BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0083.13
         (195 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-assoc...    32  0.72
PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteaso...    31  1.6
PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteaso...    31  1.6
TRDN_RABIT (Q28820) Triadin                                            31  2.1
DGT1_RHIME (Q92Q32) Deoxyguanosinetriphosphate triphosphohydrola...    31  2.1
Y586_METJA (Q58006) Putative HTH-type transcriptional regulator ...    30  2.7
TERM_BPLP7 (P16937) DNA packaging protein gp3 (Terminase small s...    30  2.7
EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline...    30  2.7
CD2_RAT (P08921) T-cell surface antigen CD2 precursor (T-cell su...    30  2.7
Y4DM_RHISN (P55412) Hypothetical 45.3 kDa protein y4dM                 30  3.6
TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome p...    30  3.6
Y085_BUCBP (Q89AY5) Hypothetical UPF0011 protein bbp085                30  4.6
HMX_STRPU (Q26656) Homeobox protein (SpHmx) (H6-like) (Fragment)       30  4.6
GOA3_MOUSE (P55937) Golgi autoantigen, golgin subfamily A member...    30  4.6
CD2_MOUSE (P08920) T-cell surface antigen CD2 precursor (T-cell ...    30  4.6
YIEM_ECOLI (P03818) Hypothetical protein yieM                          29  7.9
Y2F9_ENCCU (Q8STG8) Hypothetical protein ECU02_1590/ECU04_0060/E...    29  7.9
H15_MOUSE (P43276) Histone H1.5 (H1 VAR.5) (H1b)                       29  7.9
FRI_ARATH (Q9FDW0) FRIGIDA protein                                     29  7.9

>BAT2_HUMAN (P48634) Large proline-rich protein BAT2
           (HLA-B-associated transcript 2) (G2)
          Length = 2142

 Score = 32.3 bits (72), Expect = 0.72
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 11  PIRPCHVRKEAVTAKRHTPP---------KARGRGLAKQRDPPGNDTYHPKSQASHPPQD 61
           P+ P    KE        PP         + +G G+   R PP     +PK Q S PP+ 
Sbjct: 576 PVEPQLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRF 635

Query: 62  KMTSPEAYLK 71
           +    E  LK
Sbjct: 636 QRQQQEQLLK 645


>PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteasome
           regulatory subunit)
          Length = 420

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 121 ELTEEMWELHRRRLEVNMLIWGLEVSATEHKGEETGTMGEIEAELTSLLATREGLDR 177
           +L  E++E+ R++    + I  L+  A     E TG   E++  L  LLA  +G D+
Sbjct: 239 KLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDK 295


>PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteasome
           regulatory subunit)
          Length = 421

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 121 ELTEEMWELHRRRLEVNMLIWGLEVSATEHKGEETGTMGEIEAELTSLLATREGLDR 177
           +L  E++E+ R++    + I  L+  A     E TG   E++  L  LLA  +G D+
Sbjct: 239 KLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDK 295


>TRDN_RABIT (Q28820) Triadin
          Length = 705

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 13/41 (31%), Positives = 23/41 (55%)

Query: 20  EAVTAKRHTPPKARGRGLAKQRDPPGNDTYHPKSQASHPPQ 60
           +AVT ++H  PK   +   ++++PP   T  PKS +   P+
Sbjct: 555 KAVTTEKHVKPKPAKKAEHQEKEPPSIKTDKPKSTSKGMPE 595


>DGT1_RHIME (Q92Q32) Deoxyguanosinetriphosphate
           triphosphohydrolase-like protein
          Length = 405

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 21/47 (44%), Positives = 27/47 (56%), Gaps = 1/47 (2%)

Query: 105 TEDLDPQLKAGLLTFLELTEEMWELHRRRLEVNMLIWGLEVSATEHK 151
           T D+D  L+AG LTF E+ EE+  L R   EV+    GLE S   H+
Sbjct: 220 THDIDDGLRAGYLTF-EMLEEIPFLARLMREVHDRYPGLESSRFTHE 265


>Y586_METJA (Q58006) Putative HTH-type transcriptional regulator
           MJ0586
          Length = 170

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 21/58 (36%), Positives = 29/58 (49%), Gaps = 2/58 (3%)

Query: 102 GLLTEDLDPQLKAGLLTFLELTEEMWELHRRRLEVNMLIWGLEVSATEHKGEETGTMG 159
           GL  E+L  +LK    T  +   E +EL     E+ +L   L++S TE  GEET   G
Sbjct: 98  GLSIEELAKKLKMKASTLQKF--ERYELEPNEKEIKILEKELKISLTESIGEETSYYG 153


>TERM_BPLP7 (P16937) DNA packaging protein gp3 (Terminase small
           subunit)
          Length = 162

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 23/107 (21%)

Query: 43  PPGNDTYHPKSQASHPPQDKMTSPEA-------YLKALRAEALDCNLYYSYQTQVTAP-- 93
           P GN  +  +S  SH    K  SPEA       Y + + A  L     +SYQ +VT    
Sbjct: 4   PKGNRFWEARS--SHGRNPKFESPEALWAACCEYFEWVEANPLWEMKAFSYQGEVTQEPI 61

Query: 94  GRIRSLVSGLLTEDLDPQLKAGLLTFLELTEEMWELHRRRLEVNMLI 140
            ++R++               GL  FL++T E W  +R R +++ ++
Sbjct: 62  AKMRAMTI------------TGLTLFLDVTLETWRQYRVREDLSEVV 96


>EXTN_TOBAC (P13983) Extensin precursor (Cell wall
           hydroxyproline-rich glycoprotein)
          Length = 620

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 17/59 (28%), Positives = 25/59 (41%), Gaps = 2/59 (3%)

Query: 8   GHRPIRPCHVRKEAVTAKRHTPPKARGRGLAKQRDPPGNDTYHPKSQASHPPQDKMTSP 66
           G RP  P H    A  +  HTPP+ +     ++  PP    + P    + PP   + SP
Sbjct: 138 GQRPPSPSH--GHAPPSGGHTPPRGQHPPSHRRPSPPSRHGHPPPPTYAQPPPTPIYSP 194


>CD2_RAT (P08921) T-cell surface antigen CD2 precursor (T-cell
           surface antigen T11/Leu-5) (LFA-2) (LFA-3 receptor)
           (OX-34 antigen)
          Length = 344

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 5   ETKGHRPIRPCHVRKEAVTAKRHTPPKARGRGLAKQRDPP 44
           +T GHRP+ P H  +E    KR   P   G  + +Q+ PP
Sbjct: 285 QTPGHRPLPPSHRNREHQPKKR---PPPSGTQVHQQKGPP 321


>Y4DM_RHISN (P55412) Hypothetical 45.3 kDa protein y4dM
          Length = 409

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 17/45 (37%), Positives = 19/45 (41%)

Query: 41  RDPPGNDTYHPKSQASHPPQDKMTSPEAYLKALRAEALDCNLYYS 85
           RD PG  T HP      PP D+    EA   ALR       L +S
Sbjct: 103 RDLPGAVTVHPSEGDDAPPDDEQAIVEARPNALRFSLAGVQLKFS 147


>TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome
            protein)
          Length = 1411

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 31/143 (21%), Positives = 55/143 (37%), Gaps = 24/143 (16%)

Query: 12   IRPCHVRKEAVTAKRHTPPKARGRGLAKQRDPPGNDTYHPKS------------------ 53
            + P + +    T K  + P      LA + DP G     P+                   
Sbjct: 1134 LTPANSQASKATPKLDSSPSVSST-LAAKDDPDGKQEAKPQQAAGMLSPKTGGKEAASGT 1192

Query: 54   --QASHPPQDKMTSPEAYLKALRAEALDCNLYYSYQTQVTAPGRIRSLVSGLLTEDLDPQ 111
              Q S  P+    +P+A   AL++    C L   +        ++++ V  +LTE L+ +
Sbjct: 1193 TPQKSRKPKKGAGNPQASTLALQSNITQCLLGQPWPLN---EAQVQASVVKVLTELLEQE 1249

Query: 112  LKAGLLTFLELTEEMWELHRRRL 134
             K  + T  E + + WE  +R+L
Sbjct: 1250 RKKVVDTTKESSRKGWESRKRKL 1272


>Y085_BUCBP (Q89AY5) Hypothetical UPF0011 protein bbp085
          Length = 292

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 20/78 (25%), Positives = 40/78 (50%), Gaps = 2/78 (2%)

Query: 116 LLTFLELTEEMWELHRRRLEVNMLIWGLEVSATEHKGEETGTMGEIEAELTSLLATREGL 175
           ++TF +   + WE+ ++    N+LIW L+ + T  KGE    +     + T+L++     
Sbjct: 189 IITFAKELTKKWEIIQKNTSYNILIW-LKQNYTYKKGEIVIIISGYNNKNTNLISDAVLK 247

Query: 176 DRDLGAVHLRYN-AMRVT 192
              +   HL +N A+++T
Sbjct: 248 TLKILKTHLSFNKAIKIT 265


>HMX_STRPU (Q26656) Homeobox protein (SpHmx) (H6-like) (Fragment)
          Length = 405

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 10  RPIRPCHVRKEAVTAKRHTPP----KARGRGLAKQRDPPGNDTYHPKSQASHPPQDKMTS 65
           +P+RP H + +  + + HTPP    + +G  +     P       P+S    P    M+S
Sbjct: 45  QPLRPAHYQDDDDSYRTHTPPPSQPRTKGFSIESILSPTDKHRKSPRSPPMSPSSPSMSS 104


>GOA3_MOUSE (P55937) Golgi autoantigen, golgin subfamily A member 3
            (Golgin-160) (Male-enhanced antigen-2) (MEA-2)
          Length = 1447

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 19/73 (26%), Positives = 34/73 (46%)

Query: 103  LLTEDLDPQLKAGLLTFLELTEEMWELHRRRLEVNMLIWGLEVSATEHKGEETGTMGEIE 162
            LL + LD Q+        E+ +  WEL ++  E+  L   L+++  + K E  GT   ++
Sbjct: 1223 LLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQSLKQQLDLTEQQGKKELEGTQQTLQ 1282

Query: 163  AELTSLLATREGL 175
               + L   +E L
Sbjct: 1283 TIKSELEMVQEDL 1295


>CD2_MOUSE (P08920) T-cell surface antigen CD2 precursor (T-cell
           surface antigen T11/Leu-5) (LFA-2) (LFA-3 receptor)
          Length = 344

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 5   ETKGHRPIRPCHVRKEAVTAKRHTPPKARGRGLAKQRDPP 44
           +T GHRP+ P H  +E    KR   P   G  + +Q+ PP
Sbjct: 284 QTPGHRPLPPGHRTREHQQKKR---PPPSGTQIHQQKGPP 320


>YIEM_ECOLI (P03818) Hypothetical protein yieM
          Length = 483

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 19/67 (28%), Positives = 31/67 (45%)

Query: 85  SYQTQVTAPGRIRSLVSGLLTEDLDPQLKAGLLTFLELTEEMWELHRRRLEVNMLIWGLE 144
           +++T V  P  +   V GL   D   +L    L  L +TE  +E +RR +E  +L + L 
Sbjct: 237 TFRTMVREPATVPEQVDGLQQSDDILRLLPPELATLGITELEYEFYRRLVEKQLLTYRLH 296

Query: 145 VSATEHK 151
             +   K
Sbjct: 297 GESWREK 303


>Y2F9_ENCCU (Q8STG8) Hypothetical protein
           ECU02_1590/ECU04_0060/ECU08_2120
          Length = 207

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 19/100 (19%)

Query: 18  RKEAVTAKRHTPPKARGRGLAKQ--------RDPPGNDTYHPKSQASHPPQDKM------ 63
           R E+    R  PP+    G  KQ        R  PGN    P ++ + PP+ K       
Sbjct: 19  RSESSARLRCQPPRTNNCGTFKQPPSVAATSRPKPGNPFLQPPTKGTPPPKKKKKNHTEG 78

Query: 64  -----TSPEAYLKALRAEALDCNLYYSYQTQVTAPGRIRS 98
                 +PE   K    E+        + T +T P  + S
Sbjct: 79  CHTHEANPEPNTKHTETESPKPQTSTQHHTPITIPSSLLS 118


>H15_MOUSE (P43276) Histone H1.5 (H1 VAR.5) (H1b)
          Length = 222

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 21/67 (31%), Positives = 29/67 (42%), Gaps = 2/67 (2%)

Query: 2   TLGETKGHRPIRPCHVRKEAVTAKRHTPPKARGRGLAKQRDPPGNDTYHPKSQASHPPQD 61
           TL +TKG        + K+A + +    PKA+  G AK + P G     PK  A      
Sbjct: 91  TLVQTKGTGASGSFKLNKKAASGE--AKPKAKKTGAAKAKKPAGATPKKPKKTAGAKKTV 148

Query: 62  KMTSPEA 68
           K T  +A
Sbjct: 149 KKTPKKA 155


>FRI_ARATH (Q9FDW0) FRIGIDA protein
          Length = 609

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 12/27 (44%), Positives = 16/27 (58%)

Query: 26  RHTPPKARGRGLAKQRDPPGNDTYHPK 52
           RH+P + R  GL+ QR P  N +  PK
Sbjct: 583 RHSPSEERYLGLSNQRSPRSNSSLDPK 609


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.316    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,779,982
Number of Sequences: 164201
Number of extensions: 951715
Number of successful extensions: 2426
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2413
Number of HSP's gapped (non-prelim): 23
length of query: 195
length of database: 59,974,054
effective HSP length: 104
effective length of query: 91
effective length of database: 42,897,150
effective search space: 3903640650
effective search space used: 3903640650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)