ K P G LQP+P ER WE LSMDFIT LP+S G+ A+ VVVD
Sbjct: 950 IQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVD 1009
Query: 1195 RLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGT 1254
R SK A +P TA+ A +F + ++ G P I++D D IF S W++
Sbjct: 1010 RFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNF 1069
Query: 1255 KLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVT 1314
+K S Y P++DGQ+E N+ +E LRC + P TWV I + YN H++T +T
Sbjct: 1070 VMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMT 1129
Query: 1315 PFEVVYGRPPPTITRWIQGETRVEAVQKELLERDEALRQLRLQLARAQDRMKQFADRKRS 1374
PFE+V+ R P ++ ++ + + + E + + ++ L +MK++ D K
Sbjct: 1130 PFEIVH-RYSPALSP-LELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ 1187
Query: 1375 D-RSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKLPPGSK- 1432
+ F G+ V VK R K+ KLA + GP+ V+ + G Y+L LP K
Sbjct: 1188 EIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKH 1243
Query: 1433 -VHPVFHVSLLKKAVGTYHEGEEL 1455
FHVS L+K Y EL
Sbjct: 1244 MFSSTFHVSHLEK----YRHNSEL 1263
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 487 bits (1253), Expect = e-136
Identities = 301/924 (32%), Positives = 490/924 (52%), Gaps = 40/924 (4%)
Query: 560 LGKEKVQLEKDNKGVTGVQQAEL-DMILERHSVVFQAPKGLPPKRNK--QHAITLKEGEG 616
+ K L + NK V++ EL D+ E + + PK K + + L +
Sbjct: 352 ISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENY 411
Query: 617 PVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRAL 676
+ +R Y P + + +++ + L+ G+IR S + + PV+ V KK+ + RM VDY+ L
Sbjct: 412 RLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPL 471
Query: 677 NKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEF 736
NK P+ +P+P+IE+LL ++ G+ F+KLDLKS YH +RV++ D HK AFR G +E+
Sbjct: 472 NKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEY 531
Query: 737 LVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILRE 796
LVMP+G+ AP+ FQ +N I + V+ + D+IL++SK H++H+++VL L+
Sbjct: 532 LVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKN 591
Query: 797 QGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGY 856
L+ N+ KC F + +V+++G+ IS +G ++ V W PKN K +R FLG Y
Sbjct: 592 ANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNY 651
Query: 857 YRKFIRDYGKIAKPLTELTKKN-GFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIE 915
RKFI ++ PL L KK+ ++W+ +A E +K+ L + PVL DFSK+ +E
Sbjct: 652 LRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLE 711
Query: 916 CDASGVGVGAILMQEK-----RPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLL 970
DAS V VGA+L Q+ P+ Y+S + L+ S +KE++A+ +++HWR YL
Sbjct: 712 TDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLE 771
Query: 971 G--RHFKVTTDQRSL--KELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSR 1026
FK+ TD R+L + + + W L F+FEI+Y+PG N ADALSR
Sbjct: 772 STIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831
Query: 1027 VNETLELRQMGSHVDWLG-------GKDLKEEV----SKDEELQRIIKSVHEKKDSSLGY 1075
+ + E S + + D K +V + D +L ++ + ++ + ++
Sbjct: 832 IVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENI-- 889
Query: 1076 TYENGILL-YEGRLVLPRESPLIHTMLTEFHTTPQGGHSGFYRTYRRLAANVYWRGMKSA 1134
++G+L+ + +++LP ++ L T++ ++H + H G + W+G++
Sbjct: 890 QLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQ 949
Query: 1135 VQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWEDLSMDFITGLPKSKGFEAILVVVD 1194
+Q++V+ C CQ K P G LQP+P ER WE LSMDFIT LP+S G+ A+ VVVD
Sbjct: 950 IQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVD 1009
Query: 1195 RLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGT 1254
R SK A +P TA+ A +F + ++ G P I++D D IF S W++
Sbjct: 1010 RFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNF 1069
Query: 1255 KLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVT 1314
+K S Y P++DGQ+E N+ +E LRC + P TWV I + YN H++T +T
Sbjct: 1070 VMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMT 1129
Query: 1315 PFEVVYGRPPPTITRWIQGETRVEAVQKELLERDEALRQLRLQLARAQDRMKQFADRKRS 1374
PFE+V+ R P ++ ++ + + + E + + ++ L +MK++ D K
Sbjct: 1130 PFEIVH-RYSPALSP-LELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ 1187
Query: 1375 D-RSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKLPPGSK- 1432
+ F G+ V VK R K+ KLA + GP+ V+ + G Y+L LP K
Sbjct: 1188 EIEEFQPGDLVMVK----RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKH 1243
Query: 1433 -VHPVFHVSLLKKAVGTYHEGEEL 1455
FHVS L+K Y EL
Sbjct: 1244 MFSSTFHVSHLEK----YRHNSEL 1263
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 357 bits (916), Expect = 1e-97
Identities = 278/956 (29%), Positives = 463/956 (48%), Gaps = 101/956 (10%)
Query: 498 NVDMVLGIEWLRTLGDMIVNWDKKTMS-FWSGHKWVTLQGHEEQ--------EGLLVALQ 548
N DM++G + L+ ++N+ T++ F +K +T + Q E + + Q
Sbjct: 89 NYDMLIGRKLLKN-AQSVINYKNDTVTLFDQTYKLITSESERNQNLYIQRTPESIASSDQ 147
Query: 549 TMISRAGFSGYLGKEKVQLEKDNKGVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQHA 608
I + FS + +L+ N+ T + L+ ++ ++ + L +H
Sbjct: 148 ESIKKLDFSQF------RLDHLNQEETFKLKGLLNKF---RNLEYKEGEKLTFTNTIKHV 198
Query: 609 ITLKEGEGPVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKD---- 664
+ P+ + Y + E+ENQV+E+L G+IR S S ++SP +V KK
Sbjct: 199 LNTTHNS-PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASG 257
Query: 665 -HSWRMCVDYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVH 723
+ +R+ +DYR LN+ TIPD++PIP ++E+L +L +YF+ +DL G+HQ+ + EE +
Sbjct: 258 ANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESIS 317
Query: 724 KTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSH 783
KTAF T GHYE+L MPFGL NAP+TFQ MN+I R LL K LV+ DDI+++S H
Sbjct: 318 KTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEH 377
Query: 784 LEHLQEVLGILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKN 843
L +Q V L + L KC F +++ +LGH+++ G++ +P KV+++ S+P P
Sbjct: 378 LNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTK 437
Query: 844 VKGVRGFLGLTGYYRKFIRDYGKIAKPLTELTKKNGFEWSEKAQ--EAFETLKKKLTTSP 901
K +R FLGLTGYYRKFI +Y IAKP+T KK ++K + EAFE LK + P
Sbjct: 438 DKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDP 497
Query: 902 VLALPDFSKEFTIECDASGVGVGAILMQEKRPIAYFSKALGVRNLSKSAYEKELMALGLA 961
+L LPDF K+F + DAS + +GA+L Q PI++ S+ L L+ SA EKEL+A+ A
Sbjct: 498 ILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWA 557
Query: 962 IQHWRPYLLGRHFKVTTDQRSLKELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGA 1021
+ +R YLLGR F + +D + L+ L K + + W +L + F+I Y GK N A
Sbjct: 558 TKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVA 617
Query: 1022 DALSRV----NETLELRQMGSHVD-----WLGGKD----------LKEEVSKDEE----- 1057
DALSR+ N E Q + D L K +K + +K E
Sbjct: 618 DALSRIKIEENHHSEATQHSAEEDNSNLIHLTEKPINYFKKQIIFIKSDKNKVEHSKIFG 677
Query: 1058 -----LQRIIKSVHEKKDSSLGYTYENGILLY-----EGRLVLPRESPLIHTMLT----- 1102
+Q + ++ + K L + I +Y + +V +++T T
Sbjct: 678 NSITTIQYDVMTLEKAKQILLDHFIHRNITIYIESDVDFEIVQRAHIEIVNTTYTKVIRS 737
Query: 1103 -----------EFHTTPQGGHS-----GFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQ 1146
EF H G + + N ++ + +Q+ + +C++C
Sbjct: 738 LFLLKNVGSYAEFKEIILQSHEKLLHPGIQKMTKLFKENHFFPNSQLLIQNIINECNICN 797
Query: 1147 RQKYLASSPGGLLQPLPIPERIWEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLK 1206
K + L+ P PE E F+ + S+G + + +D SK+A +K
Sbjct: 798 LAKTEHRNTKMPLKITPNPEHCRE----KFVVDIYSSEG-KHYISCIDIYSKFATLEQIK 852
Query: 1207 HPYTAKSVAEVFG--KEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHP 1264
K E I G P + +DRD F S + + + +L+++TA +
Sbjct: 853 ----TKDWIECRNALMRIFNQLGKPKLLKADRDGAFSSLALKRWLEEEEVELQLNTAKNG 908
Query: 1265 ESDGQSEVVNRCLETYLRCF-IADQPKTWVIWIPWAEYWYNTCF-HASTGVTPFEV-VYG 1321
+D E +++ + +R +D + + I Y YN H +TG P ++ +Y
Sbjct: 909 VAD--VERLHKTINEKIRIINSSDDEEVKLSKIETILYTYNQKIKHDTTGQRPAQIFLYA 966
Query: 1322 RPPPTITRWIQGETRVEAVQKELLE--RDEALRQLRLQLARAQDRMKQFADRKRSD 1375
P T+ I+ E ++E + ++ E D R+ LQ + ++ K + +++D
Sbjct: 967 GHPILDTQKIK-EKKIEKINEDRREFNIDTNYRKGPLQKGKLENPFKPTKNVEQTD 1021
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 347 bits (891), Expect = 1e-94
Identities = 200/542 (36%), Positives = 314/542 (57%), Gaps = 18/542 (3%)
Query: 498 NVDMVLGIEWLRTLGDMIVNWDKKTMSFWSGHKWVT-LQGHEEQ--EGLLVALQTMISRA 554
N D++LG + L I D++ + + +K + + HE+ + + + TM+ +
Sbjct: 89 NYDLLLGRKLLAEAKATISYRDQEVTLYNNKYKLIEGIATHEQSHFQNVNMIPDTMLRQP 148
Query: 555 G-FSGYLGKEKVQLEKDNKGVTGVQQAELDMILER-HSVVFQAPKGLPPKRNKQHAITLK 612
S L + +LE N ++ L +L++ H + + L +H I K
Sbjct: 149 NKISPILESDLYRLEHLNNE----EKQRLCALLQKYHDIQYHEGDKLTFTNQTKHTINTK 204
Query: 613 EGEGPVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHS-----W 667
P+ + Y YP + E+E+Q++++L G+IR S S ++SP+ +V KK + +
Sbjct: 205 HNL-PLYSK-YSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKF 262
Query: 668 RMCVDYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAF 727
R+ +DYR LN+ T+ D+ PIP ++E+L +L YF+ +DL G+HQ+ + E V KTAF
Sbjct: 263 RIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAF 322
Query: 728 RTHEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHL 787
T GHYE+L MPFGL NAP+TFQ MNDI R LL K LV+ DDI+V+S HL+ L
Sbjct: 323 STKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSL 382
Query: 788 QEVLGILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGV 847
V L + L KC F +++ +LGH+++ G++ +P K+E++ +P P K +
Sbjct: 383 GLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEI 442
Query: 848 RGFLGLTGYYRKFIRDYGKIAKPLTELTKKNG--FEWSEKAQEAFETLKKKLTTSPVLAL 905
+ FLGLTGYYRKFI ++ IAKP+T+ KKN + + AF+ LK ++ P+L +
Sbjct: 443 KAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKV 502
Query: 906 PDFSKEFTIECDASGVGVGAILMQEKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHW 965
PDF+K+FT+ DAS V +GA+L Q+ P++Y S+ L ++ S EKEL+A+ A + +
Sbjct: 503 PDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTF 562
Query: 966 RPYLLGRHFKVTTDQRSLKELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALS 1025
R YLLGRHF++++D + L L + K + W KL FDF+I Y GK N ADALS
Sbjct: 563 RHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALS 622
Query: 1026 RV 1027
R+
Sbjct: 623 RI 624
Score = 37.7 bits (86), Expect = 0.25
Identities = 51/268 (19%), Positives = 107/268 (39%), Gaps = 13/268 (4%)
Query: 1112 HSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWED 1171
H G +T + Y+ + +Q+ + +C +C K + + P PE E
Sbjct: 763 HPGIQKTTKLFGETYYFPNSQLLIQNIINECSICNLAKTEHRNTDMPTKTTPKPEHCREK 822
Query: 1172 LSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSS 1231
+D + S+G + + +D SK+A +K + + I G P
Sbjct: 823 FMIDIYS----SEG-KHYVSCIDIYSKFATLEEIKTKDWIECKNALM--RIFNQLGKPKL 875
Query: 1232 IVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCF-IADQPK 1290
+ +DRD F S + + + +L+++T +D E +++ + +R +D +
Sbjct: 876 LKADRDGAFSSLALKRWLESEEVELQLNTTKTGVAD--IERLHKTINEKIRIIKTSDDEE 933
Query: 1291 TWVIWIPWAEYWYN-TCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLER-- 1347
T + + YN H +TG TP + P + E ++ + + +E
Sbjct: 934 TKLSKMETVLNIYNHKTKHDTTGQTPAHIFLYAGQPILDTQQNKENKINKINNDRVEYEV 993
Query: 1348 DEALRQLRLQLARAQDRMKQFADRKRSD 1375
D R+ LQ + ++ K + +++D
Sbjct: 994 DTRYRKGPLQKGKLENPFKPTKNVEQTD 1021
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 337 bits (865), Expect = 1e-91
Identities = 260/869 (29%), Positives = 420/869 (47%), Gaps = 76/869 (8%)
Query: 609 ITLKEGEGPVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWR 668
I LKEG P+ +P P K EI ++++L VIR S S +SSPV+LVKKKD S R
Sbjct: 934 IELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIR 993
Query: 669 MCVDYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFR 728
MC+DYR +NK + P+P IE L L G + ++ D+ +G+ Q+ + E+ TAF
Sbjct: 994 MCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFA 1053
Query: 729 THEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQ 788
+E+ V+PFGL+ +P+ FQ M +I LL V+ DD+L+ SKD HL+ ++
Sbjct: 1054 IGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVK 1113
Query: 789 EVLGILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVR 848
E L +R+ G+ KC +++VEYLGH ++ GVE K + + + P NVK ++
Sbjct: 1114 EALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQ 1173
Query: 849 GFLGLTGYYRKFIRDYGKIAKPLTEL-TKKNGFEWSEKAQEAFETLKKKLTTSPVLALPD 907
FLGL GYYRKFI ++ +IA LT L + K + W ++ + AF+ LKK + +PVLA PD
Sbjct: 1174 SFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKLVCQTPVLAQPD 1233
Query: 908 F------SKEFTIECDASGVGVGAILMQE-----KRPIAYFSKALGVRNLSKSAYEKELM 956
+ F I DAS G+GA+L QE + PIA+ SKAL + E +
Sbjct: 1234 VEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQHPIAFASKALSPAETRYHITDLEAL 1293
Query: 957 ALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQKVVTMEQQNWAAKLLGFDFEISYKPGK 1016
A+ A++ ++ + G V TD + L LL+ + W+ ++L FD +I Y GK
Sbjct: 1294 AMMFALRRFKTIIYGTAITVFTDHKPLISLLKGSPLADRLWRWSIEILEFDVKIVYLAGK 1353
Query: 1017 LNKGADALSR---------VNETLELRQMGSHVD-----------W---LGGKD--LKEE 1051
N ADALSR +T EL + + + W L G+D KE
Sbjct: 1354 ANAVADALSRGGCPPNELEEEQTKELTSIVNAIQTELPDILDSSCWLERLKGEDEGWKEV 1413
Query: 1052 VSKDE--ELQRIIKSVHEKKDSSLGY------TYENGILLYEGRLVLPRESPLIHTMLTE 1103
++ E + + K V + + SL Y +N + + R V+P + + +L E
Sbjct: 1414 IAALEGGKTKGTFKIVGIESEISLEYYKIVGGVLKNTEIEEQSRSVVPEK--IRTPLLKE 1471
Query: 1104 FHTTPQGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLP 1163
H GH G + +R + YW M+ V++ V+ C C L ++ L
Sbjct: 1472 LHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKC-----LCANDHSKLTSSL 1526
Query: 1164 IPERI---WEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGK 1220
P R+ E ++ D + +G IL ++D +KY +P+ A++V + F +
Sbjct: 1527 TPYRMTFPLEIVACDLMDVGLSVQGNRYILTIIDLFTKYGTAVPIPDK-KAETVLKAFVE 1585
Query: 1221 EIVRLHG-VPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLET 1279
G +P +++D+ FV+ + + + + + Y+ ++G E N+ +
Sbjct: 1586 RWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMH 1645
Query: 1280 YLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEA 1339
++ A P W + +A Y YN C H +TG TP +++GR + GE +A
Sbjct: 1646 IMKKKTA-VPMEWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPLE-MSGE---DA 1700
Query: 1340 VQKELLERDEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVTR 1399
V + DE L +L + Q K+ A R++ S+ + + + HR +R
Sbjct: 1701 VGINYADMDEYKHLLTQELLKVQKIAKEHAMREQESYK-SLFDQKYAS-KKHRFPQPGSR 1758
Query: 1400 IY------------AKLAAKYYGPYPVVA 1416
+ KL K+ GPY V++
Sbjct: 1759 VLLEIPSEKLGAQCPKLVNKWSGPYRVIS 1787
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 333 bits (853), Expect = 3e-90
Identities = 187/485 (38%), Positives = 283/485 (57%), Gaps = 24/485 (4%)
Query: 579 QAELDMILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQKNEIENQVK 638
Q L+ +L +F+ P A + P+ + Y YP + + E+E Q+
Sbjct: 85 QEILNSLLGEFPRIFEPPLSGMSVETAVKAEIRTNTQDPIYAKSYPYPVNMRGEVERQID 144
Query: 639 ELLEGGVIRHSTSSFSSPVILVKKK-----DHSWRMCVDYRALNKATIPDKFPIPIIEEL 693
ELL+ G+IR S S ++SP+ +V KK + +RM VD++ LN TIPD +PIP I
Sbjct: 145 ELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINAT 204
Query: 694 LDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSL 753
L L A+YF+ LDL SG+HQ+ +KE D+ KTAF T G YEFL +PFGL NAP+ FQ +
Sbjct: 205 LASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRM 264
Query: 754 MNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREKV 813
++DI R + K V+ DDI+V+S+D+ +H ++L+ VL L + L N +K F +V
Sbjct: 265 IDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQV 324
Query: 814 EYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTE 873
E+LG++++ G++ DP KV +++ P P +VK ++ FLG+T YYRKFI+DY K+AKPLT
Sbjct: 325 EFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTN 384
Query: 874 LTK------------KNGFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGV 921
LT+ K E A ++F LK L +S +LA P F+K F + DAS
Sbjct: 385 LTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNW 444
Query: 922 GVGAILMQE----KRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGR-HFKV 976
+GA+L Q+ RPIAY S++L + + EKE++A+ ++ + R YL G KV
Sbjct: 445 AIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKV 504
Query: 977 TTDQRSLKELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRVNETLELRQM 1036
TD + L L + + + W A++ ++ E+ YKPGK N ADALSR+ +L Q+
Sbjct: 505 YTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRIPP--QLNQL 562
Query: 1037 GSHVD 1041
+ +D
Sbjct: 563 STDLD 567
Score = 42.7 bits (99), Expect = 0.008
Identities = 68/279 (24%), Positives = 106/279 (37%), Gaps = 25/279 (8%)
Query: 1112 HSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWED 1171
H G +L Y+ M S ++ C C+ KY LQP PIP E
Sbjct: 705 HRGPTEIRLQLLEKYYFPRMSSTIRLQTSSCQCCKLYKYERHPNKPNLQPTPIPNYPCEI 764
Query: 1172 LSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLH--GVP 1229
L +D I L K L +D+ SK+A L+ +K+ + + LH P
Sbjct: 765 LHID-IFALEK----RLYLSCIDKFSKFAKLFHLQ----SKASVHLRETLVEALHYFTAP 815
Query: 1230 SSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQP 1289
+VSD + + + L + E +GQ E + RC + D+
Sbjct: 816 KVLVSDNERGLLCPTVLNYLRSLDIDLYYAPTQKSEVNGQVERFHSTFLEIYRC-LKDEL 874
Query: 1290 KTW--VIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLER 1347
T+ V + A YNT H+ T P +V + R QG T E ++
Sbjct: 875 PTFKPVELVHIAVDRYNTSVHSVTNRKPADVFFDRSSRVN---YQGLTDFRRQTLEDIKG 931
Query: 1348 DEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFV 1386
+Q+R +AR ++R +S+ G+ VFV
Sbjct: 932 LIEYKQIRGNMARNKNR--------DEPKSYGPGDEVFV 962
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 300 bits (769), Expect = 2e-80
Identities = 174/479 (36%), Positives = 268/479 (55%), Gaps = 15/479 (3%)
Query: 562 KEKVQLEKDNKGVTGVQQAELDMILERHSVVFQAPKGLPPKRNK--QHAITLKEGEGPVN 619
+ K L + K + +++L+ I + +F A + P N + + LK+ E PV
Sbjct: 259 RNKTVLSQLKKNFPELFKSQLENICSEYIDIF-ALESEPITVNNLYKQQLRLKDDE-PVY 316
Query: 620 VRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDH------SWRMCVDY 673
+ YR PH Q EI+ QV++L++ ++ S S ++SP++LV KK WR+ +DY
Sbjct: 317 TKNYRSPHSQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDY 376
Query: 674 RALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGH 733
R +NK + DKFP+P I+++LD+L A+YFS LDL SG+HQ+ + E T+F T G
Sbjct: 377 RQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGS 436
Query: 734 YEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGI 793
Y F +PFGL AP++FQ +M F + + ++ DD++V L++L EV G
Sbjct: 437 YRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGK 496
Query: 794 LREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGL 853
RE L + +KC F +V +LGH + +G+ D K + + ++P P + R F+
Sbjct: 497 CREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAF 556
Query: 854 TGYYRKFIRDYGKIAKPLTELTKKN-GFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEF 912
YYR+FI+++ ++ +T L KKN FEW+++ Q+AF LK +L +L PDFSKEF
Sbjct: 557 CNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEF 616
Query: 913 TIECDASGVGVGAILMQ----EKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPY 968
I DAS GA+L Q + P+AY S+A +KS E+EL A+ AI H+RPY
Sbjct: 617 CITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPY 676
Query: 969 LLGRHFKVTTDQRSLKELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRV 1027
+ G+HF V TD R L L + + +L ++F + Y GK N ADALSR+
Sbjct: 677 IYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRI 735
Score = 113 bits (282), Expect = 5e-24
Identities = 85/326 (26%), Positives = 155/326 (47%), Gaps = 26/326 (7%)
Query: 1100 MLTEFHTTP-QGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGL 1158
+L+ H P QGGH+G +T ++ + YW+ M ++++V++C CQ+ K +
Sbjct: 896 ILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTK--- 952
Query: 1159 LQPLPI---PERIWEDLSMDFITGLPKSK-GFEAILVVVDRLSKYAHFIPLKHPYTAKSV 1214
P+ I PE ++ + +D I LPKS+ G E + ++ L+KY IP+ + +AK+V
Sbjct: 953 -TPMTITETPEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANK-SAKTV 1010
Query: 1215 AEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVN 1274
A+ + + +G + ++D + ++ +L K K STA+H ++ G E +
Sbjct: 1011 AKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSH 1070
Query: 1275 RCLETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRW---- 1330
R L Y+R +I+ W +W+ + Y +NT P+E+V+GR +
Sbjct: 1071 RTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHFNKLH 1130
Query: 1331 -IQGETRVEAVQKELLERDE-ALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKL 1388
I+ ++ KE R E A + R L +++ K+ D K D +G+ V ++
Sbjct: 1131 SIEPIYNIDDYAKESKYRLEVAYARARKLLEAHKEKNKENYDLKVKDIELEVGDKVLLR- 1189
Query: 1389 RAHRQKSVVTRIYAKLAAKYYGPYPV 1414
+ KL KY GPY +
Sbjct: 1190 ---------NEVGHKLDFKYTGPYKI 1206
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 287 bits (734), Expect = 2e-76
Identities = 168/466 (36%), Positives = 260/466 (55%), Gaps = 21/466 (4%)
Query: 583 DMILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQKNEIENQVKELLE 642
D I+ R + LP I + E PV R Y + + N+VK+LL+
Sbjct: 148 DTIIRRKKAFSTTNEALPFNTAVTATIRTVDNE-PVYSRAYPTLMGVSDFVNNEVKQLLK 206
Query: 643 GGVIRHSTSSFSSPVILVKKK------DHSWRMCVDYRALNKATIPDKFPIPIIEELLDE 696
G+IR S S ++SP +V KK + + R+ +D+R LN+ TIPD++P+P I +L
Sbjct: 207 DGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILAN 266
Query: 697 LHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMND 756
L A++F+ LDLKSGYHQ+ + E D KT+F + G YEF +PFGL NA S FQ ++D
Sbjct: 267 LGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDD 326
Query: 757 IFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREKVEYL 816
+ R + K V+ DD++++S++ H+ H+ VL L + + +++K F +E VEYL
Sbjct: 327 VLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYL 386
Query: 817 GHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTE--- 873
G ++S G + DP KV+++ +P P V VR FLGL YYR FI+D+ IA+P+T+
Sbjct: 387 GFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILK 446
Query: 874 ---------LTKKNGFEWSEKAQEAFETLKKKLTTSPV-LALPDFSKEFTIECDASGVGV 923
++KK E++E + AF+ L+ L + V L PDF K F + DAS G+
Sbjct: 447 GENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGI 506
Query: 924 GAILMQEKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLG-RHFKVTTDQRS 982
GA+L QE RPI S+ L + + E+EL+A+ A+ + +L G R + TD +
Sbjct: 507 GAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQP 566
Query: 983 LKELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRVN 1028
L + + + + W + + + ++ YKPGK N ADALSR N
Sbjct: 567 LTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQN 612
Score = 63.5 bits (153), Expect = 4e-09
Identities = 67/280 (23%), Positives = 110/280 (38%), Gaps = 37/280 (13%)
Query: 1112 HSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWED 1171
H +++ + Y+ M S ++ V C VC + KY L PIP E
Sbjct: 750 HRAAQENIKQVLRDYYFPKMGSLAKEVVANCRVCTQAKYDRHPKKQELGETPIPSYTGEM 809
Query: 1172 LSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGK--EIVRLHGVP 1229
+ +D S + L +D+ SKYA + P ++++ ++ +I+ L
Sbjct: 810 VHIDIF-----STDRKLFLTCIDKFSKYA----IVQPVVSRTIVDITAPLLQIINLFPNI 860
Query: 1230 SSIVSDRDPIFVSNFWRELFKLQ-GTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIAD- 1287
++ D +P F S + K G + + H S+GQ E + L RC D
Sbjct: 861 KTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVERFHSTLAEIARCLKLDK 920
Query: 1288 QPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLER 1347
+ V I A YN H+ T P EVV+ P R ++ + R+ Q++ + R
Sbjct: 921 KTNDTVELILRATIEYNKTVHSVTRERPIEVVH---PGAHERCLEIKARLVKAQQDSIGR 977
Query: 1348 DEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVK 1387
+ RQ +R F +GE VFVK
Sbjct: 978 NNPSRQ---------------------NRVFEVGERVFVK 996
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 201 bits (510), Expect = 2e-50
Identities = 184/669 (27%), Positives = 314/669 (46%), Gaps = 52/669 (7%)
Query: 404 SQVEQV-GKDKPQTIKLLGLI-----QGLPIVILIDSGATHNFVSTSLVHKLGKTVVDTP 457
+Q+EQV P +I + G + + + + +D+GA+ S ++ + + P
Sbjct: 10 TQIEQVMNVTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERP 69
Query: 458 SLRITLGDGSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVN 517
+ + + DGS CK++ +I + + +D ++G + + I
Sbjct: 70 -IMVKIADGSSITISKVCKDIDLIIAGEIFKIPTVYQQESGIDFIIGNNFCQLYEPFIQF 128
Query: 518 WDK----KTMSFWSGHKWVTLQGHEEQEGLLVALQTM----------ISRAGFSGYLGK- 562
D+ K S+ +T EG L +++ IS L +
Sbjct: 129 TDRVIFTKNKSYPVHITKLTRAVRVGIEGFLESMKKRSKTQQPEPVNISTNKIENPLEEI 188
Query: 563 ----EKVQLEKDNKGVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQH---AITLKEGE 615
E +L ++ +T + +++ +LE+ V + P L P + KQ +I L +
Sbjct: 189 AILSEGRRLSEEKLFITQQRMQKIEELLEK--VCSENP--LDPNKTKQWMKASIKLSDPS 244
Query: 616 GPVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILV----KKKDHSWRMCV 671
+ V+P +Y + E + Q+KELL+ VI+ S S +P LV +K+ RM V
Sbjct: 245 KAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVV 304
Query: 672 DYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHE 731
+Y+A+NKATI D + +P +ELL + G + FS D KSG+ QV + +E TAF +
Sbjct: 305 NYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQ 364
Query: 732 GHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVL 791
GHYE+ V+PFGL APS FQ M++ FR + RK V+ DDILV+S + HL H+ +L
Sbjct: 365 GHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDILVFSNNEEDHLLHVAMIL 423
Query: 792 GILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWP-TPKNVKGVRGF 850
+ G++ ++KK ++K+ +LG I + +E + +P T ++ K ++ F
Sbjct: 424 QKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRF 483
Query: 851 LGLTGYYRKFIRDYGKIAKPLTELTKKN-GFEWSEKAQEAFETLKKKLTTSPVLALPDFS 909
LG+ Y +I +I KPL K+N ++W+++ + +KK L P L P
Sbjct: 484 LGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPE 543
Query: 910 KEFTIECDAS----GVGVGAILMQE----KRPIAYFSKALGVRNLSKSAYEKELMALGLA 961
++ IE DAS G + AI + E + Y S + + + +KE +A+
Sbjct: 544 EKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINT 603
Query: 962 IQHWRPYLLGRHFKVTTDQRSLKEL--LQQKVVTMEQQN--WAAKLLGFDFEISYKPGKL 1017
I+ + YL HF + TD K L K + +N W A L + F++ + G
Sbjct: 604 IKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTD 663
Query: 1018 NKGADALSR 1026
N AD LSR
Sbjct: 664 NHFADFLSR 672
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 200 bits (509), Expect = 2e-50
Identities = 184/669 (27%), Positives = 313/669 (46%), Gaps = 52/669 (7%)
Query: 404 SQVEQV-GKDKPQTIKLLGLI-----QGLPIVILIDSGATHNFVSTSLVHKLGKTVVDTP 457
+Q EQV P +I + G + + + + +D+GA+ S ++ + + P
Sbjct: 10 TQTEQVMNVTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERP 69
Query: 458 SLRITLGDGSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVN 517
+ + + DGS CK++ +I + + +D ++G + + I
Sbjct: 70 -IMVKIADGSSITISKVCKDIDLIIAREIFKIPTVYQQESGIDFIIGNNFCQLYEPFIQF 128
Query: 518 WDK----KTMSFWSGHKWVTLQGHEEQEGLLVALQTM----------ISRAGFSGYLGK- 562
D+ K S+ +T EG L +++ IS L +
Sbjct: 129 TDRVIFTKNKSYPVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIENPLKEI 188
Query: 563 ----EKVQLEKDNKGVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQH---AITLKEGE 615
E +L ++ +T + +++ +LE+ V + P L P + KQ +I L +
Sbjct: 189 AILSEGRRLSEEKLFITQQRMQKIEELLEK--VCSENP--LDPNKTKQWMKASIKLSDPS 244
Query: 616 GPVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILV----KKKDHSWRMCV 671
+ V+P +Y + E + Q+KELL+ VI+ S S +P LV +K+ RM V
Sbjct: 245 KAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVV 304
Query: 672 DYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHE 731
+Y+A+NKATI D + +P +ELL + G + FS D KSG+ QV + +E TAF +
Sbjct: 305 NYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQ 364
Query: 732 GHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVL 791
GHYE+ V+PFGL APS FQ M++ FR + RK V+ DDILV+S + HL H+ +L
Sbjct: 365 GHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDILVFSNNEEDHLLHVAMIL 423
Query: 792 GILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWP-TPKNVKGVRGF 850
+ G++ ++KK ++K+ +LG I + +E + +P T ++ K ++ F
Sbjct: 424 QKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRF 483
Query: 851 LGLTGYYRKFIRDYGKIAKPLTELTKKN-GFEWSEKAQEAFETLKKKLTTSPVLALPDFS 909
LG+ Y +I +I KPL K+N ++W+++ + +KK L P L P
Sbjct: 484 LGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPE 543
Query: 910 KEFTIECDAS----GVGVGAILMQE----KRPIAYFSKALGVRNLSKSAYEKELMALGLA 961
++ IE DAS G + AI + E + Y S + + + +KE +A+
Sbjct: 544 EKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINT 603
Query: 962 IQHWRPYLLGRHFKVTTDQRSLKEL--LQQKVVTMEQQN--WAAKLLGFDFEISYKPGKL 1017
I+ + YL HF + TD K L K + +N W A L + F++ + G
Sbjct: 604 IKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTD 663
Query: 1018 NKGADALSR 1026
N AD LSR
Sbjct: 664 NHFADFLSR 672
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 199 bits (507), Expect = 4e-50
Identities = 183/669 (27%), Positives = 312/669 (46%), Gaps = 52/669 (7%)
Query: 404 SQVEQV-GKDKPQTIKLLGLI-----QGLPIVILIDSGATHNFVSTSLVHKLGKTVVDTP 457
+Q EQV P +I + G + + + + +D+GA+ S ++ + + P
Sbjct: 10 TQTEQVMNVTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERP 69
Query: 458 SLRITLGDGSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVN 517
+ + + DGS CK++ +I + + +D ++G + + I
Sbjct: 70 -IMVKIADGSSITISKVCKDIDLIIAGEIFRIPTVYQQESGIDFIIGNNFCQLYEPFIQF 128
Query: 518 WDK----KTMSFWSGHKWVTLQGHEEQEGLLVALQTM----------ISRAGFSGYLGK- 562
D+ K S+ +T EG L +++ IS L +
Sbjct: 129 TDRVIFTKNKSYPVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIENPLEEI 188
Query: 563 ----EKVQLEKDNKGVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQH---AITLKEGE 615
E +L ++ +T + +++ +LE+ V + P L P + KQ +I L +
Sbjct: 189 AILSEGRRLSEEKLFITQQRMQKIEELLEK--VCSENP--LDPNKTKQWMKASIKLSDPS 244
Query: 616 GPVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILV----KKKDHSWRMCV 671
+ V+P +Y + E + Q+KELL+ VI+ S S +P LV +K+ RM V
Sbjct: 245 KAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVV 304
Query: 672 DYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHE 731
+Y+A+NKAT+ D + +P +ELL + G + FS D KSG+ QV + +E TAF +
Sbjct: 305 NYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQ 364
Query: 732 GHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVL 791
GHYE+ V+PFGL APS FQ M++ FR + RK V+ DDILV+S + HL H+ +L
Sbjct: 365 GHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDILVFSNNEEDHLLHVAMIL 423
Query: 792 GILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWP-TPKNVKGVRGF 850
+ G++ ++KK ++K+ +LG I + +E + +P T ++ K ++ F
Sbjct: 424 QKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRF 483
Query: 851 LGLTGYYRKFIRDYGKIAKPLTELTKKN-GFEWSEKAQEAFETLKKKLTTSPVLALPDFS 909
LG+ Y +I +I KPL K+N + W+++ + +KK L P L P
Sbjct: 484 LGILTYASDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFPPLHHPLPE 543
Query: 910 KEFTIECDAS----GVGVGAILMQE----KRPIAYFSKALGVRNLSKSAYEKELMALGLA 961
++ IE DAS G + AI + E + Y S + + + +KE +A+
Sbjct: 544 EKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINT 603
Query: 962 IQHWRPYLLGRHFKVTTDQRSLKEL--LQQKVVTMEQQN--WAAKLLGFDFEISYKPGKL 1017
I+ + YL HF + TD K L K + +N W A L + F++ + G
Sbjct: 604 IKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTD 663
Query: 1018 NKGADALSR 1026
N AD LSR
Sbjct: 664 NHFADFLSR 672
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 674
Score = 197 bits (501), Expect = 2e-49
Identities = 182/674 (27%), Positives = 309/674 (45%), Gaps = 69/674 (10%)
Query: 404 SQVEQVGK-DKPQTIKLLGLI-----QGLPIVILIDSGATHNFVSTSLVHKLGKTVVDTP 457
+Q EQV P +I + G + + + + +D+GA+ S ++ + + P
Sbjct: 12 NQTEQVMNITNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWINAERP 71
Query: 458 SLRITLGDGSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVN 517
+ + + DGS C+++ +I + + +D ++G + + I
Sbjct: 72 -IMVKIADGSSITINKVCRDIDLIIAGEIFHIPTVYQQESGIDFIIGNNFCQLYEPFIQF 130
Query: 518 WDKKTMSFWSGHKWVTLQGHEEQEGLLVALQTMISRAGFSGYLGKEKVQ----------- 566
D+ + K T H +A T R G G+L K +
Sbjct: 131 TDRVIFT-----KDRTYPVH-------IAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNI 178
Query: 567 -------------LEKDNKGVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQH---AIT 610
L ++ +T + +++ +LE+ V + P L P + KQ +I
Sbjct: 179 STNKIAILSEGRRLSEEKLFITQQRMQKIEELLEK--VCSENP--LDPNKTKQWMKASIK 234
Query: 611 LKEGEGPVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILV----KKKDHS 666
L + + V+P +Y + E + Q+KELL+ VI+ S S +P LV +K+
Sbjct: 235 LSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGK 294
Query: 667 WRMCVDYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTA 726
RM V+Y+A+NKAT+ D + P +ELL + G + FS D KSG+ QV + +E TA
Sbjct: 295 KRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTA 354
Query: 727 FRTHEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEH 786
F +GHYE+ V+PFGL APS FQ M++ FR + RK V+ DDILV+S + HL H
Sbjct: 355 FTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDILVFSNNEEDHLLH 413
Query: 787 LQEVLGILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWP-TPKNVK 845
+ +L + G++ ++KK ++K+ +LG I + +E + +P T ++ K
Sbjct: 414 VAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKK 473
Query: 846 GVRGFLGLTGYYRKFIRDYGKIAKPLTELTKKN-GFEWSEKAQEAFETLKKKLTTSPVLA 904
++ FLG+ Y +I +I KPL K+N ++W+++ + +KK L P L
Sbjct: 474 QLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLH 533
Query: 905 LPDFSKEFTIECDAS----GVGVGAILMQE----KRPIAYFSKALGVRNLSKSAYEKELM 956
P ++ IE DAS G + AI + E + Y S + + + +KE +
Sbjct: 534 HPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETL 593
Query: 957 ALGLAIQHWRPYLLGRHFKVTTDQRSLKEL--LQQKVVTMEQQN--WAAKLLGFDFEISY 1012
A+ I+ + YL HF + TD K L K + +N W A L + F++ +
Sbjct: 594 AVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEH 653
Query: 1013 KPGKLNKGADALSR 1026
G N AD LSR
Sbjct: 654 IKGTDNHFADFLSR 667
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 680
Score = 192 bits (488), Expect = 6e-48
Identities = 147/482 (30%), Positives = 246/482 (50%), Gaps = 26/482 (5%)
Query: 566 QLEKDNKGVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQH---AITLKEGEGPVNVRP 622
+L ++ +T + + + +LE+ V + P L P + KQ +I L + + V+P
Sbjct: 197 RLSEEKLFITQQRMQKTEELLEK--VCSENP--LDPNKTKQWMKASIKLSDPSKAIKVKP 252
Query: 623 YRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWR----MCVDYRALNK 678
+Y + E + Q+KELL+ VI+ S S +P LV + + R M V+Y+A+NK
Sbjct: 253 MKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNYKAMNK 312
Query: 679 ATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLV 738
AT+ D + +P +ELL + G + FS D KSG+ QV + +E TAF +GHYE+ V
Sbjct: 313 ATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNV 372
Query: 739 MPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQG 798
+PFGL APS FQ M++ FR + RK V+ DDI+V+S + HL H+ +L + G
Sbjct: 373 VPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDIVVFSNNEEDHLLHVAMILQKCNQHG 431
Query: 799 LVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWP-TPKNVKGVRGFLGLTGYY 857
++ ++KK ++K+ +LG I + +E + +P T ++ K ++ FLG+ Y
Sbjct: 432 IILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYA 491
Query: 858 RKFIRDYGKIAKPLTELTKKN-GFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIEC 916
+I + ++ +PL K+N ++W+++ + +KK L P L P ++ IE
Sbjct: 492 SDYIPNLAQMRQPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIET 551
Query: 917 DAS----GVGVGAILMQE----KRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPY 968
DAS G + AI + E + Y S + + + +KE +A+ I+ + Y
Sbjct: 552 DASDDYWGGMLKAIKINEGTNTELICRYRSGSFKAAERNYHSNDKETLAVINTIKKFSIY 611
Query: 969 LLGRHFKVTTDQRSLKEL--LQQKVVTMEQQN--WAAKLLGFDFEISYKPGKLNKGADAL 1024
L HF + TD K L K + +N W A L + F++ + G N AD L
Sbjct: 612 LTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFL 671
Query: 1025 SR 1026
SR
Sbjct: 672 SR 673
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 659
Score = 184 bits (467), Expect = 2e-45
Identities = 169/650 (26%), Positives = 293/650 (45%), Gaps = 59/650 (9%)
Query: 417 IKLLGLIQGLPIVILIDSGATHNFVSTSLVHKLGKTVVDTPSLRITLGDGSQARTKGKCK 476
+K G L + +D+G++ S ++ + + P L I + +G + C
Sbjct: 18 LKFPGYQTNLDLHCYVDTGSSLCMASKYVIPEEYWQTAEKP-LNIKIANGKIIQLTKVCS 76
Query: 477 ELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVNWDKKTMSFWSGHKWVTLQG 536
+L I G + + +D++LG + + I D+ +
Sbjct: 77 KLPIRLGGERFLIPTLFQQESGIDLLLGNNFCQLYSPFIQYTDR-------------IYF 123
Query: 537 HEEQEGLLVALQTMISRAGFSGYLG--KEKVQLEKDN-------------KGVTGVQQAE 581
H ++ +++ T + G G+L K+K ++ + +G V +
Sbjct: 124 HLNKQSVIIGKITKAYQYGVKGFLESMKKKSKVNRPEPINITSNQHLFLEEGGNHVDEML 183
Query: 582 LDMILERHSVVFQ------APKGLPPKRNKQH---AITLKEGEGPVNVRPYRYPHHQKNE 632
++ + + S + + + + P+++KQ I L + + V V+P Y + E
Sbjct: 184 YEIQISKFSAIEEMLERVSSENPIDPEKSKQWMTATIELIDPKTVVKVKPMSYSPSDREE 243
Query: 633 IENQVKELLEGGVIRHSTSSFSSPVILVK----KKDHSWRMCVDYRALNKATIPDKFPIP 688
+ Q+KELLE VI+ S S+ SP LV+ ++ RM V+Y+A+NKAT D +P
Sbjct: 244 FDRQIKELLELKVIKPSKSTHMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHNLP 303
Query: 689 IIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPS 748
+ELL + G + +S D KSG QV + +E TAF +GHY++ V+PFGL APS
Sbjct: 304 NKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQAPS 363
Query: 749 TFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILR---EQGLVANRKK 805
F + + K V+ DDILV+S EH VL ILR + G++ ++KK
Sbjct: 364 IFPKTYANSHSNQYSKYCCVYVDDILVFSN--TGRKEHYIHVLNILRRCEKLGIILSKKK 421
Query: 806 CLFGREKVEYLGHMISGQGVEVDPSKV-ESVTSWPTP-KNVKGVRGFLGLTGYYRKFIRD 863
+EK+ +LG I QG + + E + +P ++ K ++ FLG+ Y +I
Sbjct: 422 AQLFKEKINFLGLEID-QGTHCPQNHILEHIHKFPDRIEDKKQLQRFLGILTYASDYIPK 480
Query: 864 YGKIAKPL-TELTKKNGFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVG 922
I KPL ++L + + + W++ + +KK L + P L P+ + + IE DAS
Sbjct: 481 LASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKLYHPEPNDKLVIETDASEEF 540
Query: 923 VGAILMQEKRPIAYFSK-ALGVRNLSKSAY---EKELMALGLAIQHWRPYLLGRHFKVTT 978
G IL Y + A G ++ Y EKEL+A+ I+ + YL F + T
Sbjct: 541 WGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLAVIRVIKKFSIYLTPSRFLIRT 600
Query: 979 DQRSLKELLQQKVVTMEQQ----NWAAKLLGFDFEISYKPGKLNKGADAL 1024
D ++ + + +Q W L +DF++ + G N AD L
Sbjct: 601 DNKNFTHFVNINLKGDRKQGRLVRWQMWLSQYDFDVEHIAGTKNVFADFL 650
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 666
Score = 183 bits (465), Expect = 3e-45
Identities = 171/674 (25%), Positives = 305/674 (44%), Gaps = 62/674 (9%)
Query: 395 EGELSSMSLSQVEQVGKD--KPQTIKLLGLI-----QGLPIVILIDSGATHNFVSTSLVH 447
EGEL L++ E + + P +I + G + + I +D+GA+ S ++
Sbjct: 9 EGELGHFCLNKQEMLHLNVTNPNSIYIEGKLSFEGYKSFNIHCYVDTGASLCIASRYIIP 68
Query: 448 KLGKTVVDTPS-LRITLGDGSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIE 506
+ + ++P +++ + + + CK L + + + +D ++G
Sbjct: 69 E--ELWENSPKDIQVKIANQELIKITKVCKNLKVKFAGKSFEIPTVYQQETGIDFLIGNN 126
Query: 507 WLRTLGDMIVNWDKKTMSFWSGHKWVTLQGHEEQEGLLVALQTMISRAGFSGYLGKEKVQ 566
+ R L + + W+ + + H + E +L+ T +L K
Sbjct: 127 FCR-LYNPFIQWEDR------------IAFHLKNEMVLIKKVTKAFSVSNPSFLENMKKD 173
Query: 567 LEKDNKGVTGVQQAELD------MILERHSVVFQ------APKGLPPKRNKQH---AITL 611
+ + T + + ++ +I E++ + Q + + P ++KQ +I L
Sbjct: 174 SKTEQIPGTNISKNIINPEERYFLITEKYQKIEQLLDKVCSENPIDPIKSKQWMKASIKL 233
Query: 612 KEGEGPVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVK----KKDHSW 667
+ + V+P Y + Q+KELL+ G+I S S SP LV+ ++
Sbjct: 234 IDPLKVIRVKPMSYSPQDREGFAKQIKELLDLGLIIPSKSQHMSPAFLVENEAERRRGKK 293
Query: 668 RMCVDYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAF 727
RM V+Y+A+N+ATI D +P ++ELL L G FS D KSG+ QV + EE TAF
Sbjct: 294 RMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEESQKLTAF 353
Query: 728 RTHEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHL 787
+GH+++ V+PFGL APS FQ M K +V+ DDI+V+S H H+
Sbjct: 354 TCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNG-ADKFCMVYVDDIIVFSNSELDHYNHV 412
Query: 788 QEVLGILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKV-ESVTSWPTP-KNVK 845
VL I+ + G++ ++KK +EK+ +LG I +G + + E++ +P ++ K
Sbjct: 413 YAVLKIVEKYGIILSKKKANLFKEKINFLGLEID-KGTHCPQNHILENIHKFPDRLEDKK 471
Query: 846 GVRGFLGLTGYYRKFIRDYGKIAKPL-TELTKKNGFEWSEKAQEAFETLKKKLTTSPVLA 904
++ FLG+ Y +I +I KPL +L K + W++ + + +KK L + P L
Sbjct: 472 HLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQSDSDYVKKIKKNLGSFPKLY 531
Query: 905 LPDFSKEFTIECDASGVGVGAILMQE-----KRPIAYFSKALGVRNLSKSAYEKELMALG 959
LP IE DAS G +L + Y S + + + +KEL+A+
Sbjct: 532 LPKPEDHLIIETDASDSFWGGVLKARALDGVELICRYSSGSFKQAEKNYHSNDKELLAVK 591
Query: 960 LAIQHWRPYLLGRHFKVTTDQRSLKELLQ-------QKVVTMEQQNWAAKLLGFDFEISY 1012
I + YL F V TD ++ L+ ++ + QNW +K + F++ +
Sbjct: 592 QVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGRLVRWQNWFSK---YQFDVEH 648
Query: 1013 KPGKLNKGADALSR 1026
G N AD L+R
Sbjct: 649 LEGVKNVLADCLTR 662
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 165 bits (418), Expect = 8e-40
Identities = 123/422 (29%), Positives = 208/422 (49%), Gaps = 34/422 (8%)
Query: 636 QVKELLEGGVIRHSTSSFSSPVILV-----------KKKDHSWRMCVDYRALNKATIPDK 684
Q+ LL+ VIR S S S +V K+K RM +Y+ LN+ T D+
Sbjct: 1421 QINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGKEKKGKERMVFNYKLLNENTESDQ 1480
Query: 685 FPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLM 744
+ +P I ++ ++ ++ +SK DLKSG+ QV ++EE V TAF YE+LVMPFGL
Sbjct: 1481 YSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAGNKLYEWLVMPFGLK 1540
Query: 745 NAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRK 804
NAP+ FQ M+++F+ K + V+ DDILV+S+ H +HL +L + +E GL+ +
Sbjct: 1541 NAPAIFQRKMDNVFKG-TEKFIAVYIDDILVFSETAEQHSQHLYTMLQLCKENGLILSPT 1599
Query: 805 KCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPK--NVKGVRGFLGLTGYYRKFIR 862
K G ++++LG + +++ P + + + K +G+R +LG+ Y R +I+
Sbjct: 1600 KMKIGTPEIDFLGASLGCTKIKLQPHIISKICDFSDEKLATPEGMRSWLGILSYARNYIQ 1659
Query: 863 DYGKIAKPLTELTKKNGFE-WSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGV 921
D GK+ +PL + G + + + + +K+K+ P L LP IE D
Sbjct: 1660 DIGKLVQPLRQKMAPTGDKRMNPETWKMVRQIKEKVKNLPDLQLPPKDSFIIIETDGCMT 1719
Query: 922 GVGAIL---------MQEKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLG- 971
G GA+ +R AY A G N KS + E+ A + ++ Y L
Sbjct: 1720 GWGAVCKWKMSKHDPRSTERICAY---ASGSFNPIKSTIDAEIQAAIHGLDKFKIYYLDK 1776
Query: 972 RHFKVTTDQRSL----KELLQQKVVTMEQQNWAAKLLGFDFEISYK--PGKLNKGADALS 1025
+ + +D ++ + + K + ++ L G ++++ GK N ADALS
Sbjct: 1777 KELIIRSDCEAIIKFYNKTNENKPSRVRWLTFSDFLTGLGITVTFEHIDGKHNGLADALS 1836
Query: 1026 RV 1027
R+
Sbjct: 1837 RM 1838
>POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat
protein; Protease (EC 3.4.23.-); Reverse transcriptase
(EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1675
Score = 154 bits (388), Expect = 2e-36
Identities = 113/407 (27%), Positives = 199/407 (48%), Gaps = 20/407 (4%)
Query: 625 YPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSW------RMCVDYRALNK 678
Y K E Q+KELL+ +I+ + + ++HS R+ +Y+ LN
Sbjct: 1191 YTPADKEVFEKQIKELLDNKLIKKADPTCRHRTAAFIVRNHSEEVAQKPRIVYNYKRLND 1250
Query: 679 ATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLV 738
D F IP +++ + A FSK DLK+G+H +++K++ T F EG Y + V
Sbjct: 1251 NMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTFTCSEGLYTWNV 1310
Query: 739 MPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQG 798
PFG+ NAP FQ M + F L K L++ DDIL+ S + H+EHL+ ++E G
Sbjct: 1311 CPFGIANAPCAFQRFMQESFGDL--KFALLYIDDILIASNNEKEHIEHLKIFFNRVKEVG 1368
Query: 799 LVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPK--NVKGVRGFLGLTGY 856
V ++KK ++VEYLG I + + P V+ + + K +KG++ +LGL Y
Sbjct: 1369 CVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNTLKGLQAYLGLLNY 1428
Query: 857 YRKFIRDYGKIAKPLTELTKKNGFE-WSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIE 915
R +I+D K+ PL + T KNG ++++ ++++++ L P + IE
Sbjct: 1429 ARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWNIIFKIEREVSKIKPLERPKETDYIIIE 1488
Query: 916 CDASGVGVGAILM--------QEKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRP 967
DAS G GA+L+ ++ IA ++ + ++ + E+ A+ A+ ++
Sbjct: 1489 TDASEEGWGAVLVCKPDKYSGKDTEKIAGYASGNFGEKKTWTSLDYEIEAINEALNKFQI 1548
Query: 968 YLLGRHFKVTTDQRSLKELLQQKVVTMEQQNWAAKLLGFDFEISYKP 1014
Y L + F + TD ++ + ++ + + KL + YKP
Sbjct: 1549 Y-LDKDFTIRTDCEAIVKGIKTEDYKKRSKTRWIKLRDNLLKDGYKP 1594
>M860_ARATH (P92523) Hypothetical mitochondrial protein AtMg00860
(ORF158)
Length = 158
Score = 152 bits (385), Expect = 5e-36
Identities = 72/131 (54%), Positives = 93/131 (70%), Gaps = 2/131 (1%)
Query: 784 LEHLQEVLGILREQGLVANRKKCLFGREKVEYLGH--MISGQGVEVDPSKVESVTSWPTP 841
+ HL VL I + ANRKKC FG+ ++ YLGH +ISG+GV DP+K+E++ WP P
Sbjct: 1 MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60
Query: 842 KNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELTKKNGFEWSEKAQEAFETLKKKLTTSP 901
KN +RGFLGLTGYYR+F+++YGKI +PLTEL KKN +W+E A AF+ LK +TT P
Sbjct: 61 KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120
Query: 902 VLALPDFSKEF 912
VLALPD F
Sbjct: 121 VLALPDLKLPF 131
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 149 bits (376), Expect = 6e-35
Identities = 110/350 (31%), Positives = 174/350 (49%), Gaps = 17/350 (4%)
Query: 609 ITLKEGEGPVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKD-HSW 667
I LK PV++R Y I+ + LE GV+R S +++P++ VKK +
Sbjct: 25 IDLKPTAMPVSIRQYPMSKEAHMGIQPHITRFLELGVLRPCRSPWNTPLLPVKKPGTRDY 84
Query: 668 RMCVDYRALNKATIPDKFPIPIIEELLDELHGAR-YFSKLDLKSGYHQVRVKEEDVHKTA 726
R D R +NK T+ +P LL L R +++ LDLK + + + + A
Sbjct: 85 RPVQDLREVNKRTMDIHPTVPNPYNLLSTLSPDRTWYTVLDLKDAFFCLPLAPQSQELFA 144
Query: 727 FRTHE------GHYEFLVMPFGLMNAPSTFQSLMN----DIFRHLLRKRVLVFFDDILVY 776
F + G + +P G N+P+ F ++ D +L + DD+L+
Sbjct: 145 FEWRDPERGISGQLTWTRLPQGFKNSPTLFDEALHRDLTDFRTQHPEVTLLQYVDDLLLA 204
Query: 777 SKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVT 836
+ + + + +L L ++G A+ KK + KV YLG+++S + P ++E+V
Sbjct: 205 APTKEACIRGTKHLLRELGDKGYRASAKKAQICQTKVTYLGYILSEGKRWLTPGRIETVA 264
Query: 837 SWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELTKKNG-FEWSEKAQEAFETLKK 895
P P+N + VR FLG G+ R +I + ++A PL LTK++ F W EK Q AFE LK+
Sbjct: 265 HIPPPQNPREVREFLGTAGFCRLWIPGFAELAAPLYALTKESAPFTWQEKHQSAFEALKE 324
Query: 896 KLTTSPVLALPDFSKEFTIECD-ASGVGVGAI---LMQEKRPIAYFSKAL 941
L ++P L LPD SK FT+ D G+ G + L KRP+AY SK L
Sbjct: 325 ALLSAPALGLPDTSKPFTLFIDEKQGIAKGVLTQKLGPWKRPVAYLSKKL 374
Score = 83.6 bits (205), Expect = 4e-15
Identities = 88/333 (26%), Positives = 143/333 (42%), Gaps = 24/333 (7%)
Query: 1085 EGRLVLPRESPLIHTMLTEFHTTPQGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDV 1144
EG++VLPR+ L M+ + H + + + G + ++ C V
Sbjct: 684 EGKIVLPRKEAL--AMIQQMHAWTHLSNQKLKLLIEKTDFLIPKAG--TLIEQVTSACKV 739
Query: 1145 CQRQKYLASS-PGGLLQPLPIPERIWEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFI 1203
CQ+ A+ P G P WE +DF P G++ +LV VD S +
Sbjct: 740 CQQVNAGATRVPEGKRTRGNRPGVYWE---IDFTEVKPHYAGYKYLLVFVDTFSGWVEAY 796
Query: 1204 PLKHPYTAKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYH 1263
P + TA VA+ +EI G+P I SD P FVS + L + G K+ AY
Sbjct: 797 PTRQE-TAHMVAKKILEEIFPRFGLPKVIGSDNGPAFVSQVSQGLARTLGINWKLHCAYR 855
Query: 1264 PESDGQSEVVNRCL-ETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGR 1322
P+S GQ E +NR + ET + + K W + A + G+TP+E++YG
Sbjct: 856 PQSSGQVERMNRTIKETLTKLTLETGLKDWRRLLSLALLRARNTPN-RFGLTPYEILYGG 914
Query: 1323 PPPTITRWIQGETRVEAVQKELLERDEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGE 1382
PPP T + + +L R + L+ ++ Q+ + + ++ F +G+
Sbjct: 915 PPPLST--LLNSFSPSDPKTDLQARLKGLQAVQAQIWTPLAELYR-PGHPQTSYPFQVGD 971
Query: 1383 WVFVKLRAHRQKSVVTRIYAKLAAKYYGPYPVV 1415
V+V R HR + L ++ GPY V+
Sbjct: 972 SVYV--RWHRSQG--------LEPRWKGPYIVL 994
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,027,952
Number of Sequences: 164201
Number of extensions: 8696561
Number of successful extensions: 24288
Number of sequences better than 10.0: 154
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 23796
Number of HSP's gapped (non-prelim): 317
length of query: 1566
length of database: 59,974,054
effective HSP length: 124
effective length of query: 1442
effective length of database: 39,613,130
effective search space: 57122133460
effective search space used: 57122133460
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0096b.4