BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0093b.4
(565 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PRR1_ARATH (Q9LKL2) Two-component response regulator-like APRR1 ... 512 e-145
PRR3_ARATH (Q9LVG4) Two-component response regulator-like APRR3 ... 177 5e-44
PRR5_ARATH (Q6LA42) Two-component response regulator-like APRR5 ... 120 1e-26
PRR9_ARATH (Q8L500) Two-component response regulator-like APRR9 ... 113 2e-24
PRR7_ARATH (Q93WK5) Two-component response regulator-like APRR7 ... 105 3e-22
ARR2_ARATH (Q9ZWJ9) Two-component response regulator ARR2 (Recei... 95 6e-19
ARRA_ARATH (O49397) Two-component response regulator ARR10 (Rece... 93 2e-18
ARR1_ARATH (Q940D0) Two-component response regulator ARR1 92 3e-18
ARRB_ARATH (Q9FXD6) Two-component response regulator ARR11 (Rece... 89 2e-17
ARRC_ARATH (P62598) Two-component response regulator ARR12 89 3e-17
ARRI_ARATH (Q9FGT7) Two-component response regulator ARR18 88 5e-17
ARRE_ARATH (Q8L9Y3) Two-component response regulator ARR14 74 1e-12
ARRK_ARATH (Q9LZJ8) Putative two-component response regulator ARR20 67 2e-10
ARR7_ARATH (Q9ZWS7) Two-component response regulator ARR7 64 1e-09
ARRF_ARATH (Q7G8V2) Two-component response regulator ARR15 63 2e-09
PCOR_ECOLI (Q47456) Transcriptional regulatory protein pcoR 62 3e-09
REGA_DICDI (Q23917) 3',5'-cyclic-nucleotide phosphodiesterase re... 62 5e-09
PRR4_ARATH (Q9FJ16) Putative two-component response regulator-li... 62 5e-09
ARR5_ARATH (Q9SB04) Two-component response regulator ARR5 (Respo... 61 7e-09
ARR3_ARATH (Q9ZWS9) Two-component response regulator ARR3 61 7e-09
>PRR1_ARATH (Q9LKL2) Two-component response regulator-like APRR1
(Pseudo-response regulator 1) (Timing of CAB expression
1) (ABI3-interacting protein 1)
Length = 618
Score = 512 bits (1319), Expect = e-145
Identities = 315/627 (50%), Positives = 386/627 (61%), Gaps = 107/627 (17%)
Query: 24 KSGDAFIDRSKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDI 83
K GD FIDRS+VRILLCD+D S EVFTLL +CSYQVT V+SARQVIDALNAEG IDI
Sbjct: 8 KGGDGFIDRSRVRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPDIDI 67
Query: 84 ILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRT 143
ILAE+DLP+ KGMK+L+Y++RDK+LRRIPVIMMS +DEVP+VVKCL+LGAADYLVKPLRT
Sbjct: 68 ILAEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRT 127
Query: 144 NELLNLWTHMWRRRRMLGLAEKNILSYDFDMVASDPSDANTNSTTLFSDDTDDRSKRSTN 203
NELLNLWTHMWRRRRMLGLAEKN+LSYDFD+V SD SD NTNST LFSDDTDDRS RSTN
Sbjct: 128 NELLNLWTHMWRRRRMLGLAEKNMLSYDFDLVGSDQSDPNTNSTNLFSDDTDDRSLRSTN 187
Query: 204 PE---AAQQEPEVNV----------------SISKAAAVIEELPGAQISECRPNVPGISD 244
P+ + QE E +V + + + AV P + P +
Sbjct: 188 PQRGNLSHQENEWSVATAPVHARDGGLGADGTATSSLAVTAIEPPLDHLAGSHHEPMKRN 247
Query: 245 RRTGNFSSGPKKSELRIGESSAFFTYVKATTLKSNVQEIAHVDNHATTQ----------- 293
FSS PKKS L+IGESSAFFTYVK+T L++N Q+ VD + +
Sbjct: 248 SNPAQFSSAPKKSRLKIGESSAFFTYVKSTVLRTNGQDPPLVDGNGSLHLHRGLAEKFQV 307
Query: 294 VRVEDMN-----------------------------------------QACARQRVNDLK 312
V E +N Q A + +N+ K
Sbjct: 308 VASEGINNTKQARRATPKSTVLRTNGQDPPLVNGNGSHHLHRGAAEKFQVVASEGINNTK 367
Query: 313 -THENQEMFESRSQ-EDLPSSNSFPDSFSIERSCTPPASVEVSQQKNFREEYYPQGSLYP 370
H ++ + SQ E L + S+P S+ERS T P S+E S +N++E +
Sbjct: 368 QAHRSRGTEQYHSQGETLQNGASYP--HSLERSRTLPTSME-SHGRNYQEGNMNIPQVAM 424
Query: 371 SNGSRGSKLEPSGMPAQHAYPYYYNSGVVNHVMLPSSAQLYQKNMQDIHSHANSSMIAQY 430
+ S+++ SG A +AYPYY + GV+N VM+ S+A M+ QY
Sbjct: 425 NRSKDSSQVDGSGFSAPNAYPYYMH-GVMNQVMMQSAA-----------------MMPQY 466
Query: 431 NH-LAQCSP-HANGMTSFPYY--PMNICLQPGQVS--------TPHSWPSLGSSGSCEVN 478
H + C P H NGMT +PYY PMN LQ Q+S HSW G+ S EV
Sbjct: 467 GHQIPHCQPNHPNGMTGYPYYHHPMNTSLQHSQMSLQNGQMSMVHHSWSPAGNPPSNEVR 526
Query: 479 LSKADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRKLSGVDVYLNGQ 538
++K DRRE AL+KF++KR RCFDKKIRYVNRKRLAERRPRV+GQFVRK++GV+V LNGQ
Sbjct: 527 VNKLDRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNVDLNGQ 586
Query: 539 PASADY-DEEEEEEEDNHVARDSSLED 564
P SADY DEEEEEEE+ RDSS +D
Sbjct: 587 PDSADYDDEEEEEEEEEEENRDSSPQD 613
>PRR3_ARATH (Q9LVG4) Two-component response regulator-like APRR3
(Pseudo-response regulator 3)
Length = 495
Score = 177 bits (450), Expect = 5e-44
Identities = 155/512 (30%), Positives = 227/512 (44%), Gaps = 94/512 (18%)
Query: 27 DAFIDRSKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILA 86
+ ++ +++LL ++D + V LL CSY+VT V + L E ID++L
Sbjct: 56 ERYLPVRSLKVLLVENDDSTRHIVTALLKNCSYEVTAVPDVLEAWRILEDEKSCIDLVLT 115
Query: 87 EVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNEL 146
EVD+P+ G LL + K L+ IPVIMMS+ D + +V KCL GA D+LVKP+R NEL
Sbjct: 116 EVDMPVHSGTGLLSKIMSHKTLKNIPVIMMSSHDSMVLVFKCLSNGAVDFLVKPIRKNEL 175
Query: 147 LNLWTHMWRRRRMLGLAEKNILSYDFDMVASDPSDANTNSTTLFSDDTDDRSKRSTNPEA 206
NLW H+WRR +S++ ++ K+S PE+
Sbjct: 176 KNLWQHVWRR---------------------------CHSSSGSGSESGIHDKKSVKPES 208
Query: 207 AQQEPEVNVSISKAAAVIEELPGAQISECRPNVPGISDRRTGNFSSGPKKSELRIGESSA 266
Q A IS+ N G S G S+ S+ G S+
Sbjct: 209 TQGSEN----------------DASISDEHRNESGSS----GGLSNQDGGSDNGSGTQSS 248
Query: 267 FFTYVKATTLKSNVQEIAHVDNHATTQVRVEDMNQACARQRVNDLKTHENQ-EMFESRSQ 325
+ T S + N T CA VN LK E+Q E + SQ
Sbjct: 249 WTKRASDTKSTSPSNQFPDAPNKKGT------YENGCA--HVNRLKEAEDQKEQIGTGSQ 300
Query: 326 EDLPSSNSFPDSFSIERSCTPPASVEVSQQKNFREEYYPQGSLYPSNGSRGSKLEPSGMP 385
+ S + +E++ SV+ ++ N +L N S G+ S P
Sbjct: 301 TGMSMSKKAEEPGDLEKNA--KYSVQALERNN-------DDTL---NRSSGNSQVESKAP 348
Query: 386 AQHAYPYYYNSGVVNHVMLPSSAQLYQKNMQDIHSHANSSMIAQYNHLAQCSPHANGMTS 445
+ N L S Q +K +D + ++++L+ S + NG TS
Sbjct: 349 SS------------NREDLQSLEQTLKKTREDRDYKVGDRSVLRHSNLSAFSKYNNGATS 396
Query: 446 FPYYPMNICLQPGQVSTPHSWP---SLGSSGSCEVNL----SKADR---REAALMKFKQK 495
P + + +PH P LGSS S + L S +DR REAALMKF+ K
Sbjct: 397 AKKAPE----ENVESCSPHDSPIAKLLGSSSSSDNPLKQQSSGSDRWAQREAALMKFRLK 452
Query: 496 RKDRCFDKKIRYVNRKRLAERRPRVRGQFVRK 527
RK+RCF+KK+RY +RK+LAE+RP V+GQF+RK
Sbjct: 453 RKERCFEKKVRYHSRKKLAEQRPHVKGQFIRK 484
>PRR5_ARATH (Q6LA42) Two-component response regulator-like APRR5
(Pseudo-response regulator 5)
Length = 558
Score = 120 bits (300), Expect = 1e-26
Identities = 76/229 (33%), Positives = 114/229 (49%), Gaps = 11/229 (4%)
Query: 14 RENNCGGANSKSGDAFIDRSKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDA 73
R+ + G + F+ + +R+LL + D + + + LL KCSY+V V + +
Sbjct: 29 RKKDAGVDGLVKWERFLPKIALRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEM 88
Query: 74 LNAEGQYIDIILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGA 133
L + + +D+IL EVDLP G LL + + IPVIMMS +D V V KC+ GA
Sbjct: 89 LKGKPESVDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSTQDSVNTVYKCMLKGA 148
Query: 134 ADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDMVASDPSDANTNSTT----- 188
ADYLVKPLR NEL NLW H+WRR+ L + ++ + A+ N++
Sbjct: 149 ADYLVKPLRRNELRNLWQHVWRRQTSLA---PDSFPWNESVGQQKAEGASANNSNGKRDD 205
Query: 189 -LFSDDTDDRSKRSTNPEAAQQEPEVNVSISKAAAVIEELPGAQISECR 236
+ S + D T PE + +V VS A + E +Q +E R
Sbjct: 206 HVVSGNGGDAQSSCTRPEMEGESADVEVSARDAVQM--ECAKSQFNETR 252
Score = 72.0 bits (175), Expect = 4e-12
Identities = 30/45 (66%), Positives = 42/45 (92%)
Query: 484 RREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRKL 528
+REAAL KF+ KRKDRC++KK+RY +RK+LAE+RPR++GQFVR++
Sbjct: 508 QREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVRQV 552
>PRR9_ARATH (Q8L500) Two-component response regulator-like APRR9
(Pseudo-response regulator 9)
Length = 468
Score = 113 bits (282), Expect = 2e-24
Identities = 53/130 (40%), Positives = 81/130 (61%)
Query: 27 DAFIDRSKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILA 86
+ ++ ++ +R+LL + D + + + LL KC Y+V V + L + ID+IL
Sbjct: 29 EKYLPKTVLRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNIDLILT 88
Query: 87 EVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNEL 146
E+DLP G LL + + + IPVIMMS++D + +V+KC+ GAADYL+KP+R NEL
Sbjct: 89 ELDLPSISGFALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNEL 148
Query: 147 LNLWTHMWRR 156
NLW H+WRR
Sbjct: 149 KNLWQHVWRR 158
Score = 76.3 bits (186), Expect = 2e-13
Identities = 34/46 (73%), Positives = 43/46 (92%)
Query: 484 RREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRKLS 529
+REAALMKF+ KRKDRCFDKK+RY +RK+LAE+RPRV+GQFVR ++
Sbjct: 416 QREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVN 461
>PRR7_ARATH (Q93WK5) Two-component response regulator-like APRR7
(Pseudo-response regulator 7)
Length = 727
Score = 105 bits (262), Expect = 3e-22
Identities = 75/260 (28%), Positives = 116/260 (43%), Gaps = 21/260 (8%)
Query: 2 ESEAEEILNLNSRENNCGG---------ANSKSGDAFIDRSKVRILLCDDDPKSSEEVFT 52
E E + ++ R + GG A + + F+ +R+LL ++D + V
Sbjct: 36 EEEKTNGITMDVRNGSSGGLQIPLSQQTAATVCWERFLHVRTIRVLLVENDDCTRYIVTA 95
Query: 53 LLVKCSYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPIKKGMKLLKYLSRDKELRRIP 112
LL CSY+V + Q L +IDI+L EV +P G+ LL + K R IP
Sbjct: 96 LLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLSGIGLLCKILNHKSRRNIP 155
Query: 113 VIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLG---------LA 163
VIMMS+ D + +V KCL GA D+LVKP+R NEL LW H+WRR +
Sbjct: 156 VIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHVWRRCQSSSGSGSESGTHQT 215
Query: 164 EKNILSYDFDMVASDPSDANTNSTTLFSDDTDDRSKRSTNPEAAQQEPEVNVSISKAAAV 223
+K++ S D ++ N + D S + +++ + V+V S A
Sbjct: 216 QKSVKSKSIKKSDQDSGSSDENENGSIGLNASDGSSDGSGAQSSWTKKAVDVDDSPRAVS 275
Query: 224 I---EELPGAQISECRPNVP 240
+ + AQ+ P P
Sbjct: 276 LWDRVDSTCAQVVHSNPEFP 295
Score = 85.9 bits (211), Expect = 3e-16
Identities = 101/373 (27%), Positives = 154/373 (41%), Gaps = 48/373 (12%)
Query: 175 VASDPSDANTNSTTL--FSDDTDDRSKRSTNPEAAQQEPEVNVSISKAAAVIEELPGAQI 232
V P D ++ S + +D K ++ +EPE + K E +I
Sbjct: 367 VGKGPLDLSSESPSSKQMHEDGGSSFKAMSSHLQDNREPEAPNTHLKTLDTNEA--SVKI 424
Query: 233 SECRPNVPGISDRRTGNFSSGP----KKSELRIGESSAFFTYVKATTLKS----NVQEIA 284
SE +V S R G G ++ LR E SAF Y A+ N+ +
Sbjct: 425 SEELMHVEHSSKRHRGTKDDGTLVRDDRNVLRRSEGSAFSRYNPASNANKISGGNLGSTS 484
Query: 285 HVDNHATTQVRVEDMNQACARQRVNDLKTHENQEMFESRSQEDLPSSNSFPDSFSIERSC 344
DN++ ++ + C H N + SN+F S + E +
Sbjct: 485 LQDNNSQDLIKKTEAAYDC----------HSNMNESLPHNHRSHVGSNNFDMSSTTENNA 534
Query: 345 TPPASVEVSQQKNFREEYYPQGSLYPSNGSRGSKLEPSGMPAQHAYPYYYNSGVVNHVML 404
F + P+ S S+ + S +P + + Y V L
Sbjct: 535 -------------FTKPGAPKVSSAGSSSVKHSSFQPLPCDHHNNHASYNLVHVAERKKL 581
Query: 405 P---SSAQLYQKNMQDIHSHANSSMIAQYNHLAQCS--PH--ANGMTSFPYYPMNICLQP 457
P S+ +Y + ++ ++ N S+ + S P+ +NGM + MN+
Sbjct: 582 PPQCGSSNVYNETIEGNNNTVNYSVNGSVSGSGHGSNGPYGSSNGMNAGG---MNMGSDN 638
Query: 458 GQVSTPHSWPSLGSSGSCEVNLS---KADRREAALMKFKQKRKDRCFDKKIRYVNRKRLA 514
G + S SGS NL+ K +REAAL KF+QKRK+RCF KK+RY +RK+LA
Sbjct: 639 GAGKNGNGDGSGSGSGSGSGNLADENKISQREAALTKFRQKRKERCFRKKVRYQSRKKLA 698
Query: 515 ERRPRVRGQFVRK 527
E+RPRVRGQFVRK
Sbjct: 699 EQRPRVRGQFVRK 711
>ARR2_ARATH (Q9ZWJ9) Two-component response regulator ARR2
(Receiver-like protein 5)
Length = 664
Score = 94.7 bits (234), Expect = 6e-19
Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 24/202 (11%)
Query: 19 GGANSKSGDAFIDRSKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEG 78
GG+NS D F + +R+L+ DDDP + +L+ C Y+VT A + L
Sbjct: 17 GGSNS---DPF--PANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNK 71
Query: 79 QYIDIILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLV 138
DI++++V +P G KLL+++ + +L PVIMMSA D +V+K + GA DYL+
Sbjct: 72 NGFDIVISDVHMPDMDGFKLLEHVGLEMDL---PVIMMSADDSKSVVLKGVTHGAVDYLI 128
Query: 139 KPLRTNELLNLWTHMWRRRRMLGLAEKNILSY----------DFDMVASDPSDANTNSTT 188
KP+R L N+W H+ R++R E N+ + D D DA+ NS++
Sbjct: 129 KPVRIEALKNIWQHVVRKKR----NEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSS 184
Query: 189 LFSDDTDDRSKRSTNPEAAQQE 210
+ ++ + RS R E +
Sbjct: 185 V--NEGNGRSSRKRKEEEVDDQ 204
>ARRA_ARATH (O49397) Two-component response regulator ARR10
(Receiver-like protein 4)
Length = 552
Score = 93.2 bits (230), Expect = 2e-18
Identities = 53/179 (29%), Positives = 94/179 (51%), Gaps = 9/179 (5%)
Query: 35 VRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPIKK 94
+R+L DDD + TLL +C Y VT A+ ++ L D+++++VD+P
Sbjct: 17 MRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVISDVDMPDMD 76
Query: 95 GMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMW 154
G KLL+ + + +L PVIM+SA + V+K ++ GA DYL+KP+R EL N+W H+
Sbjct: 77 GFKLLELVGLEMDL---PVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQHVV 133
Query: 155 RRRRMLGLAEKNILSYDFDMVASDPSDANTNSTTLFSDDTDDRSKRSTNPEAAQQEPEV 213
R+ ++ +KN + + + AN + ++ ++ + AQ++P V
Sbjct: 134 RKSKL----KKN--KSNVSNGSGNCDKANRKRKEQYEEEEEEERGNDNDDPTAQKKPRV 186
>ARR1_ARATH (Q940D0) Two-component response regulator ARR1
Length = 690
Score = 92.4 bits (228), Expect = 3e-18
Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 5/147 (3%)
Query: 12 NSRENNCGGANSKSGDAFIDRSKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVI 71
+S N GG + F S +R+L+ DDDP + +L C Y+VT A +
Sbjct: 16 SSSGRNQGGGGETVVEMF--PSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMAL 73
Query: 72 DALNAEGQYIDIILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRL 131
L DI++++V +P G KLL+++ + +L PVIMMSA D +V+K +
Sbjct: 74 SLLRKNKHGFDIVISDVHMPDMDGFKLLEHVGLEMDL---PVIMMSADDSKSVVLKGVTH 130
Query: 132 GAADYLVKPLRTNELLNLWTHMWRRRR 158
GA DYL+KP+R L N+W H+ R+RR
Sbjct: 131 GAVDYLIKPVRMEALKNIWQHVVRKRR 157
>ARRB_ARATH (Q9FXD6) Two-component response regulator ARR11
(Receiver-like protein 3)
Length = 521
Score = 89.4 bits (220), Expect = 2e-17
Identities = 47/123 (38%), Positives = 76/123 (61%), Gaps = 3/123 (2%)
Query: 35 VRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPIKK 94
+R+L+ DDDP + + +L KCSY+VT AR+ + L DI++++V++P
Sbjct: 11 LRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMPDMD 70
Query: 95 GMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMW 154
G KLL+++ + +L PVIMMS E V+K ++ GA DYL+KP+R EL +W H+
Sbjct: 71 GFKLLEHVGLELDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVL 127
Query: 155 RRR 157
R++
Sbjct: 128 RKK 130
>ARRC_ARATH (P62598) Two-component response regulator ARR12
Length = 596
Score = 89.0 bits (219), Expect = 3e-17
Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 8/183 (4%)
Query: 35 VRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPIKK 94
+R+L DDD + + +LL C Y VT A++ ++ L D+++++VD+P
Sbjct: 17 MRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDVDMPDMD 76
Query: 95 GMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMW 154
G KLL+ + + +L PVIM+SA + V+K + GA DYL+KP+R EL N+W H+
Sbjct: 77 GFKLLELVGLEMDL---PVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQHVV 133
Query: 155 R-----RRRMLGLAEKNILSYDFDMVASDPSDANTNSTTLFSDDTDDRSKRSTNPEAAQQ 209
R R +K S + + SDP++ N + D+ R N ++ Q
Sbjct: 134 RSRFDKNRGSNNNGDKRDGSGNEGVGNSDPNNGKGNRKRKDQYNEDEDEDRDDNDDSCAQ 193
Query: 210 EPE 212
+ +
Sbjct: 194 KKQ 196
>ARRI_ARATH (Q9FGT7) Two-component response regulator ARR18
Length = 635
Score = 88.2 bits (217), Expect = 5e-17
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 35 VRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPIKK 94
+R+L DD+P ++ LL++C Y VT +R+ ++ L D+++++V++P
Sbjct: 18 MRVLAVDDNPTCLRKLEELLLRCKYHVTKTMESRKALEMLRENSNMFDLVISDVEMPDTD 77
Query: 95 GMKLLKY-LSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHM 153
G KLL+ L D +PVIM+SA + V+K + GA DYLVKP+ EL N+W H
Sbjct: 78 GFKLLEIGLEMD-----LPVIMLSAHSDYDSVMKGIIHGACDYLVKPVGLKELQNIWHH- 131
Query: 154 WRRRRMLGLAEKNILSYDFDMVASDPSDANTNSTTLFSD------DTDDRSKRSTNPEAA 207
+ +KNI SY ++ SD+ +++ D D DD + + E +
Sbjct: 132 --------VVKKNIKSY-AKLLPPSESDSVPSASRKRKDKVNDSGDEDDSDREEDDGEGS 182
Query: 208 QQE 210
+Q+
Sbjct: 183 EQD 185
>ARRE_ARATH (Q8L9Y3) Two-component response regulator ARR14
Length = 382
Score = 73.6 bits (179), Expect = 1e-12
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Query: 33 SKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPI 92
S +RIL+ DDD + +L++ YQVT A + L D++L++V +P
Sbjct: 9 SGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLSDVHMPG 68
Query: 93 KKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTH 152
G LL+ + + +PVIMMS V+ + GA DYL+KP+R EL N+W H
Sbjct: 69 MNGYNLLQQVGLLE--MDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQH 126
Query: 153 MWRRR 157
+ RR+
Sbjct: 127 VVRRK 131
>ARRK_ARATH (Q9LZJ8) Putative two-component response regulator ARR20
Length = 426
Score = 66.6 bits (161), Expect = 2e-10
Identities = 54/215 (25%), Positives = 102/215 (47%), Gaps = 22/215 (10%)
Query: 27 DAFIDRSKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILA 86
+ F+ +S R+LL D SS + L+ + SYQVT S + + L ID+++
Sbjct: 34 EEFLTKSN-RVLLVGADSNSSLK--NLMTQYSYQVTKYESGEEAMAFLMKNKHEIDLVIW 90
Query: 87 EVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNEL 146
+ +P G+ L + + +L PV++MS + + V++ ++ GA D+LVKP+ +
Sbjct: 91 DFHMPDINGLDALNIIGKQMDL---PVVIMSHEYKKETVMESIKYGACDFLVKPVSKEVI 147
Query: 147 LNLWTHMWRRRRM---------LGLAEKNILSYDFDMVASDPSDANTNSTTLFSDDTDDR 197
LW H++R+R G E + YD D+ + ++N + D +++
Sbjct: 148 AVLWRHVYRKRMSKSGLDKPGESGTVESDPDEYD-DLEQDNLYESNEEGSKNTCDHKEEK 206
Query: 198 SKRSTNPEAAQQEPEVN----VSISKAAAVIEELP 228
S T Q PE++ V++ K ++ + P
Sbjct: 207 S--PTKKPRMQWTPELHHKFEVAVEKMGSLEKAFP 239
>ARR7_ARATH (Q9ZWS7) Two-component response regulator ARR7
Length = 206
Score = 63.5 bits (153), Expect = 1e-09
Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 13/176 (7%)
Query: 26 GDAFIDRSKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQY----- 80
GD + ++ +L DD + + LL S +VT V S + + L +G
Sbjct: 15 GDLTVTTPELHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGASNL 74
Query: 81 ----IDIILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADY 136
+++I+ + +P G LLK + R +PV++MS+++ +P + +CL+ GA ++
Sbjct: 75 KDLKVNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEF 134
Query: 137 LVKPLRTNELLNLWTHMWRRR----RMLGLAEKNILSYDFDMVASDPSDANTNSTT 188
L+KP++ ++ + + R ++L + K L D D +S D + ++
Sbjct: 135 LLKPVKLADVKRIKQLIMRNEAEECKILSHSNKRKLQEDSDTSSSSHDDTSIKDSS 190
>ARRF_ARATH (Q7G8V2) Two-component response regulator ARR15
Length = 206
Score = 63.2 bits (152), Expect = 2e-09
Identities = 48/183 (26%), Positives = 89/183 (48%), Gaps = 16/183 (8%)
Query: 34 KVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQY---------IDII 84
++ +L DD + + LL + +VT V S + + L +G +++I
Sbjct: 17 ELHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNGSSGLKDLKVNLI 76
Query: 85 LAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTN 144
+ + +P G +LLK + LR IPV++MS+++ P + +C+ GA ++L+KP++
Sbjct: 77 VTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEEFLLKPVKLA 136
Query: 145 ELLNLWTHMWR-----RRRMLGLAEKNILSYDFDMVASDPSDANTNSTTLFS--DDTDDR 197
++ L + R + L+ K IL D D S S ++++S+ S DD
Sbjct: 137 DVKRLKELIMRGGEAEEGKTKKLSPKRILQNDIDSSPSSSSTSSSSSSHDVSSLDDDTPS 196
Query: 198 SKR 200
SKR
Sbjct: 197 SKR 199
>PCOR_ECOLI (Q47456) Transcriptional regulatory protein pcoR
Length = 226
Score = 62.4 bits (150), Expect = 3e-09
Identities = 47/140 (33%), Positives = 69/140 (48%), Gaps = 4/140 (2%)
Query: 36 RILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPIKKG 95
RIL+ +D+ K+ + LV+ YQ + R + A + +GQY D+I+ +V LP G
Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAAS-KGQY-DLIILDVMLPFLDG 60
Query: 96 MKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 155
+++ L PV+ ++AKD V VK L LGA DYL+KP EL+ + R
Sbjct: 61 WQIISALRESGHEE--PVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLR 118
Query: 156 RRRMLGLAEKNILSYDFDMV 175
R R I DMV
Sbjct: 119 RARSQAATVCTIADMTVDMV 138
>REGA_DICDI (Q23917) 3',5'-cyclic-nucleotide phosphodiesterase regA
(EC 3.1.4.17) (PDEase regA)
Length = 793
Score = 61.6 bits (148), Expect = 5e-09
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 24/173 (13%)
Query: 9 LNLNSRENNCGGANSKSGDAFIDR-----------------SKVRILLCDDDPKSSEEVF 51
+N N+ E G N+ GD D+ SKVRIL+ DDD + +
Sbjct: 117 INNNNYEPLVNGHNNGFGDKLNDQPSPSSHRVSDFSDEYSPSKVRILVADDDDVQRKILN 176
Query: 52 TLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPIKKGMKLLKYLSRDKELRRI 111
LL K Y VT V + + +N Q D++L +V +P G LL+ ++ R I
Sbjct: 177 NLLKKFHYNVTLVPNGEIAWEYINKGQQKYDLVLTDVMMPHITGFDLLQRINDHPVHRHI 236
Query: 112 PVIMMSAKD-EVPIVVKCLRLGAADYLVKPLRTNELL-----NLWTHMWRRRR 158
PVI+MS + +++G D+L KP+ ELL + +W+RR+
Sbjct: 237 PVILMSGTAVDYKYANDTIKIGGQDFLTKPI-AKELLKKKIDTVLQSIWQRRK 288
>PRR4_ARATH (Q9FJ16) Putative two-component response regulator-like
APRR4 (Pseudo-response regulator 4)
Length = 292
Score = 61.6 bits (148), Expect = 5e-09
Identities = 48/188 (25%), Positives = 91/188 (47%), Gaps = 11/188 (5%)
Query: 35 VRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPIKK 94
+R+L+ D+DP + L K YQVT + + L D+ + +V+
Sbjct: 42 LRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQVN---NA 98
Query: 95 GMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMW 154
+ ++LS +P+I++S D V V K + GAADYL+KP+R +L ++ H+
Sbjct: 99 EGDIFRFLSEIGSEMDLPIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHLV 158
Query: 155 RRRRMLGLAEKNILSYDFDMVASDPSDANTNSTTLFSDDTDDRSKRSTNPEAAQQEPEVN 214
++ R +++++ + + A + S + +ST ++SKRS+ EA E + +
Sbjct: 159 KKMR----ERRSVVTGEAEKAAGEKSSSVGDSTI----RNPNKSKRSSCLEAEVNEEDRH 210
Query: 215 VSISKAAA 222
+A A
Sbjct: 211 DHNDRACA 218
>ARR5_ARATH (Q9SB04) Two-component response regulator ARR5 (Response
reactor 2)
Length = 184
Score = 61.2 bits (147), Expect = 7e-09
Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 10/125 (8%)
Query: 35 VRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQY----------IDII 84
+ +L DD + + LL S +VT V SA + + L +G+ I++I
Sbjct: 25 LHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSSVGFEDLKINLI 84
Query: 85 LAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTN 144
+ + +P G +LLK + R IPV++MS+++ +P + +CL GA D+L+KP++
Sbjct: 85 MTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLA 144
Query: 145 ELLNL 149
++ L
Sbjct: 145 DVKRL 149
>ARR3_ARATH (Q9ZWS9) Two-component response regulator ARR3
Length = 231
Score = 61.2 bits (147), Expect = 7e-09
Identities = 46/195 (23%), Positives = 89/195 (45%), Gaps = 22/195 (11%)
Query: 30 IDRSKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQY--------- 80
+D +V +L DD + LL S +VT V S + ++ L +
Sbjct: 28 LDSDQVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAAVEFDRLK 87
Query: 81 IDIILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKP 140
+D+I+ + +P G +LLK + + +PV++MS+++ + + +CL GA D+L+KP
Sbjct: 88 VDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLKP 147
Query: 141 LRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDMVASDPSDANTNSTTLFSDDT------ 194
++ ++ L +++ R ++ K L+ P + S+ SD T
Sbjct: 148 VKLADVKRLRSYLTRDVKVAAEGNKRKLT-----TPPPPPPLSATSSMESSDSTVESPLS 202
Query: 195 --DDRSKRSTNPEAA 207
DD + +PE+A
Sbjct: 203 MVDDEDSLTMSPESA 217
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.313 0.129 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,250,521
Number of Sequences: 164201
Number of extensions: 2806223
Number of successful extensions: 8654
Number of sequences better than 10.0: 319
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 8380
Number of HSP's gapped (non-prelim): 337
length of query: 565
length of database: 59,974,054
effective HSP length: 115
effective length of query: 450
effective length of database: 41,090,939
effective search space: 18490922550
effective search space used: 18490922550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0093b.4