BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0096b.3
         (223 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UBP4_YEAST (P32571) Ubiquitin carboxyl-terminal hydrolase 4 (EC ...    34  0.31
RECA_MYCLE (P35901) RecA protein (Recombinase A) [Contains: Mle ...    29  7.7
K6P2_YEAST (P16862) 6-phosphofructokinase beta subunit (EC 2.7.1...    29  7.7

>UBP4_YEAST (P32571) Ubiquitin carboxyl-terminal hydrolase 4 (EC
           3.1.2.15) (Ubiquitin thiolesterase 4)
           (Ubiquitin-specific processing protease 4)
           (Deubiquitinating enzyme 4) (Vacuole biogenesis protein
           SSV7)
          Length = 926

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)

Query: 28  VVDDVVYHLQLLSGNTNGLSIQTRGMLSPHIHHRMQD 64
           + DD VY    ++GNT+GLS+Q    +SP I H M D
Sbjct: 338 IKDDSVY----INGNTSGLSLQHLPKMSPSIRHSMDD 370


>RECA_MYCLE (P35901) RecA protein (Recombinase A) [Contains: Mle
           recA intein]
          Length = 711

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 18/63 (28%), Positives = 33/63 (51%), Gaps = 1/63 (1%)

Query: 48  IQTRGMLSPHIHHRMQDVGALVELDPGTPVPEVLALDSSLILPDALKFVS-VMTKAIRDL 106
           +Q +  L  +I H +++          TP+PE++ L  ++ L D  KF+S    KA+  L
Sbjct: 355 LQWKKALMGNIRHTVRENSMGASFIDFTPLPELVELQRAVYLGDGKKFLSEEYLKALTPL 414

Query: 107 IIA 109
           ++A
Sbjct: 415 VLA 417


>K6P2_YEAST (P16862) 6-phosphofructokinase beta subunit (EC
           2.7.1.11) (Phosphofructokinase 2) (Phosphohexokinase)
           (6PF-1-K beta subunit)
          Length = 959

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 18/64 (28%), Positives = 32/64 (49%), Gaps = 1/64 (1%)

Query: 62  MQDVGALVELDPGTPVPEVLALDSSLILPDALKFVSVMTKAIRDLIIAKQVGVVFDGTDE 121
           ++ V A++E  P TP P +   ++ ++    ++ V  +TKA+ + I AK         D 
Sbjct: 501 LEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVK-LTKAVAEAIQAKDFKRAMSLRDT 559

Query: 122 EAIE 125
           E IE
Sbjct: 560 EFIE 563


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.324    0.142    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,547,062
Number of Sequences: 164201
Number of extensions: 1105025
Number of successful extensions: 2448
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2447
Number of HSP's gapped (non-prelim): 3
length of query: 223
length of database: 59,974,054
effective HSP length: 106
effective length of query: 117
effective length of database: 42,568,748
effective search space: 4980543516
effective search space used: 4980543516
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)