BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0083.5
(176 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GCC2_HUMAN (Q8IWJ2) GRIP and coiled-coil domain-containing prote... 39 0.008
MYS3_SCHPO (O14157) Myosin type II heavy chain 2 36 0.040
LIN5_CAEEL (P45970) Spindle apparatus protein lin-5 34 0.15
SMC4_SCHPO (P41004) Structural maintenance of chromosome 4 (Chro... 33 0.44
TPMM_TRICO (P15846) Tropomyosin, muscle 32 0.58
TU12_SCHPO (Q9UUG8) Transcriptional repressor tup12 32 0.98
DTNB_HUMAN (O60941) Dystrobrevin beta (Beta-dystrobrevin) (DTN-B) 32 0.98
TPM_ANISI (Q9NAS5) Tropomyosin (Allergen Ani s 3) 31 1.3
MYSA_DROME (P05661) Myosin heavy chain, muscle 31 1.3
MY5A_HUMAN (Q9Y4I1) Myosin Va (Myosin 5A) (Dilute myosin heavy c... 31 1.3
KMHA_DICDI (P42527) Myosin heavy chain kinase A (EC 2.7.1.129) (... 31 1.3
KM11_TRYCR (Q9U6Z1) Kinetoplastid membrane protein-11 (KMP-11) 31 1.3
TPM_ONCVO (Q25632) Tropomyosin (MOv-14) (Ov-tmy-1) 31 1.7
GPRS_DROME (O61366) Serine-enriched protein 31 1.7
FOR3_SCHPO (O94532) Formin 3 31 1.7
RA50_SULSO (Q97WH0) DNA double-strand break repair rad50 ATPase 30 2.2
CU13_HUMAN (O95447) Protein C21orf13 30 2.2
AKA9_HUMAN (Q99996) A-kinase anchor protein 9 (Protein kinase A ... 30 2.2
KM11_LEITR (O21436) Kinetoplastid membrane protein-11 (KMP-11) 30 2.9
K11B_LEIIN (Q25297) Kinetoplastid membrane protein-11B 30 2.9
>GCC2_HUMAN (Q8IWJ2) GRIP and coiled-coil domain-containing protein 2
(Golgi coiled coil protein GCC185) (CTCL tumor antigen
se1-1) (CLL-associated antigen KW-11)
Length = 1583
Score = 38.5 bits (88), Expect = 0.008
Identities = 19/62 (30%), Positives = 38/62 (60%), Gaps = 1/62 (1%)
Query: 104 REARQTMDEKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEEHSDKLSVKIHHIVNNL 163
+E Q + K+ KI++L EI+I+K+ T QE+++S V+++ +K + KI ++
Sbjct: 1069 KELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEK-NTKIKQLLVKT 1127
Query: 164 KE 165
K+
Sbjct: 1128 KK 1129
>MYS3_SCHPO (O14157) Myosin type II heavy chain 2
Length = 2104
Score = 36.2 bits (82), Expect = 0.040
Identities = 24/84 (28%), Positives = 37/84 (43%)
Query: 92 VKDHNHPLVVSPREARQTMDEKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEEHSDK 151
+++ N L+ E D K+QEL E K C TY+ QL+S + E +
Sbjct: 1002 IRELNEKLMRLDDELLLKQRSYDTKVQELREENASLKDQCRTYESQLASLVSKYSETESE 1061
Query: 152 LSVKIHHIVNNLKEFEPIEELLHQ 175
L+ K +V KE + LH+
Sbjct: 1062 LNKKEAELVIFQKEITEYRDQLHK 1085
>LIN5_CAEEL (P45970) Spindle apparatus protein lin-5
Length = 821
Score = 34.3 bits (77), Expect = 0.15
Identities = 30/132 (22%), Positives = 52/132 (38%), Gaps = 7/132 (5%)
Query: 35 DGRILARRLGCNKEGHCLNIRGKLGSIRRPRASTREGCKAMIHIKYDKSGKWVITKFVKD 94
+ + A L C+ E + L + R + R +++ K K V +
Sbjct: 270 EAQFRAEELSCDLEAKKDEVHNILQQLNESRMTLRSEQRSLEEADIKKENLTAKLKTVTE 329
Query: 95 HNHPLVVSPREARQTMDEKDKKI----QELTAEIRIKKRLCATYQEQLSSFMKI---VEE 147
N L+ RE R D + + QELT +R + A QEQL+ KI ++
Sbjct: 330 DNGKLMKQARELRDLNDYEFARFRQQEQELTETLRATQDQMADLQEQLTGVEKIRASLKS 389
Query: 148 HSDKLSVKIHHI 159
++ LS + +
Sbjct: 390 ENESLSASVEEL 401
>SMC4_SCHPO (P41004) Structural maintenance of chromosome 4
(Chromosome segregation protein cut3)
Length = 1324
Score = 32.7 bits (73), Expect = 0.44
Identities = 18/63 (28%), Positives = 29/63 (45%)
Query: 90 KFVKDHNHPLVVSPREARQTMDEKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEEHS 149
KFVKD + + ++ Q ++ LT+E AT + +L S K V+EH
Sbjct: 949 KFVKDKLNKMSFKKKKNEQRSQSFQVELSNLTSEYDTTTESIATLKTELQSLNKYVDEHK 1008
Query: 150 DKL 152
+L
Sbjct: 1009 SRL 1011
>TPMM_TRICO (P15846) Tropomyosin, muscle
Length = 284
Score = 32.3 bits (72), Expect = 0.58
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 106 ARQTMDEKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEEHSDKLSVKIHHIVNNLKE 165
A ++EK+KK+QE AE+ R +E+L EE + K+ +N+ E
Sbjct: 67 ATSQLEEKEKKVQEAEAEVAALNRRMTLLEEELER----AEERLKIATEKLEEATHNVDE 122
Query: 166 FEPIEELL 173
E + +++
Sbjct: 123 SERVRKVM 130
>TU12_SCHPO (Q9UUG8) Transcriptional repressor tup12
Length = 586
Score = 31.6 bits (70), Expect = 0.98
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 31 RSERDGRILARRLGCNKEGHCLNIR-GKLGSIRRPRASTREGCKAMIHIKYDKSGKWVIT 89
R DG+ LA GCN+ N+ GKL ++ + +S REG + + + GK++ T
Sbjct: 294 RFSADGKFLAT--GCNRAAMVFNVETGKLITLLQEESSKREGDLYVRSVAFSPDGKYLAT 351
>DTNB_HUMAN (O60941) Dystrobrevin beta (Beta-dystrobrevin) (DTN-B)
Length = 627
Score = 31.6 bits (70), Expect = 0.98
Identities = 36/176 (20%), Positives = 72/176 (40%), Gaps = 31/176 (17%)
Query: 5 SEDAAKVFYDEYARHVGFVMRVMSC-------RRSERDGRILARRLGCNKEGHCLNIRGK 57
S+D DE+A +V R+ C R + + R++AR + + +
Sbjct: 364 SQDIPSHLADEHALIASYVARLQHCARVLDSPSRLDEEHRLIAR--------YAARLAAE 415
Query: 58 LGSIRRPRASTREGCKAMIHIKYDKSGKWVITKFVKDHNHPLVVSPR------EARQTMD 111
G++ RP + +K + +I + + L R +A Q
Sbjct: 416 AGNVTRPPTD------LSFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTP 469
Query: 112 EKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEEHSDKLSVKIHHIVNNLKEFE 167
EK ++ L AE+R+ ++ +++L M ++E +L V++ ++ LKE E
Sbjct: 470 EKAQQNPTLLAELRLLRQ----RKDELEQRMSALQESRRELMVQLEELMKLLKEEE 521
>TPM_ANISI (Q9NAS5) Tropomyosin (Allergen Ani s 3)
Length = 284
Score = 31.2 bits (69), Expect = 1.3
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 106 ARQTMDEKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEEHSDKLSVKIHHIVNNLKE 165
A ++EK+KK+QE AE+ R +E+L EE + K+ + E
Sbjct: 67 ANSNLEEKEKKVQEAEAEVAALNRRMTLLEEELER----AEERLKLATAKLEEATHTADE 122
Query: 166 FEPIEELL 173
E + +++
Sbjct: 123 SERVRKVM 130
>MYSA_DROME (P05661) Myosin heavy chain, muscle
Length = 1962
Score = 31.2 bits (69), Expect = 1.3
Identities = 12/52 (23%), Positives = 29/52 (55%)
Query: 104 REARQTMDEKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEEHSDKLSVK 155
+E QT+ KDK++ +TA++ ++ + +Q Q+ +EE +++ +
Sbjct: 1073 KELEQTIQRKDKELSSITAKLEDEQVVVLKHQRQIKELQARIEELEEEVEAE 1124
>MY5A_HUMAN (Q9Y4I1) Myosin Va (Myosin 5A) (Dilute myosin heavy chain,
non-muscle) (Myosin heavy chain 12) (Myoxin)
Length = 1855
Score = 31.2 bits (69), Expect = 1.3
Identities = 35/143 (24%), Positives = 66/143 (45%), Gaps = 12/143 (8%)
Query: 25 RVMSCRRSERDGRILARRLGCNKEGHCLNIRGKLGSIRRPRASTREGCKAMIHIKYDKSG 84
R M +R + +I AR + K+ H + + K+ ++R + K ++ + G
Sbjct: 897 RRMMAKRELKKLKIEARSVERYKKLH-IGMENKIMQLQRKVDEQNKDYKCLVEKLTNLEG 955
Query: 85 KWVI-TKFVKDHNHPLVVSPREARQTMDEKDKKIQELTAEI-RIKKRLCATYQEQLSSFM 142
+ T+ ++ L +S EA+ ++ L EI +++K L EQ S
Sbjct: 956 IYNSETEKLRSDLERLQLSEEEAKVATG----RVLSLQEEIAKLRKDL-----EQTRSEK 1006
Query: 143 KIVEEHSDKLSVKIHHIVNNLKE 165
K +EEH+D+ + +V+NLKE
Sbjct: 1007 KCIEEHADRYKQETEQLVSNLKE 1029
>KMHA_DICDI (P42527) Myosin heavy chain kinase A (EC 2.7.1.129)
(MHCK A)
Length = 1146
Score = 31.2 bits (69), Expect = 1.3
Identities = 18/86 (20%), Positives = 38/86 (43%), Gaps = 6/86 (6%)
Query: 88 ITKFVKDHNHPLVVSPREARQTMDEKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEE 147
+ + VKD+ + ++ + D++D KI+++ +++ L Q L + + V+
Sbjct: 396 VERSVKDNRSEIEGLEKDCKNQFDKQDNKIKQVEDDLKKSDSLLLLMQNNLKKYNEFVDR 455
Query: 148 HSD------KLSVKIHHIVNNLKEFE 167
D KL I + N K+ E
Sbjct: 456 ERDRESERLKLQDSIKRLEQNQKKIE 481
>KM11_TRYCR (Q9U6Z1) Kinetoplastid membrane protein-11 (KMP-11)
Length = 92
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/71 (29%), Positives = 35/71 (48%), Gaps = 5/71 (7%)
Query: 105 EARQTMDEKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEEHSDKLSVKIHHIVNNLK 164
E + M+E++KK A+ + L +E F K+++EH+DK + K+H + K
Sbjct: 18 EFAKKMEEQNKKF---FADKPDESTLSPEMKEHYEKFEKMIQEHTDKFNKKMHEHSEHFK 74
Query: 165 EFEPIEELLHQ 175
ELL Q
Sbjct: 75 --AKFAELLEQ 83
>TPM_ONCVO (Q25632) Tropomyosin (MOv-14) (Ov-tmy-1)
Length = 284
Score = 30.8 bits (68), Expect = 1.7
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 106 ARQTMDEKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEEHSDKLSVKIH 157
A +++K+KK+QE AE+ R +E+L + ++ +DKL H
Sbjct: 67 ANTNLEDKEKKVQEAEAEVAALNRRMTLLEEELERAEERLKIATDKLEEATH 118
>GPRS_DROME (O61366) Serine-enriched protein
Length = 1302
Score = 30.8 bits (68), Expect = 1.7
Identities = 19/96 (19%), Positives = 42/96 (42%), Gaps = 7/96 (7%)
Query: 75 MIHIKYDKSGKWVITKFVKDHNHPLVVSPREARQTMDEKDKKIQELTAEIRIKKRLCATY 134
+ ++ ++K G+ I H + +E +E +K E E+ A +
Sbjct: 757 LANVHFEKVGESYI-------KHERLRELQEPEVVKEEDTEKDAEAEVEVEQTDAAMAQF 809
Query: 135 QEQLSSFMKIVEEHSDKLSVKIHHIVNNLKEFEPIE 170
E++++ +K+V + + + +HH + EPIE
Sbjct: 810 VEEVTNSLKVVALNGEGGTAAVHHFTRRSESREPIE 845
>FOR3_SCHPO (O94532) Formin 3
Length = 1461
Score = 30.8 bits (68), Expect = 1.7
Identities = 17/64 (26%), Positives = 34/64 (52%), Gaps = 3/64 (4%)
Query: 99 LVVSPREARQTMDEKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEEHSDKLSVKIHH 158
L V PR+ Q + K++ EL AE+ ++ L A+ Q + + + + +KL ++ H
Sbjct: 573 LNVGPRDPMQFLK---KQLDELKAELNLRDNLLASMQREFETRYRAQIQAYNKLQSQMEH 629
Query: 159 IVNN 162
+ N+
Sbjct: 630 VQNS 633
>RA50_SULSO (Q97WH0) DNA double-strand break repair rad50 ATPase
Length = 864
Score = 30.4 bits (67), Expect = 2.2
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 105 EARQTMDEKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEEHSDKLSVKIHHIVNNLK 164
E+ + +DE+ KKI E E+++ Y E+ K +E DK VK+ + +
Sbjct: 509 ESLKNIDEEIKKINEEVKELKL-------YYEEFMRLSKYTKEELDKKRVKLDEMKKKKE 561
Query: 165 EFE 167
E E
Sbjct: 562 EIE 564
>CU13_HUMAN (O95447) Protein C21orf13
Length = 670
Score = 30.4 bits (67), Expect = 2.2
Identities = 18/59 (30%), Positives = 29/59 (48%), Gaps = 6/59 (10%)
Query: 110 MDEKDKKIQELTAEIRIKKRLCATYQEQLSSFMK---IVEEHSDKLSVKIHHIVNNLKE 165
MD DKKIQ L ++R+ C + QL+ + + + L V++ H+ LKE
Sbjct: 271 MDANDKKIQSLEKQLRLN---CRAFSRQLAIETRKTLAAQTATKTLQVEVKHLQQKLKE 326
>AKA9_HUMAN (Q99996) A-kinase anchor protein 9 (Protein kinase A
anchoring protein 9) (PRKA9) (A-kinase anchor protein 450
kDa) (AKAP 450) (A-kinase anchor protein 350 kDa) (AKAP
350) (hgAKAP 350) (AKAP 120 like protein) (Hyperion
protein) (Yotiao protein
Length = 3911
Score = 30.4 bits (67), Expect = 2.2
Identities = 12/50 (24%), Positives = 31/50 (62%)
Query: 107 RQTMDEKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEEHSDKLSVKI 156
R+ ++ K++++Q+L ++ I+K+ T ++L K+ ++ +KL + I
Sbjct: 2228 REELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAI 2277
>KM11_LEITR (O21436) Kinetoplastid membrane protein-11 (KMP-11)
Length = 92
Score = 30.0 bits (66), Expect = 2.9
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 111 DEKDKKIQELTAEIRIKK----RLCATYQEQLSSFMKIVEEHSDKLSVKIHHIVNNLKEF 166
+E ++K+QE A+ K L +E F ++++EH++K + K+H + K
Sbjct: 17 EEFNRKMQEQNAKFFADKPDESTLSPEMKEHYEKFERMIKEHTEKFNKKMHEHSEHFK-- 74
Query: 167 EPIEELLHQ 175
+ ELL Q
Sbjct: 75 QKFAELLEQ 83
>K11B_LEIIN (Q25297) Kinetoplastid membrane protein-11B
Length = 92
Score = 30.0 bits (66), Expect = 2.9
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 111 DEKDKKIQELTAEIRIKK----RLCATYQEQLSSFMKIVEEHSDKLSVKIHHIVNNLKEF 166
+E ++K+QE A+ K L +E F ++++EH++K + K+H + K
Sbjct: 17 EEFNRKMQEQNAKFFADKPDESTLSPEMKEHYEKFERMIKEHTEKFNKKMHEHSEHFK-- 74
Query: 167 EPIEELLHQ 175
+ ELL Q
Sbjct: 75 QKFAELLEQ 83
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.135 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,769,848
Number of Sequences: 164201
Number of extensions: 745725
Number of successful extensions: 2910
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 2859
Number of HSP's gapped (non-prelim): 100
length of query: 176
length of database: 59,974,054
effective HSP length: 103
effective length of query: 73
effective length of database: 43,061,351
effective search space: 3143478623
effective search space used: 3143478623
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0083.5