BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0091b.10
         (353 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain...    72  2e-12
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran...    58  3e-08
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810...    48  4e-05
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein     43  0.001
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240...    40  0.007
YGP0_YEAST (P53115) Hypothetical 171.5 kDa helicase in NUT1-ARO2...    31  5.4

>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
            Copia VLP protein; Copia protease (EC 3.4.23.-)]
          Length = 1409

 Score = 72.0 bits (175), Expect = 2e-12
 Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 20/146 (13%)

Query: 65   LALSIEYLKDEVFMYQRTYIAKVLKGFYMDKSCPLCTLLVLRSLNVNKDPFRP*EKNEEL 124
            + + IE  +D++++ Q  Y+ K+L  F M+    + T L             P + N EL
Sbjct: 1124 IGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPL-------------PSKINYEL 1170

Query: 125  L----DPEVPYLSAIKALLYLASHTRLDISFAINLLARYSSSPTQRHW-NGKQVFRYLKG 179
            L    D   P  S I  L+Y+   TR D++ A+N+L+RYSS      W N K+V RYLKG
Sbjct: 1171 LNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKG 1230

Query: 180  ALDMSLFFP--FMSKLNLIGYADAGY 203
             +DM L F      +  +IGY D+ +
Sbjct: 1231 TIDMKLIFKKNLAFENKIIGYVDSDW 1256


>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
            transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
            Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1328

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 42/128 (32%), Positives = 68/128 (52%), Gaps = 4/128 (3%)

Query: 75   EVFMYQRTYIAKVLKGFYMDKSCPLCTLLVLRSLNVNKDPFRP*EKNEELLDPEVPYLSA 134
            ++++ Q  YI +VL+ F M  + P+ T L    L ++K    P    E+    +VPY SA
Sbjct: 1057 KLWLSQEKYIERVLERFNMKNAKPVSTPLA-GHLKLSKK-MCPTTVEEKGNMAKVPYSSA 1114

Query: 135  IKALLYLASHTRLDISFAINLLARYSSSPTQRHWNG-KQVFRYLKGALDMSLFFPFMSKL 193
            + +L+Y    TR DI+ A+ +++R+  +P + HW   K + RYL+G     L F     +
Sbjct: 1115 VGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI 1174

Query: 194  NLIGYADA 201
             L GY DA
Sbjct: 1175 -LKGYTDA 1181


>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
           (ORF240b)
          Length = 240

 Score = 47.8 bits (112), Expect = 4e-05
 Identities = 42/146 (28%), Positives = 71/146 (47%), Gaps = 17/146 (11%)

Query: 62  NFCLALSIEYLKDEVFMYQRTYIAKVLKGFYMDKSCPLCTLLVLR---SLNVNKDPFRP* 118
           ++ L + I+     +F+ Q  Y  ++L    M    P+ T L L+   S++  K P    
Sbjct: 40  HYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP---- 95

Query: 119 EKNEELLDPEVPYLSAIKALLYLASHTRLDISFAINLLARYSSSPTQRHWNG-KQVFRYL 177
                  DP   + S + AL YL   TR DIS+A+N++ +    PT   ++  K+V RY+
Sbjct: 96  -------DPS-DFRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYV 146

Query: 178 KGALDMSLFFPFMSKLNLIGYADAGY 203
           KG +   L+    SKLN+  + D+ +
Sbjct: 147 KGTIFHGLYIHKNSKLNVQAFCDSDW 172


>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
          Length = 308

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 130 PYLSAIKALLYLASHTRLDISFAINLLARYSSSPTQRHW-NGKQVFRYLKGALDMSLFFP 188
           PY S +  LL+ A+  R DIS+ ++LL+R+   P   H  + ++V RYL     M L + 
Sbjct: 182 PYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYR 241

Query: 189 FMSKLNLIGYADAGY 203
             S++ L  Y DA +
Sbjct: 242 SGSQVALTVYCDASH 256


>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
           (ORF111a)
          Length = 111

 Score = 40.4 bits (93), Expect = 0.007
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 145 TRLDISFAINLLARYSS-SPTQRHWNGKQVFRYLKGALDMSLFFPFMSKLNLIGYADAGY 203
           TR D++FA+N L+++SS S T +     +V  Y+KG +   LF+   S L L  +AD+ +
Sbjct: 6   TRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDW 65

Query: 204 LS 205
            S
Sbjct: 66  AS 67


>YGP0_YEAST (P53115) Hypothetical 171.5 kDa helicase in NUT1-ARO2
            intergenic region
          Length = 1489

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)

Query: 72   LKDEVFMYQRTYIAKVLKGFYMDKSCPLCTLLVLRSLNVNKDPFRP*EKNEELLDPEVPY 131
            L  E   Y+R Y+  + +G++ + S P  T+ VL S +V          N EL DP +  
Sbjct: 1191 LNVEKHAYEREYLNCIQRGYHPNVSAPPVTIEVLGSSHVTN------SINNELFDPLISQ 1244

Query: 132  -LSAIKALLYLASHTRLDI 149
             LS I A+     H +  I
Sbjct: 1245 ALSDIPAITQYNMHVKKGI 1263


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.357    0.160    0.555 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,457,339
Number of Sequences: 164201
Number of extensions: 1240247
Number of successful extensions: 5215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5208
Number of HSP's gapped (non-prelim): 6
length of query: 353
length of database: 59,974,054
effective HSP length: 111
effective length of query: 242
effective length of database: 41,747,743
effective search space: 10102953806
effective search space used: 10102953806
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 66 (30.0 bits)