BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0086.17
(1019 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 526 e-149
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 374 e-103
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 162 4e-39
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 148 6e-35
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 113 3e-24
YJZ9_YEAST (P47100) Transposon Ty1 protein B 110 3e-23
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 109 3e-23
YMU0_YEAST (Q04670) Transposon Ty1 protein B 108 7e-23
YMD9_YEAST (Q03434) Transposon Ty1 protein B 107 2e-22
YMT5_YEAST (Q04214) Transposon Ty1 protein B 106 3e-22
YME4_YEAST (Q04711) Transposon Ty1 protein B 105 5e-22
YJZ7_YEAST (P47098) Transposon Ty1 protein B 105 5e-22
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 97 2e-19
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 66 5e-10
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 53 4e-06
M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710... 53 5e-06
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 50 4e-05
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 49 7e-05
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 49 9e-05
POL_FIVSD (P19028) Pol polyprotein [Contains: Protease (Retropep... 49 9e-05
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 526 bits (1356), Expect = e-149
Identities = 339/1053 (32%), Positives = 552/1053 (52%), Gaps = 59/1053 (5%)
Query: 3 WYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICVDSSP----CIDNV 58
W +D+ S H T R +F G V G KI G G IC+ ++ + +V
Sbjct: 294 WVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDV 353
Query: 59 LLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGS-VLFNSKRKNNIYKIR--LSE 115
V L NL+S L GY+ F + R GS V+ + +Y+ + +
Sbjct: 354 RHVPDLRMNLISGIALDRDGYESYFANQKWRLTK---GSLVIAKGVARGTLYRTNAEICQ 410
Query: 116 LEAQNVKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFSSDALCEACQKD 175
E + +SV+ +WH+R+GH+S + + L+K +L+ K ++ C+ C
Sbjct: 411 GELNAAQDEISVD----LWHKRMGHMSEKGLQILAKKSLIS---YAKGTTVKPCDYCLFG 463
Query: 176 KFTKVHFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRK 235
K +V F+ + + L+L++ D+ GP++ ES+GG +Y + +DD SR WV L K
Sbjct: 464 KQHRVSFQTSSERKLNI-LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTK 522
Query: 236 DESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*N 295
D+ VF F A V+ E ++ R+RSD+GGE+ + +FE S+GI H+ + P TPQ N
Sbjct: 523 DQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHN 582
Query: 296 GVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIK 355
GV ER NRT+ E R+ML+ + K FW EAV T CY+ NR P+ + +W N +
Sbjct: 583 GVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKE 642
Query: 356 PNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHV 415
+ S+ FGC + K++ K D KS C+ +GY D G+R ++ K + S V
Sbjct: 643 VSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDV 702
Query: 416 RFDD---KLDSDQSKLVEK--------FADLSINVSDKGKAPEEAEPEEEEPEE--EAGP 462
F + + +D S+ V+ S N + +E + E+P E E G
Sbjct: 703 VFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGE 762
Query: 463 S-DSQSQKKSRITAAHPKELILGNKDEPVRTRSAFRPSEETLLSLKGLMSLIEPKSIDEA 521
D ++ T + L + P R S PS E +L + EP+S+ E
Sbjct: 763 QLDEGVEEVEHPTQGEEQHQPLRRSERP-RVESRRYPSTEYVL----ISDDREPESLKEV 817
Query: 522 LQ--DKDWIL-AMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKAR 578
L +K+ ++ AM+EE+ KN + LV+ P+ + KWVF+ K + +VR KAR
Sbjct: 818 LSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKAR 877
Query: 579 LVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVY 638
LV +G+ Q++GID+ E F+PV ++ +++ ++S + + ++ + Q+DVK+AFL+G + EE+Y
Sbjct: 878 LVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIY 937
Query: 639 VHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTY 698
+ QP GF+ V KL KSLYGLKQAPR WY + SF+ +++ D ++ K +
Sbjct: 938 MEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRF 997
Query: 699 -KDDILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQV--DQTPEG 755
+++ +I+ +YVDD++ ++ L + + F+M +G + +G+++ ++T
Sbjct: 998 SENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRK 1057
Query: 756 TYIHQSKYTKELLKKFNMTELVIAKTP----------MHPTCILEKEDASGKVCQKLYRG 805
++ Q KY + +L++FNM TP M PT + EK G + + Y
Sbjct: 1058 LWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEK----GNMAKVPYSS 1113
Query: 806 MIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTSE 864
+GSL+Y + +RPDI +V + +RF +P + H AVK ILRYL+G+T L + S+
Sbjct: 1114 AVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF-GGSD 1172
Query: 865 YKLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICST 924
L GY DAD GD RKS++G +SW SK Q +ALST EAEYI A
Sbjct: 1173 PILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGK 1232
Query: 925 QMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 984
+M+W+K L++ + + +YCD+ +AI LSKN + H+R KHI+V+YH+IR+ V L
Sbjct: 1233 EMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESL 1292
Query: 985 LLKFVDIDHQWADIFTKPLAEDRFNFILKNLNM 1017
+ + + AD+ TK + ++F + + M
Sbjct: 1293 KVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 374 bits (960), Expect = e-103
Identities = 215/597 (36%), Positives = 343/597 (57%), Gaps = 32/597 (5%)
Query: 440 SDKGKAPEEAEPEEEEPEEEAGPSDSQSQKKSRITAAHPKEL------------ILGNKD 487
S+K E + + ++ E+ S + ++ + TA H KE+ I+ +
Sbjct: 799 SNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRS 858
Query: 488 EPVRTRSAFRPSEE------TLLSLKGLMSLIEPKSIDEALQDKD---WILAMEEELNQF 538
E ++T+ +EE +L+ + + + P S DE D W A+ ELN
Sbjct: 859 ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDV-PNSFDEIQYRDDKSSWEEAINTELNAH 917
Query: 539 SKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAP 598
N+ W++ K+P++ +++ ++WVF K NE G+ +R KARLVA+G++Q+ IDY ETFAP
Sbjct: 918 KINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAP 977
Query: 599 VARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPGFKDEKNPDHVFKLK 658
VAR+ + + ++S + +N+ +HQMDVK+AFLNG + EE+Y+ P G N D+V KL
Sbjct: 978 VARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLN 1035
Query: 659 KSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFC--KTYKDDILIVQIYVDDIIFGS 716
K++YGLKQA R W+E L E EFV VD ++ K ++ + V +YVDD++ +
Sbjct: 1036 KAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIAT 1095
Query: 717 ANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNMTEL 776
+ F + +F M+ + E+K+F+GI+++ + Y+ QS Y K++L KFNM
Sbjct: 1096 GDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENC 1155
Query: 777 VIAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLY-LTASRPDILFSVHLCARFQSDPR 835
TP+ P+ I + S + C R +IG L+Y + +RPD+ +V++ +R+ S
Sbjct: 1156 NAVSTPL-PSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNN 1214
Query: 836 ETHLTAVKRILRYLKGSTNLGLMYKK--TSEYKLSGYCDADYVGDRTERKSTSGNC-*FL 892
+KR+LRYLKG+ ++ L++KK E K+ GY D+D+ G +RKST+G
Sbjct: 1215 SELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMF 1274
Query: 893 GSNLVSWASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQLEDYQI-LESNIPIYCDNTA 951
NL+ W +KRQ+++A S+ EAEY+ + LW+K L I LE+ I IY DN
Sbjct: 1275 DFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQG 1334
Query: 952 AISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAEDRF 1008
IS++ NP H RAKHI++KYHF R+ VQ V+ L+++ ++Q ADIFTKPL RF
Sbjct: 1335 CISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARF 1391
Score = 174 bits (442), Expect = 8e-43
Identities = 120/411 (29%), Positives = 210/411 (50%), Gaps = 24/411 (5%)
Query: 5 LDSGCSRHMTGERRMFQE-LKLKPEGKVGFGGNEKGKIV-----GTGTICVDSSPCIDNV 58
LDSG S H+ + ++ + +++ P K+ ++G+ + G + D +++V
Sbjct: 291 LDSGASDHLINDESLYTDSVEVVPPLKIAVA--KQGEFIYATKRGIVRLRNDHEITLEDV 348
Query: 59 LLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEA 118
L NL+S+ +L + G + F+ KS +S+ V+ NS NN+ I +A
Sbjct: 349 LFCKEAAGNLMSVKRLQEAGMSIEFD-KSGVTISKNGLMVVKNSGMLNNVPVINF---QA 404
Query: 119 QNVKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRG---LPTLKFSSDALCEACQKD 175
++ N +WH R GH+S K+ ++ + N+ L L+ S + +CE C
Sbjct: 405 YSINAKHKNNFR--LWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCE-ICEPCLNG 461
Query: 176 KFTKVHFKA-KNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSR 234
K ++ FK K+ RPL ++H D+ GP+ ++ K Y ++ VD ++ + +
Sbjct: 462 KQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKY 521
Query: 235 KDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ* 294
K + ++F F+A+ + ++V + D+G E+ +++ GI++ + P TPQ
Sbjct: 522 KSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQL 581
Query: 295 NGVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPIL--NKTRYELWK 352
NGV ER RT+ E ARTM+ + K FW EAV T Y+ NRI R ++ +KT YE+W
Sbjct: 582 NGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWH 641
Query: 353 NIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYN 403
N KP + + FG YV + K++ KFD KS K + +GY GF+ ++
Sbjct: 642 NKKPYLKHLRVFGATVYV-HIKNKQGKFDDKSFKSIFVGY--EPNGFKLWD 689
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 162 bits (410), Expect = 4e-39
Identities = 97/309 (31%), Positives = 167/309 (53%), Gaps = 17/309 (5%)
Query: 622 MDVKSAFLNGYISEEVYVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLE 681
MDV +AFLN + E +YV QPPGF +E+NPD+V++L +YGLKQAP W E +++ L +
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 682 NEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGEL 741
F R + + L+ ++ D + + +YVDD++ + + + + + + M +G++
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 742 KYFMGIQVDQTPEG-------TYIHQSKYTKELLKKFNMTELVIAKT-PMHPTCILEKED 793
F+G+ + Q+ G YI ++ E + F +T+ + + P+ T +D
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESE-INTFKLTQTPLCNSKPLFETTSPHLKD 179
Query: 794 ASGKVCQKLYRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGS 852
+ Y+ ++G LL+ RPDI + V L +RF +PR HL + +R+LRYL +
Sbjct: 180 ITP------YQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTT 233
Query: 853 TNLGLMYKKTSEYKLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKR-QSTIALST 911
++ L Y+ S+ L+ YCDA + ST G L V+W+SK+ + I + +
Sbjct: 234 RSMCLKYRSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPS 293
Query: 912 AEAEYIPAA 920
EAEYI A+
Sbjct: 294 TEAEYITAS 302
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 148 bits (374), Expect = 6e-35
Identities = 72/222 (32%), Positives = 126/222 (56%), Gaps = 1/222 (0%)
Query: 707 IYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKE 766
+YVDDI+ ++ L + + F M +G + YF+GIQ+ P G ++ Q+KY ++
Sbjct: 5 LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64
Query: 767 LLKKFNMTELVIAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTASRPDILFSVHL 826
+L M + TP+ P + + +R ++G+L YLT +RPDI ++V++
Sbjct: 65 ILNNAGMLDCKPMSTPL-PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 123
Query: 827 CARFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTSEYKLSGYCDADYVGDRTERKSTS 886
+ +P +KR+LRY+KG+ GL K S+ + +CD+D+ G + R+ST+
Sbjct: 124 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 183
Query: 887 GNC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICSTQMLW 928
G C FLG N++SW++KRQ T++ S+ E EY A+ + ++ W
Sbjct: 184 GFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 113 bits (282), Expect = 3e-24
Identities = 117/431 (27%), Positives = 191/431 (44%), Gaps = 35/431 (8%)
Query: 64 LTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RLSE 115
+ ++LLS+S+LA++ F + + + + DG+VL + + Y + +S+
Sbjct: 518 IAYDLLSLSELANQNITACFTRNT---LERSDGTVLAPIVKHGDFYWLSKKYLIPSHISK 574
Query: 116 LEAQNVKCLLSVNE-EQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKF----SSDALCE 170
L NV SVN+ + HR LGH + R I + K N V L +S C
Sbjct: 575 LTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCP 634
Query: 171 ACQKDKFTKV-HFKAKNVV--STSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWT 227
C K TK H K + + P + LH D+FGPV Y + D+ +R+
Sbjct: 635 DCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQ 694
Query: 228 WVKFL-SRKDESHA-VFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHD 285
WV L R++ES VF++ +A ++N+ R++ ++ D G E+ N F + GI
Sbjct: 695 WVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITAC 754
Query: 286 FSSPRTPQ*NGVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNK 345
+++ + +GV ER NRTL RT+L +G+ + W AV I+N + V P +K
Sbjct: 755 YTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSL-VSPKNDK 813
Query: 346 TRYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGY----SDRSKGFRF 401
+ + +I+ PFG V N H D+K + GY S S G+
Sbjct: 814 SARQHAGLAGLDITTILPFGQPVIVNN-----HNPDSKIHPRGIPGYALHPSRNSYGYII 868
Query: 402 YNTD-AKTIEESIHVRFDD---KLDSDQSKLVEKFADLSINVSDKGKAPEEAEPEEEEPE 457
Y KT++ + +V D KLD + DL+ + E+ E E+ +
Sbjct: 869 YLPSLKKTVDTTNYVILQDKQSKLDQFNYDTLTFDDDLNRLTAHNQSFIEQNETEQSYDQ 928
Query: 458 EEAGPSDSQSQ 468
D QS+
Sbjct: 929 NTESDHDYQSE 939
Score = 108 bits (270), Expect = 7e-23
Identities = 130/570 (22%), Positives = 253/570 (43%), Gaps = 71/570 (12%)
Query: 488 EPVRTRSAFRPSEETLLSLKGLMSLIEPKSI---DEAL------QDKD-WILAMEEELNQ 537
EP R++ + ++KG+ S+ ++ DEA+ ++KD ++ A +E++Q
Sbjct: 1220 EPPRSKKRIN----LIAAIKGVKSIKPVRTTLRYDEAITYNKDNKEKDRYVEAYHKEISQ 1275
Query: 538 FSKNDVWSLVK-------KPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGI 590
K + W K P+ V I + ++F N+K D +KAR VA+G Q
Sbjct: 1276 LLKMNTWDTNKYYDRNDIDPKKV--INSMFIF----NKKRDGT-HKARFVARGDIQHPDT 1328
Query: 591 DYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPP--GFKDE 648
++ + A+ +S +++++ + Q+D+ SA+L I EE+Y+ PP G D+
Sbjct: 1329 YDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELYIRPPPHLGLNDK 1388
Query: 649 KNPDHVFKLKKSLYGLKQAPRAWYERLSSFLL---ENEFVRGKVDTTLFCKTYKDDILIV 705
+ +L+KSLYGLKQ+ WYE + S+L+ + + VRG + +K+ + +
Sbjct: 1389 -----LLRLRKSLYGLKQSGANWYETIKSYLINCCDMQEVRG------WSCVFKNSQVTI 1437
Query: 706 QIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTK 765
++VDD+I S + K+ ++ +++ ++ + IQ D +SKY K
Sbjct: 1438 CLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRSKYMK 1497
Query: 766 ELLKKFNMTELVIAKTPMHP------------------TCILEKEDASGKVCQKLYRGMI 807
++K +L P++P +++++ KV + + +I
Sbjct: 1498 LGMEKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDELEIDEDEYKEKVHE--MQKLI 1555
Query: 808 GSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTS--- 863
G Y+ R D+L+ ++ A+ P L +++++ + + L++ K
Sbjct: 1556 GLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTK 1615
Query: 864 -EYKLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAIC 922
+ KL DA Y G++ KS GN L ++ S + S ST EAE +
Sbjct: 1616 PDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEA 1674
Query: 923 STQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS-RAKHIEVKYHFIRDYVQK 981
+ + H +++ + D+ + IS+ K+ R + K +RD V
Sbjct: 1675 IPLLNNLSHLVQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSG 1734
Query: 982 GVLLLKFVDIDHQWADIFTKPLAEDRFNFI 1011
L + +++ AD+ TKPL F +
Sbjct: 1735 NNLYVYYIETKKNIADVMTKPLPIKTFKLL 1764
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 110 bits (274), Expect = 3e-23
Identities = 126/522 (24%), Positives = 226/522 (43%), Gaps = 51/522 (9%)
Query: 523 QDKDWILAMEEELNQFSKNDVWSLV-----KKPQSVHVIGTKWVFRNKLNEKGDVVRNKA 577
+ + +I A +E+NQ K W K+ VI + ++F N+K D +KA
Sbjct: 1246 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKA 1300
Query: 578 RLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEV 637
R VA+G Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 1301 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 1360
Query: 638 YVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTTLF 694
Y+ PP D + +LKKSLYGLKQ+ WYE + S+L++ E VRG +
Sbjct: 1361 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEVRG------W 1411
Query: 695 CKTYKDDILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPE 754
+K+ + + ++VDD++ S N K E ++ +++ ++ + IQ D
Sbjct: 1412 SCVFKNSQVTICLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGESDEEIQYDILGL 1471
Query: 755 GTYIHQSKYTKELLKKFNMTELVIAKTPMHP------------------TCILEKEDASG 796
+ KY K ++ ++ P++P LE++D
Sbjct: 1472 EIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKM 1531
Query: 797 KVCQKLYRGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNL 855
KV + + +IG Y+ R D+L+ ++ A+ P + L +++++ + +
Sbjct: 1532 KVHE--MQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDK 1589
Query: 856 GLMYKKTSEY----KLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALST 911
L++ K+ KL DA Y G++ KS GN L ++ S + S ST
Sbjct: 1590 QLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTST 1648
Query: 912 AEAEY--IPAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIE 969
EAE I ++ L Q D + + + +T +I +S N R +
Sbjct: 1649 TEAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDSKSTISIIISNNE-EKFRNRFFG 1707
Query: 970 VKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAEDRFNFI 1011
K +RD V L + +++ AD+ TKPL F +
Sbjct: 1708 TKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1749
Score = 94.7 bits (234), Expect = 1e-18
Identities = 123/538 (22%), Positives = 211/538 (38%), Gaps = 70/538 (13%)
Query: 5 LDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 61
LDSG SR + P+ V I G + D++ VL
Sbjct: 460 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 519
Query: 62 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNV 121
+ ++LLS+++LA F + + + DG+VL + + Y + L N+
Sbjct: 520 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 576
Query: 122 KC--LLSVNEEQ*VW-------HRRLGHVSMRKISQLSKLNLVRGL--PTLKFSS--DAL 168
+ +V+ + HR L H + + I K N + + +SS D
Sbjct: 577 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 636
Query: 169 CEACQKDKFTKV-HFKAKNVV--STSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 225
C C K TK H K + ++ P + LH D+FGPV Y + D+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696
Query: 226 WTWVKFLS--RKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIA 283
+ WV L R+D VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756
Query: 284 HDFSSPRTPQ*NGVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRIS----- 338
+++ + +GV ER NRTL + RT LQ +G+ + W A+ ++N ++
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 816
Query: 339 -------------VRPILNKTRYELWKNIKPNISYFHPFGCVCYVLNTK----------D 375
+ +L + + + PN S HP G Y L+
Sbjct: 817 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 875
Query: 376 RLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 435
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 876 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 932
Query: 436 SINVSDKGKAPEEAEPEEE--------EPEEEAGPS----DSQSQKKSRITAAHPKEL 481
+I ++ E PE+ P + PS DS+ K+ I A P+E+
Sbjct: 933 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV 988
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 109 bits (273), Expect = 3e-23
Identities = 121/495 (24%), Positives = 212/495 (42%), Gaps = 61/495 (12%)
Query: 555 VIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVN 614
++ T +F K N KAR+V +G +Q Y+ +K+ + + N
Sbjct: 1322 IVPTNTIFTKKRNGI-----YKARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLMIANN 1375
Query: 615 HNIILHQMDVKSAFLNGYISEEVYVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYER 674
N+ + +D+ AFL + EE+Y+ P + V KL K+LYGLKQ+P+ W +
Sbjct: 1376 RNMFMKTLDINHAFLYAKLEEEIYIPHPHDRRC------VVKLNKALYGLKQSPKEWNDH 1429
Query: 675 LSSF-----LLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQFLCKEFSEMM 729
L + L +N + G T +D L++ +YVDD + ++N+ EF +
Sbjct: 1430 LRQYLNGIGLKDNSYTPGLYQT-------EDKNLMIAVYVDDCVIAASNEQRLDEFINKL 1482
Query: 730 QAEFEMSMMGEL------KYFMGIQ---------VDQTPEGTYIHQSKYTKELLKKFNMT 774
++ FE+ + G L +G+ +D T + K E LKK +
Sbjct: 1483 KSNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKS 1542
Query: 775 ELVIAKT----PMHPTCILEKEDASGKVCQKLYRGMIGSLLYLT-ASRPDILFSVHLCAR 829
+ T P + +E+ V + + ++G L Y+ R DI F+V AR
Sbjct: 1543 SIPHMSTYKIDPKKDVLQMSEEEFRQGVLK--LQQLLGELNYVRHKCRYDIEFAVKKVAR 1600
Query: 830 FQSDPRETHLTAVKRILRYLKGSTNLGLMYKK--TSEYKLSGYCDADYVGDRTERKSTSG 887
+ P E + +I++YL ++G+ Y + + K+ DA VG + +S G
Sbjct: 1601 LVNYPHERVFYMIYKIIQYLVRYKDIGIHYDRDCNKDKKVIAITDAS-VGSEYDAQSRIG 1659
Query: 888 NC*FLGSNLVSWASKRQSTIALSTAEAE----YIPAAICSTQMLWMKHQLEDYQILESNI 943
+ G N+ + S + + +S+ EAE Y A T + +K E ++I
Sbjct: 1660 VILWYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGYADSETLKVTLKELGEGD---NNDI 1716
Query: 944 PIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYV-QKGVLLLKFVDIDHQWADIFTKP 1002
+ D+ AI + K +K I++ + +K + LLK AD+ TKP
Sbjct: 1717 VMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKLLKITG-KGNIADLLTKP 1775
Query: 1003 LAED---RFNFILKN 1014
++ RF +LKN
Sbjct: 1776 VSASDFKRFIQVLKN 1790
Score = 89.0 bits (219), Expect = 6e-17
Identities = 73/279 (26%), Positives = 126/279 (44%), Gaps = 17/279 (6%)
Query: 135 HRRLGHVSMRKISQLSKLN-LVRGLPTLKFSSDALCEACQKDKFTKVHF---KAKNVVST 190
H+R+GH +++I K N L +K ++ C+ C+ K TK + N +
Sbjct: 562 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 621
Query: 191 SRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRW--TWVKFLSRKDESHAVFSTFIAQ 248
P +D+FGPV + + KRY +++VD+ +R+ T F + A I
Sbjct: 622 HEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQY 681
Query: 249 VQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*NGVVERKNRTLQEM 308
V+ + ++ + SD G EF ND+ E F S GI H +S + NG ER RT+
Sbjct: 682 VETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITD 741
Query: 309 ARTMLQETGMAKYFWAEAVNTVCYIQNRISVR-----PILNKTRYELWKNIKPNISYFHP 363
A T+L+++ + FW AV + I+N + + P+ +R + + + F P
Sbjct: 742 ATTLLRQSNLRVKFWEYAVTSATNIRNYLEHKSTGKLPLKAISR----QPVTVRLMSFLP 797
Query: 364 FGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFY 402
FG + N + K ++L S G++F+
Sbjct: 798 FGEKGIIWNHNHK--KLKPSGLPSIILCKDPNSYGYKFF 834
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 108 bits (270), Expect = 7e-23
Identities = 122/526 (23%), Positives = 227/526 (42%), Gaps = 59/526 (11%)
Query: 523 QDKDWILAMEEELNQFSKNDVWSLV-----KKPQSVHVIGTKWVFRNKLNEKGDVVRNKA 577
+ + +I A +E+NQ K W K+ VI + ++F K + +KA
Sbjct: 819 EKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRKRDGT-----HKA 873
Query: 578 RLVAQGYSQQEGIDYTETFAPVARLE-----AVKLLISFSVNHNIILHQMDVKSAFLNGY 632
R VA+G I + +T+ P + A+ +S ++++N + Q+D+ SA+L
Sbjct: 874 RFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYAD 928
Query: 633 ISEEVYVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKV 689
I EE+Y+ PP D + +LKKSLYGLKQ+ WYE + S+L++ E VRG
Sbjct: 929 IKEELYIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG-- 983
Query: 690 DTTLFCKTYKDDILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQV 749
+ +K+ + + ++VDD+I S + K+ ++ +++ ++ + IQ
Sbjct: 984 ----WSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQY 1039
Query: 750 DQTPEGTYIHQSKYTKELLKKFNMTELVIAKTPMHP------------------TCILEK 791
D + KY K ++ ++ P++P LE+
Sbjct: 1040 DILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEE 1099
Query: 792 EDASGKVCQKLYRGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLK 850
+D KV + + +IG Y+ R D+L+ ++ A+ P + L +++++
Sbjct: 1100 DDYKMKVHE--MQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIW 1157
Query: 851 GSTNLGLMYKKTSEY----KLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQST 906
+ + L++ K+ KL DA Y G++ KS GN L ++ S + S
Sbjct: 1158 NTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASL 1216
Query: 907 IALSTAEAEYIPAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAIS-LSKNPILHSRA 965
ST EAE + + + H +++ + D+ + IS + N R
Sbjct: 1217 TCTSTTEAEIHAISESVPLLNNLSHLVQELNKKPITKGLLTDSKSTISIIISNNEEKFRN 1276
Query: 966 KHIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAEDRFNFI 1011
+ K +RD V L + +++ AD+ TKPL F +
Sbjct: 1277 RFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 94.7 bits (234), Expect = 1e-18
Identities = 123/538 (22%), Positives = 211/538 (38%), Gaps = 70/538 (13%)
Query: 5 LDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 61
LDSG SR + P+ V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 62 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNV 121
+ ++LLS+++LA F + + + DG+VL + + Y + L N+
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 122 KC--LLSVNEEQ*VW-------HRRLGHVSMRKISQLSKLNLVRGL--PTLKFSS--DAL 168
+ +V+ + HR L H + + I K N + + +SS D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 169 CEACQKDKFTKV-HFKAKNVV--STSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 225
C C K TK H K + ++ P + LH D+FGPV Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 226 WTWVKFLS--RKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIA 283
+ WV L R+D VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 284 HDFSSPRTPQ*NGVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRIS----- 338
+++ + +GV ER NRTL + RT LQ +G+ + W A+ ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 339 -------------VRPILNKTRYELWKNIKPNISYFHPFGCVCYVLNTK----------D 375
+ +L + + + PN S HP G Y L+
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 448
Query: 376 RLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 435
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 449 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 505
Query: 436 SINVSDKGKAPEEAEPEEE--------EPEEEAGPS----DSQSQKKSRITAAHPKEL 481
+I ++ E PE+ P + PS DS+ K+ I A P+E+
Sbjct: 506 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV 561
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 107 bits (266), Expect = 2e-22
Identities = 124/525 (23%), Positives = 230/525 (43%), Gaps = 57/525 (10%)
Query: 523 QDKDWILAMEEELNQFSKNDVWSLV-----KKPQSVHVIGTKWVFRNKLNEKGDVVRNKA 577
+ + +I A +E+NQ K W K+ VI + ++F N+K D +KA
Sbjct: 819 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKA 873
Query: 578 RLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEV 637
R VA+G Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 874 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 638 YVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTTLF 694
Y+ PP D + +LKKSLYGLKQ+ WYE + S+L++ E VRG +
Sbjct: 934 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG------W 984
Query: 695 CKTYKDDILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPE 754
+K+ + + ++VDD+I S + K+ ++ +++ ++ + IQ D
Sbjct: 985 SCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGL 1044
Query: 755 GTYIHQSKYTKELLKKFNMTELVIAKTPMHP------------------TCILEKEDASG 796
+ KY K ++ ++ P++P +++++
Sbjct: 1045 EIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKE 1104
Query: 797 KVCQKLYRGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNL 855
KV + + +IG Y+ R D+L+ ++ A+ P L +++++ + +
Sbjct: 1105 KVHE--MQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDK 1162
Query: 856 GLMYKKTS----EYKLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALST 911
L++ K + KL DA Y G++ KS GN L ++ S + S ST
Sbjct: 1163 QLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTST 1221
Query: 912 AEAEYIPAAICSTQML----WMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS-RAK 966
EAE I A S +L ++ +L I++ + D+ + IS+ K+ R +
Sbjct: 1222 TEAE-IHAISESVPLLNNLSYLIQELNKKPIIKG---LLTDSRSTISIIKSTNEEKFRNR 1277
Query: 967 HIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAEDRFNFI 1011
K +RD V L + +++ AD+ TKPL F +
Sbjct: 1278 FFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 93.2 bits (230), Expect = 3e-18
Identities = 121/538 (22%), Positives = 207/538 (37%), Gaps = 70/538 (13%)
Query: 5 LDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 61
LDSG SR + P+ V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 62 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNV 121
+ ++LLS+++LA F + + + DG+VL + + Y + L N+
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 122 KC--LLSVNEEQ*VW-------HRRLGHVSMRKISQLSKLNLVRGLPTLKFSS----DAL 168
+ +V+ + HR L H + + I K N + D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDRSSAIDYQ 209
Query: 169 CEACQKDKFTKV-HFKAKNVV--STSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 225
C C K TK H K + ++ P + LH D+FGPV Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 226 WTWVKFLS--RKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIA 283
+ WV L R+D VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 284 HDFSSPRTPQ*NGVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRIS----- 338
+++ + +GV ER NRTL + RT LQ +G+ + W A+ ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 339 -------------VRPILNKTRYELWKNIKPNISYFHPFGCVCYVLNTK----------D 375
+ +L + + + PN S HP G Y L+
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 448
Query: 376 RLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 435
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 449 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 505
Query: 436 SINVSDKGKAPEEAEPEEE--------EPEEEAGPS----DSQSQKKSRITAAHPKEL 481
+I ++ E PE+ P + PS DS+ K+ I A P+E+
Sbjct: 506 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV 561
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 106 bits (265), Expect = 3e-22
Identities = 122/522 (23%), Positives = 224/522 (42%), Gaps = 51/522 (9%)
Query: 523 QDKDWILAMEEELNQFSKNDVWSLVK-----KPQSVHVIGTKWVFRNKLNEKGDVVRNKA 577
+ + +I A +E+NQ K W K + VI + ++F K + +KA
Sbjct: 819 EKEKYIEAYHKEVNQLLKMKTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGT-----HKA 873
Query: 578 RLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEV 637
R VA+G Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 874 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 638 YVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTTLF 694
Y+ PP D + +LKKSLYGLKQ+ WYE + S+L++ E VRG +
Sbjct: 934 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG------W 984
Query: 695 CKTYKDDILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPE 754
+++ + + ++VDD++ S N K + ++ +++ ++ + IQ D
Sbjct: 985 SCVFENSQVTICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGESDEEIQYDILGL 1044
Query: 755 GTYIHQSKYTKELLKKFNMTELVIAKTPMHP------------------TCILEKEDASG 796
+ KY K ++ ++ P++P LE++D
Sbjct: 1045 EIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKM 1104
Query: 797 KVCQKLYRGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNL 855
KV + + +IG Y+ R D+L+ ++ A+ P + L +++++ + +
Sbjct: 1105 KVHE--MQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDK 1162
Query: 856 GLMYKKTSEY----KLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALST 911
L++ K+ KL DA Y G++ KS GN L ++ S + S ST
Sbjct: 1163 QLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTST 1221
Query: 912 AEAEY--IPAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIE 969
EAE I ++ L Q D + + + +T +I +S N R +
Sbjct: 1222 TEAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDSKSTISIIISNNE-EKFRNRFFG 1280
Query: 970 VKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAEDRFNFI 1011
K +RD V L + +++ AD+ TKPL F +
Sbjct: 1281 TKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 94.0 bits (232), Expect = 2e-18
Identities = 123/538 (22%), Positives = 211/538 (38%), Gaps = 70/538 (13%)
Query: 5 LDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 61
LDSG SR + P+ V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 62 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNV 121
+ ++LLS+++LA F + + + DG+VL + + Y + L N+
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 122 KC--LLSVNEEQ*VW-------HRRLGHVSMRKISQLSKLNLVRGL--PTLKFSS--DAL 168
+ +V+ + HR L H + + I K N + + +SS D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 169 CEACQKDKFTKV-HFKAKNVV--STSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 225
C C K TK H K + ++ P + LH D+FGPV Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 226 WTWVKFLS--RKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIA 283
+ WV L R+D VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 284 HDFSSPRTPQ*NGVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRIS----- 338
+++ + +GV ER NRTL + RT LQ +G+ + W A+ ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 339 -------------VRPILNKTRYELWKNIKPNISYFHPFGCVCYVLNTK----------D 375
+ +L + + + PN S HP G Y L+
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 448
Query: 376 RLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 435
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 449 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYHSFIASNEIQQSNDL 505
Query: 436 SINVSDKGKAPEEAEPEE--------EEPEEEAGPS----DSQSQKKSRITAAHPKEL 481
+I ++ E PE+ P + PS DS+ K+ I A P+E+
Sbjct: 506 NIESDHDFQSDIELHPEQLRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV 561
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 105 bits (263), Expect = 5e-22
Identities = 117/521 (22%), Positives = 223/521 (42%), Gaps = 49/521 (9%)
Query: 523 QDKDWILAMEEELNQFSKNDVWSLVK-----KPQSVHVIGTKWVFRNKLNEKGDVVRNKA 577
+ + +I A +E+NQ K + W K + VI + ++F K + +KA
Sbjct: 819 EKEKYIEAYHKEVNQLLKMNTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGT-----HKA 873
Query: 578 RLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEV 637
R VA+G Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 874 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 638 YVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTTLF 694
Y+ PP D + +LKKSLYGLKQ+ WYE + S+L++ E VRG +
Sbjct: 934 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG------W 984
Query: 695 CKTYKDDILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPE 754
+K+ + + ++VDD+I S + K+ ++ +++ ++ + IQ D
Sbjct: 985 SCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGL 1044
Query: 755 GTYIHQSKYTKELLKKFNMTELVIAKTPMHP------------------TCILEKEDASG 796
+ KY K ++ ++ P++P +++++
Sbjct: 1045 EIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKE 1104
Query: 797 KVCQKLYRGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNL 855
KV + + +IG Y+ R D+L+ ++ A+ P L +++++ + +
Sbjct: 1105 KVHE--MQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDK 1162
Query: 856 GLMYKKTS----EYKLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALST 911
L++ K + KL DA Y G++ KS GN L ++ S + S ST
Sbjct: 1163 QLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTST 1221
Query: 912 AEAEYIPAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAIS-LSKNPILHSRAKHIEV 970
EAE + + + H +++ + D+ + IS + N R +
Sbjct: 1222 TEAEIHAISESVPLLNNLSHLVQELNKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGT 1281
Query: 971 KYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAEDRFNFI 1011
K +RD V L + +++ AD+ TKPL F +
Sbjct: 1282 KAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1322
Score = 94.7 bits (234), Expect = 1e-18
Identities = 123/538 (22%), Positives = 211/538 (38%), Gaps = 70/538 (13%)
Query: 5 LDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 61
LDSG SR + P+ V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 62 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNV 121
+ ++LLS+++LA F + + + DG+VL + + Y + L N+
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 122 KC--LLSVNEEQ*VW-------HRRLGHVSMRKISQLSKLNLVRGL--PTLKFSS--DAL 168
+ +V+ + HR L H + + I K N + + +SS D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 169 CEACQKDKFTKV-HFKAKNVV--STSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 225
C C K TK H K + ++ P + LH D+FGPV Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 226 WTWVKFLS--RKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIA 283
+ WV L R+D VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 284 HDFSSPRTPQ*NGVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRIS----- 338
+++ + +GV ER NRTL + RT LQ +G+ + W A+ ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 339 -------------VRPILNKTRYELWKNIKPNISYFHPFGCVCYVLNTK----------D 375
+ +L + + + PN S HP G Y L+
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 448
Query: 376 RLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 435
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 449 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 505
Query: 436 SINVSDKGKAPEEAEPEEE--------EPEEEAGPS----DSQSQKKSRITAAHPKEL 481
+I ++ E PE+ P + PS DS+ K+ I A P+E+
Sbjct: 506 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV 561
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 105 bits (263), Expect = 5e-22
Identities = 124/525 (23%), Positives = 229/525 (43%), Gaps = 57/525 (10%)
Query: 523 QDKDWILAMEEELNQFSKNDVWSLV-----KKPQSVHVIGTKWVFRNKLNEKGDVVRNKA 577
+ + +I A +E+NQ K W K+ VI + ++F N+K D +KA
Sbjct: 1246 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKA 1300
Query: 578 RLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEV 637
R VA+G Q T + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 1301 RFVARGDIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 1360
Query: 638 YVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTTLF 694
Y+ PP D + +LKKS YGLKQ+ WYE + S+L++ E VRG +
Sbjct: 1361 YIRPPPHLGMN---DKLIRLKKSHYGLKQSGANWYETIKSYLIKQCGMEEVRG------W 1411
Query: 695 CKTYKDDILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPE 754
+K+ + + ++VDD+I S + K+ ++ +++ ++ + IQ D
Sbjct: 1412 SCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGL 1471
Query: 755 GTYIHQSKYTKELLKKFNMTELVIAKTPMHP------------------TCILEKEDASG 796
+ KY K ++ ++ P++P +++++
Sbjct: 1472 EIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKE 1531
Query: 797 KVCQKLYRGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNL 855
KV + + +IG Y+ R D+L+ ++ A+ P L +++++ + +
Sbjct: 1532 KVHE--MQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDK 1589
Query: 856 GLMYKKTS----EYKLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALST 911
L++ K + KL DA Y G++ KS GN L ++ S + S ST
Sbjct: 1590 QLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTST 1648
Query: 912 AEAEYIPAAICSTQML----WMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS-RAK 966
EAE I A S +L ++ +L I++ + D+ + IS+ K+ R +
Sbjct: 1649 TEAE-IHAISESVPLLNNLSYLIQELNKKPIIKG---LLTDSRSTISIIKSTNEEKFRNR 1704
Query: 967 HIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAEDRFNFI 1011
K +RD V L + +++ AD+ TKPL F +
Sbjct: 1705 FFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLL 1749
Score = 94.0 bits (232), Expect = 2e-18
Identities = 123/538 (22%), Positives = 211/538 (38%), Gaps = 70/538 (13%)
Query: 5 LDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICV---DSSPCIDNVLLV 61
LDSG SR + P+ V I G + D++ VL
Sbjct: 460 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 519
Query: 62 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNV 121
+ ++LLS+++LA F + + + DG+VL + + Y + L N+
Sbjct: 520 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVQYGDFYWVSKRYLLPSNI 576
Query: 122 KC--LLSVNEEQ*VW-------HRRLGHVSMRKISQLSKLNLVRGL--PTLKFSS--DAL 168
+ +V+ + HR L H + + I K N + + +SS D
Sbjct: 577 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 636
Query: 169 CEACQKDKFTKV-HFKAKNVV--STSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSR 225
C C K TK H K + ++ P + LH D+FGPV Y + D+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696
Query: 226 WTWVKFLS--RKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIA 283
+ WV L R+D VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756
Query: 284 HDFSSPRTPQ*NGVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRIS----- 338
+++ + +GV ER NRTL + RT LQ +G+ + W A+ ++N ++
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 816
Query: 339 -------------VRPILNKTRYELWKNIKPNISYFHPFGCVCYVLNTK----------D 375
+ +L + + + PN S HP G Y L+
Sbjct: 817 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 875
Query: 376 RLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 435
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 876 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQESNDL 932
Query: 436 SINVSDKGKAPEEAEPEEE--------EPEEEAGPS----DSQSQKKSRITAAHPKEL 481
+I ++ E PE+ P + PS DS+ K+ I A P+E+
Sbjct: 933 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRA--PREV 988
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 97.4 bits (241), Expect = 2e-19
Identities = 44/97 (45%), Positives = 67/97 (68%)
Query: 514 EPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVV 573
EPKS+ AL+D W AM+EEL+ S+N W LV P + +++G KWVF+ KL+ G +
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
Query: 574 RNKARLVAQGYSQQEGIDYTETFAPVARLEAVKLLIS 610
R KARLVA+G+ Q+EGI + ET++PV R ++ +++
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 65.9 bits (159), Expect = 5e-10
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 811 LYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTSEYKLSGY 870
+YLT +RPD+ F+V+ ++F S R + AV ++L Y+KG+ GL Y TS+ +L +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 871 CDADYVGDRTERKSTSGNC 889
D+D+ R+S +G C
Sbjct: 61 ADSDWASCPDTRRSVTGFC 79
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 53.1 bits (126), Expect = 4e-06
Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 19/237 (8%)
Query: 84 NQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNVKCLLSVNEEQ*VWHRRLGHVSM 143
+Q+ RA+ + N +++ KI L + EA L++ ++ W H+
Sbjct: 806 DQEEARAIGATENKDTRNWEKEG---KIVLPQKEA------LAMIQQMHAWT----HLGN 852
Query: 144 RKISQLSKLN--LVRGLPTLKFSSDALCEACQKDKFTKVHFKAKNVVSTSRPLELLHIDL 201
RK+ L + L+ TL + C+ CQ+ A +RP ID
Sbjct: 853 RKLKLLIEKTDFLIPRASTLIEQVTSACKVCQQVNAGATRVPAGKRTRGNRPGVYWEID- 911
Query: 202 FGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHAVFSTFIAQVQNEKACRIVRVR 261
F VK G K Y +V VD +S W F +R++ +H V + ++ V +
Sbjct: 912 FTEVKPHYAGYK-YLLVFVDTFSGWVEA-FPTRQETAHIVAKKILEEIFPRFGLPKV-IG 968
Query: 262 SDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*NGVVERKNRTLQEMARTMLQETGM 318
SD+G F + + L GI PQ +G VER NRT++E + ETG+
Sbjct: 969 SDNGPAFVSQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGL 1025
>M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710
(ORF120)
Length = 120
Score = 52.8 bits (125), Expect = 5e-06
Identities = 28/69 (40%), Positives = 36/69 (51%)
Query: 302 NRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIKPNISYF 361
NRT+ E R+ML E G+ K F A+A NT +I N+ I E+W P SY
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 362 HPFGCVCYV 370
FGCV Y+
Sbjct: 62 RRFGCVAYI 70
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 49.7 bits (117), Expect = 4e-05
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 6/181 (3%)
Query: 140 HVSMRKISQLSKLN--LVRGLPTLKFSSDALCEACQKDKFTKVHFKAKNVVSTSRPLELL 197
H+S +K+ L + L+ TL + C+ CQ+ +RP
Sbjct: 706 HLSNQKLKLLIEKTDFLIPKAGTLIEQVTSACKVCQQVNAGATRVPEGKRTRGNRPGVYW 765
Query: 198 HIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHAVFSTFIAQVQNEKACRI 257
ID F VK G K Y +V VD +S W + +R++ +H V + ++
Sbjct: 766 EID-FTEVKPHYAGYK-YLLVFVDTFSGWVEA-YPTRQETAHMVAKKILEEIFPRFGLPK 822
Query: 258 VRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*NGVVERKNRTLQEMARTMLQETG 317
V + SD+G F + + L + GI PQ +G VER NRT++E + ETG
Sbjct: 823 V-IGSDNGPAFVSQVSQGLARTLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETG 881
Query: 318 M 318
+
Sbjct: 882 L 882
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 48.9 bits (115), Expect = 7e-05
Identities = 48/194 (24%), Positives = 75/194 (37%), Gaps = 16/194 (8%)
Query: 172 CQKDKFTKVHFKAKNVV----STSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWT 227
CQ+ T KA + +P + ID GP+ G Y +V+VD + +T
Sbjct: 650 CQQCLITNASNKASGPILRPDRPQKPFDKFFIDYIGPLPPSQ--GYLYVLVVVDGMTGFT 707
Query: 228 WVKFLSRKDESHAVFS-TFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDF 286
W+ S V S + + K + SD G F + F GI +F
Sbjct: 708 WLYPTKAPSTSATVKSLNVLTSIAIPKV-----IHSDQGAAFTSSTFAEWAKERGIHLEF 762
Query: 287 SSPRTPQ*NGVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKT 346
S+P PQ VERKN ++ + +L W + + V N + P+L T
Sbjct: 763 STPYHPQSGSKVERKNSDIKRLLTKLLVGRPTK---WYDLLPVVQLALNN-TYSPVLKYT 818
Query: 347 RYELWKNIKPNISY 360
++L I N +
Sbjct: 819 PHQLLFGIDSNTPF 832
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 48.5 bits (114), Expect = 9e-05
Identities = 49/176 (27%), Positives = 80/176 (44%), Gaps = 10/176 (5%)
Query: 137 RLGHVSMRKISQL-----SKLNLVRGLPTLKFSSDALCEACQKDKFTKVHFKAKNVVSTS 191
RL H+ +K+ L S ++ TL++ +D+ C C + +K A V
Sbjct: 849 RLTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADS-CTVCAQVNASKAKIGAGVRVRGH 907
Query: 192 RPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHAVFSTFIAQVQN 251
RP ID F VK + G +Y +V VD +S W F ++++ + V + ++
Sbjct: 908 RPGSHWEID-FTEVKP-GLYGYKYLLVFVDTFSGWVEA-FPTKRETARVVSKKLLEEIFP 964
Query: 252 EKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*NGVVERKNRTLQE 307
V + SD+G F + +S+ D GI PQ +G VER NRT++E
Sbjct: 965 RFGMPQV-LGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKE 1019
>POL_FIVSD (P19028) Pol polyprotein [Contains: Protease (Retropepsin)
(EC 3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Deoxyuridine
5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)
(dUTPase); Integrase (IN)]
Length = 1124
Score = 48.5 bits (114), Expect = 9e-05
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 217 MVIVDDYSRWTWVKFLSRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESL 276
+V + S + W + +S++ T A +Q A + +++D+G F+N K E +
Sbjct: 919 LVAIHVESGYIWAQIISQETAD----CTVKAVLQLLSAHIVTELQTDNGPNFKNQKMEGV 974
Query: 277 FDSYGIAHDFSSPRTPQ*NGVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQ 334
+ G+ H F P PQ +VE N+TL+ L ET A AV+ + + Q
Sbjct: 975 LNYMGVKHKFGIPGNPQSQALVENVNQTLKVWVHKFLPETTSLDNALALAVHCLNFKQ 1032
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,016,026
Number of Sequences: 164201
Number of extensions: 5105864
Number of successful extensions: 17274
Number of sequences better than 10.0: 147
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 16673
Number of HSP's gapped (non-prelim): 339
length of query: 1019
length of database: 59,974,054
effective HSP length: 120
effective length of query: 899
effective length of database: 40,269,934
effective search space: 36202670666
effective search space used: 36202670666
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)
Lotus: description of TM0086.17