BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0089b.6
         (647 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TRMD_LEPIN (Q8CXS8) tRNA (Guanine-N(1)-)-methyltransferase (EC 2...    33  1.8
ZSW3_MOUSE (Q8CFL8) Zinc finger SWIM domain containing protein 3       33  3.0

>TRMD_LEPIN (Q8CXS8) tRNA (Guanine-N(1)-)-methyltransferase (EC
           2.1.1.31) (M1G-methyltransferase) (tRNA [GM37]
           methyltransferase)
          Length = 231

 Score = 33.5 bits (75), Expect = 1.8
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 540 GIPFRHEIAAISHNGQKPEDFVHAYYRRAAYRATYEHLV 578
           GIPF   IA     G KP  F+  YY    +R T EHLV
Sbjct: 88  GIPFNQSIAMDLKKGGKPLTFISGYYEGVDHRVT-EHLV 125


>ZSW3_MOUSE (Q8CFL8) Zinc finger SWIM domain containing protein 3
          Length = 695

 Score = 32.7 bits (73), Expect = 3.0
 Identities = 25/93 (26%), Positives = 43/93 (45%), Gaps = 15/93 (16%)

Query: 492 KWEI-QMTSHLIPQC---CG*DMFEVKHIVSHDQFIVDLKKHTCMCNFWELVGIPFRHEI 547
           +WE+ Q ++HL+ +        + E  H VS D         +C C+F +   +P RH +
Sbjct: 512 EWEVVQNSTHLVDEAGSSVAVQLLENSHQVSKDGC-------SCSCSFQQCYHLPCRHIL 564

Query: 548 AAISHNGQKPEDFVHAYYRRAAYRATYEHLVSP 580
           A + H  Q+P        R   ++  Y+HL+ P
Sbjct: 565 ALL-HTSQQPVGEAMVCCR---WQKKYQHLLDP 593


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.341    0.148    0.503 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,312,548
Number of Sequences: 164201
Number of extensions: 2796997
Number of successful extensions: 7555
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7555
Number of HSP's gapped (non-prelim): 2
length of query: 647
length of database: 59,974,054
effective HSP length: 117
effective length of query: 530
effective length of database: 40,762,537
effective search space: 21604144610
effective search space used: 21604144610
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 69 (31.2 bits)