BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0087.11
         (146 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YPJD_BACSU (P42979) Hypothetical protein ypjD                          37  0.015
SYT_CHLPN (Q9Z7A0) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threon...    30  1.4
SYT_CHLCV (Q821I3) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threon...    30  2.4
MUTA_PROFR (P11652) Methylmalonyl-CoA mutase small subunit (EC 5...    30  2.4
STE7_CANAL (P46599) Serine/threonine-protein kinase STE7 homolog...    29  3.1
CUDA_DICDI (O00841) Putative transcriptional regulator cudA            29  4.1
YABN_BACSU (P37556) Hypothetical protein yabN                          28  5.3
VCLA_PEA (P02855) Provicilin (Type A) (Fragment)                       28  5.3
XYL1_CANTE (O74237) NAD(P)H-dependent D-xylose reductase (EC 1.1...    28  9.1
TRUA_BARQU (Q6G1G9) tRNA pseudouridine synthase A (EC 4.2.1.70) ...    28  9.1

>YPJD_BACSU (P42979) Hypothetical protein ypjD
          Length = 111

 Score = 37.0 bits (84), Expect = 0.015
 Identities = 25/69 (36%), Positives = 38/69 (54%), Gaps = 5/69 (7%)

Query: 36  YHSPRNLLLALVGEVGELS-EIFQWKGEVARGLPNWSCDDKEHLEEELSDVLLYLVRLAD 94
           Y SP  ++  L  E+GEL+ E+    GE     P  + +D + +EEE+ DVL  LV LA+
Sbjct: 24  YFSPLAMMARLTEELGELAREVNHRYGEK----PKKATEDDKSMEEEIGDVLFVLVCLAN 79

Query: 95  VCGLDLGQA 103
              + L +A
Sbjct: 80  SLDISLEEA 88


>SYT_CHLPN (Q9Z7A0) Threonyl-tRNA synthetase (EC 6.1.1.3)
           (Threonine--tRNA ligase) (ThrRS)
          Length = 635

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 19/54 (35%), Positives = 27/54 (49%)

Query: 91  RLADVCGLDLGQAALAKIVKNAQKYPVTSAINNGNSKTGEKTTAVVKIDNQRIN 144
           RL  V  LD    +++K ++NAQ   V   I  G+ +  E   AV   DN+ IN
Sbjct: 558 RLGLVVTLDDSSESVSKKIRNAQNMQVNYMITLGDHEINENVLAVRTRDNRVIN 611


>SYT_CHLCV (Q821I3) Threonyl-tRNA synthetase (EC 6.1.1.3)
           (Threonine--tRNA ligase) (ThrRS)
          Length = 635

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query: 91  RLADVCGLDLGQAALAKIVKNAQKYPVTSAINNGNSKTGEKTTAVVKIDNQRINTM 146
           +L  V  +D    +++K ++NAQ   V   +  G+ +  E T A+   DN+ +N M
Sbjct: 558 KLGLVVTVDDSNESVSKKIRNAQNMQVNYMVTLGDREIEENTLAIRTRDNRVLNAM 613


>MUTA_PROFR (P11652) Methylmalonyl-CoA mutase small subunit (EC
           5.4.99.2) (MCB-beta)
          Length = 637

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 76  EHLEEELSDVLLYLVRLADVCGLDLGQA--ALAKIVKNAQKYPVTSAINNG 124
           EHL+E LSDVLL + ++      D G A  AL  + + + K     A+N G
Sbjct: 147 EHLDEVLSDVLLEMTKVEVFSRYDQGAAAEALVSVYERSDKPAKDLALNLG 197


>STE7_CANAL (P46599) Serine/threonine-protein kinase STE7 homolog
           (EC 2.7.1.37)
          Length = 589

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 26/97 (26%), Positives = 42/97 (42%), Gaps = 1/97 (1%)

Query: 18  QDLSKRLAEFAEVRGWDQYHSPRNLLLALVGEVGELSEIFQWKGEVARGLPNWSCDDKEH 77
           ++L+  LA      G   Y SP  +     G   ++        E+A G+P WS DD  +
Sbjct: 397 RELTNSLAMADTFVGTSMYMSPERIQGLDYGVKSDVWSTGLMLIELASGVPVWSEDDNNN 456

Query: 78  LEEELSDVLLYLVRLADVCGLDLGQAALAKIVKNAQK 114
            ++E  +   Y VR   +     GQ + ++  KN QK
Sbjct: 457 DDDEDDEDDAY-VRQGSIAAERNGQNSPSRSRKNKQK 492


>CUDA_DICDI (O00841) Putative transcriptional regulator cudA
          Length = 791

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 12/27 (44%), Positives = 16/27 (58%)

Query: 118 TSAINNGNSKTGEKTTAVVKIDNQRIN 144
           TS+ NN N+   E T  +VKI+N   N
Sbjct: 432 TSSCNNNNNNNNENTEHIVKIENTECN 458


>YABN_BACSU (P37556) Hypothetical protein yabN
          Length = 489

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 19/87 (21%)

Query: 29  EVRG-----WDQYHSPRNLLLALVGEVGELSEIFQWKGEVARGLPNWSCDDKEHLEEELS 83
           E+RG     WD+  + ++L   ++ E  EL E                 +D +H+ EEL 
Sbjct: 242 ELRGPNGCPWDKKQTHQSLKQYMIEECYELLEAIDE-------------EDTDHMIEELG 288

Query: 84  DVLLYLVRLADVCGLDLGQAALAKIVK 110
           DVLL ++  A + G D G   +  ++K
Sbjct: 289 DVLLQVLLHAQI-GEDEGYFTIDDVIK 314


>VCLA_PEA (P02855) Provicilin (Type A) (Fragment)
          Length = 275

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 33/136 (24%), Positives = 56/136 (40%), Gaps = 7/136 (5%)

Query: 13  RDVSLQDLS--KRLAEFAEVRGWDQYHSPRNLLLALVGEVGELSEIFQWKGEVARGLPNW 70
           ++  LQDL       E  E   W  +++ R +++  V E     E+   + E  +GL   
Sbjct: 89  KNPQLQDLDIFVNYVEIKEGSLWLPHYNSRAIVIVTVNEGKGDFELVGQRNENQQGLREE 148

Query: 71  SCDDKEHLEEEL-SDVLLYLVRL--ADVCGLDLGQ--AALAKIVKNAQKYPVTSAINNGN 125
             +++E  EEE  + V  Y  +L   DV  +  G   A  A    N   + + +  N  N
Sbjct: 149 DDEEEEQREEETKNQVQSYKAKLTPGDVFVIPAGHPVAVRASSNLNLLGFGINAENNQRN 208

Query: 126 SKTGEKTTAVVKIDNQ 141
              GE+   + +I  Q
Sbjct: 209 FLAGEEDNVISQIQKQ 224


>XYL1_CANTE (O74237) NAD(P)H-dependent D-xylose reductase (EC
           1.1.1.-) (XR)
          Length = 322

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 14/44 (31%), Positives = 22/44 (49%)

Query: 10  DGARDVSLQDLSKRLAEFAEVRGWDQYHSPRNLLLALVGEVGEL 53
           DG +    + L KR   F   + W+ YH P+N+  AL   + +L
Sbjct: 60  DGVKRAIDEGLVKREEIFLTSKLWNNYHDPKNVETALNKTLADL 103


>TRUA_BARQU (Q6G1G9) tRNA pseudouridine synthase A (EC 4.2.1.70)
           (Pseudouridylate synthase I) (Pseudouridine synthase I)
           (Uracil hydrolyase)
          Length = 247

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 101 GQAALAKIVKNAQKYPVTSAINNGNSKTGEKTTAVVKIDN 140
           GQ A    +KN Q Y V  A+N    K GE+  AV+ + N
Sbjct: 59  GQVAHVDFIKNWQTYTVRDALNAYLQKQGEE-IAVLNVQN 97


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.314    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,632,719
Number of Sequences: 164201
Number of extensions: 580220
Number of successful extensions: 1117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1111
Number of HSP's gapped (non-prelim): 10
length of query: 146
length of database: 59,974,054
effective HSP length: 100
effective length of query: 46
effective length of database: 43,553,954
effective search space: 2003481884
effective search space used: 2003481884
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)