BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0082b.1
         (122 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GLPQ_ECOLI (P09394) Glycerophosphoryl diester phosphodiesterase,...   218  2e-57
GLPQ_HAEIN (Q06282) Glycerophosphoryl diester phosphodiesterase ...   184  4e-47
GLPQ_TREPA (O30405) Glycerophosphoryl diester phosphodiesterase ...   163  6e-41
P33_MYCPE (Q50368) Lipoprotein p33 precursor                           30  0.96
MOEA_STAEP (Q8CNE1) Molybdopterin biosynthesis protein moeA            30  0.96
DOC4_HUMAN (Q8N1I0) Dedicator of cytokinesis protein 4                 30  0.96
FLIF_BUCAP (Q8KA45) Flagellar M-ring protein                           29  1.6
E2K2_HUMAN (P19525) Interferon-induced, double-stranded RNA-acti...    29  1.6
YHB3_YEAST (P38747) Hypothetical 36.1 kDa protein in YLF2-PRPS4 ...    29  2.1
CLPB_HELPY (P71404) Chaperone clpB                                     29  2.1
FTSK_HAEIN (P45264) DNA translocase ftsK                               28  2.8
Y041_METJA (Q60346) Hypothetical protein MJ0041                        27  6.2
PDAA_BACSU (O34928) Probable polysaccharide deacetylase pdaA pre...    27  6.2
KKA3_ENTFA (P00554) Aminoglycoside 3'-phosphotransferase (EC 2.7...    27  6.2
HS75_ZYGRO (Q707X3) Heat shock protein SSB                             27  8.1

>GLPQ_ECOLI (P09394) Glycerophosphoryl diester phosphodiesterase,
           periplasmic precursor (EC 3.1.4.46)
           (Glycerophosphodiester phosphodiesterase)
          Length = 358

 Score =  218 bits (555), Expect = 2e-57
 Identities = 98/122 (80%), Positives = 111/122 (90%)

Query: 1   EEIEFVQGLNHSTGKNIGIYPEIKAPWFHKQEGKDISSKVLAVLKQYGYTGKNDNVYLQC 60
           EEIEFVQGLNHSTGKNIGIYPEIKAPWFH QEGKDI++K L VLK+YGYTGK+D VYLQC
Sbjct: 150 EEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQC 209

Query: 61  FDANELKRIKNELEPKLGMDLKLVQLIAYNDWQETYEQKADGKWVEYDYDWMFKPGAMKK 120
           FDA+ELKRIKNELEPK+GM+L LVQLIAY DW ET +++ DG WV Y+YDWMFKPGAMK+
Sbjct: 210 FDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQ 269

Query: 121 IA 122
           +A
Sbjct: 270 VA 271


>GLPQ_HAEIN (Q06282) Glycerophosphoryl diester phosphodiesterase
           precursor (EC 3.1.4.46) (Glycerophosphodiester
           phosphodiesterase) (Surface-exposed lipoprotein D)
           (Protein D) (Immunoglobulin D-binding protein)
           (IgD-binding protein)
          Length = 364

 Score =  184 bits (466), Expect = 4e-47
 Identities = 84/121 (69%), Positives = 98/121 (80%)

Query: 1   EEIEFVQGLNHSTGKNIGIYPEIKAPWFHKQEGKDISSKVLAVLKQYGYTGKNDNVYLQC 60
           +EIEF+QGL  STGK +GIYPEIKAPWFH Q GKDI+++ L VLK+YGY  K D VYLQ 
Sbjct: 154 DEIEFIQGLEKSTGKKVGIYPEIKAPWFHHQNGKDIATETLKVLKKYGYDKKTDMVYLQT 213

Query: 61  FDANELKRIKNELEPKLGMDLKLVQLIAYNDWQETYEQKADGKWVEYDYDWMFKPGAMKK 120
           FD NELKRIK EL P++GMDLKLVQLIAY DW+ET E+   G WV Y+YDWMFKPGAM +
Sbjct: 214 FDFNELKRIKTELLPQMGMDLKLVQLIAYTDWKETQEKDPKGYWVNYNYDWMFKPGAMAE 273

Query: 121 I 121
           +
Sbjct: 274 V 274


>GLPQ_TREPA (O30405) Glycerophosphoryl diester phosphodiesterase
           precursor (EC 3.1.4.46) (Glycerophosphodiester
           phosphodiesterase)
          Length = 356

 Score =  163 bits (413), Expect = 6e-41
 Identities = 72/122 (59%), Positives = 97/122 (79%)

Query: 1   EEIEFVQGLNHSTGKNIGIYPEIKAPWFHKQEGKDISSKVLAVLKQYGYTGKNDNVYLQC 60
           EE++F++GL  +TGK IGIY EIK PWFH QEGKDI++  LA+LK+YGY  ++D VY+Q 
Sbjct: 144 EELQFIRGLEQTTGKKIGIYSEIKVPWFHHQEGKDIAALTLALLKKYGYQSRSDLVYVQT 203

Query: 61  FDANELKRIKNELEPKLGMDLKLVQLIAYNDWQETYEQKADGKWVEYDYDWMFKPGAMKK 120
           +D NELKRIK EL PK  M++KL+Q +AY D +ET E+ + GKW+ Y+Y+WMF+PG M+K
Sbjct: 204 YDFNELKRIKRELLPKYEMNVKLIQRVAYTDQRETQEKDSRGKWINYNYNWMFEPGGMQK 263

Query: 121 IA 122
           IA
Sbjct: 264 IA 265


>P33_MYCPE (Q50368) Lipoprotein p33 precursor
          Length = 376

 Score = 30.0 bits (66), Expect = 0.96
 Identities = 17/43 (39%), Positives = 20/43 (45%)

Query: 16  NIGIYPEIKAPWFHKQEGKDISSKVLAVLKQYGYTGKNDNVYL 58
           NIGI  E+ AP       K    +V+ VLK  GYT   D   L
Sbjct: 268 NIGIKEEVTAPTEKPNLAKTDKGEVMKVLKALGYTQTGDETKL 310


>MOEA_STAEP (Q8CNE1) Molybdopterin biosynthesis protein moeA
          Length = 419

 Score = 30.0 bits (66), Expect = 0.96
 Identities = 22/58 (37%), Positives = 31/58 (52%), Gaps = 5/58 (8%)

Query: 22  EIKAPWFHKQEGKDISSKVLAVLKQYGYT----GKNDNVYLQCFDANELKRIKNELEP 75
           EIKA      +G  I+S V+AVL  YGYT     +   V +     +EL  +++ELEP
Sbjct: 147 EIKAGDIVLHKGMRINSGVIAVLATYGYTKVRVARKPTVAV-IATGSELLEVEDELEP 203


>DOC4_HUMAN (Q8N1I0) Dedicator of cytokinesis protein 4
          Length = 1966

 Score = 30.0 bits (66), Expect = 0.96
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 27   WFHKQEG--KDISSKVLAVLKQYGYTGKNDNVYLQCFDANELKRIKNELEPKLGMDL--- 81
            W  ++ G  K + +K++  L      GK D  Y + F++  LK+I+ E   + G+ L   
Sbjct: 1095 WEQRRSGNFKQVEAKLIDKLDSLMSEGKGDETYRELFNSILLKKIERETWRESGVSLIAT 1154

Query: 82   ---KLVQLIAYNDWQETYEQKADGK 103
                + +L+ Y D  +  E   DGK
Sbjct: 1155 VTRLMERLLDYRDCMKMGE--VDGK 1177


>FLIF_BUCAP (Q8KA45) Flagellar M-ring protein
          Length = 556

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 14/78 (17%)

Query: 35  DISSKVLAVLKQYGYTGKNDNVYLQCFDANELK-----------RIKNELEPKLGMDLKL 83
           D+S + + ++ Q+G    N ++ L   D  +L+           RIKN LEP LG +   
Sbjct: 206 DLSIENITIIDQFGKLLNNSSLGLNQIDDLKLRYSEEVESRYRNRIKNILEPLLGFNNVY 265

Query: 84  VQLIA---YNDWQETYEQ 98
            Q+ A   +N  ++T E+
Sbjct: 266 AQVTAQINFNSHEKTQEK 283


>E2K2_HUMAN (P19525) Interferon-induced, double-stranded
           RNA-activated protein kinase (EC 2.7.1.-)
           (Interferon-inducible RNA-dependent protein kinase) (p68
           kinase) (P1/eIF-2A protein kinase)
          Length = 551

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 61  FDANELKRIKNELEPKLGMDLKLVQLIAYNDWQETYEQK--ADGK 103
           FD  ++K  K  ++ + GMD K ++LI    + + ++ K   DGK
Sbjct: 247 FDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGK 291


>YHB3_YEAST (P38747) Hypothetical 36.1 kDa protein in YLF2-PRPS4
          intergenic region
          Length = 307

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 18/62 (29%), Positives = 31/62 (49%), Gaps = 3/62 (4%)

Query: 13 TGKNIGIYPEIKAPWFHKQEGKDISSKVLAVLKQYGYTGKNDNVYLQCFDANELKRIKNE 72
          +G+N+    +I A   H++E KD+ +K+  + KQ     K   V  +C D  +  + K E
Sbjct: 6  SGENLENMEDILAR--HRKENKDLQNKITGMKKQ-ATKSKRKEVNSKCLDLQDKLKTKQE 62

Query: 73 LE 74
           E
Sbjct: 63 NE 64


>CLPB_HELPY (P71404) Chaperone clpB
          Length = 856

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 15/76 (19%), Positives = 41/76 (53%), Gaps = 7/76 (9%)

Query: 16  NIGIYPEIKAPWFHKQEGKDISSKVLAVLKQYGYTGKNDNVYLQCFDANEL----KRIKN 71
           N+G++  +  P+    + K++   + ++ K      KND+  L+  +   +    K ++N
Sbjct: 117 NMGLFESVLKPYL---DAKELQKTLESLRKGRTIQDKNDDSNLESLEKFGIDLTQKALEN 173

Query: 72  ELEPKLGMDLKLVQLI 87
           +L+P +G D ++++++
Sbjct: 174 KLDPVIGRDEEIIRMM 189


>FTSK_HAEIN (P45264) DNA translocase ftsK
          Length = 529

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 7/66 (10%)

Query: 33  GKDISSKVLAV-------LKQYGYTGKNDNVYLQCFDANELKRIKNELEPKLGMDLKLVQ 85
           GKDIS K + V       L   G TG   +V +     + L R++ E    + +D K+V+
Sbjct: 169 GKDISGKPVIVDLAKMPHLLVAGSTGSGKSVGVNTMILSLLYRVQPEDVKFIMIDPKVVE 228

Query: 86  LIAYND 91
           L  YND
Sbjct: 229 LSVYND 234


>Y041_METJA (Q60346) Hypothetical protein MJ0041
          Length = 454

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 1   EEIEFVQGLNHSTGKNIGIYP-EIK---APW----FHKQEGKDISSKVLAVLKQYGYTGK 52
           EE+E ++ L  S    I +   EI+    PW    F+KQ+ + + +K + +LK+Y +   
Sbjct: 78  EELELLKALAKSGVDEIRLEDIEIEKENCPWCRGIFNKQKMEKLLNKAIELLKEYDF--- 134

Query: 53  NDNVYLQCFDANELKRIKNELEPKLGMDLK 82
            D   +      E+K ++ E+E +    +K
Sbjct: 135 -DTFLIGTHIPEEIKDLEKEIETEFMESIK 163


>PDAA_BACSU (O34928) Probable polysaccharide deacetylase pdaA
           precursor (EC 3.-.-.-)
          Length = 263

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 26/79 (32%), Positives = 36/79 (44%), Gaps = 18/79 (22%)

Query: 47  YGYTGKNDNVYLQ----CFDANELKRIKNELEPKLGMDLKLVQLIAYNDWQETYEQKADG 102
           Y  TGK DN+YL+     F    LK  K     +LG    +   +A+ DW+   +     
Sbjct: 151 YKITGKQDNLYLRPPRGVFSEYVLKETK-----RLGYQ-TVFWSVAFVDWKINNQ----- 199

Query: 103 KWVEYDYDWMFK---PGAM 118
           K  +Y YD M K   PGA+
Sbjct: 200 KGKKYAYDHMIKQAHPGAI 218


>KKA3_ENTFA (P00554) Aminoglycoside 3'-phosphotransferase (EC
           2.7.1.95) (Kanamycin kinase, type III)
           (Neomycin-kanamycin phosphotransferase, type III)
           (APH(3')III)
          Length = 264

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 20/75 (26%), Positives = 37/75 (48%), Gaps = 10/75 (13%)

Query: 45  KQYGYTGKNDNVYLQCFDAN------ELKRIKNE---LEPKLGMDLKLVQLIAYNDWQET 95
           K Y   G+N+N+YL+  D+       +++R K+    LE KL +  K++    ++ W   
Sbjct: 30  KVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVP-KVLHFERHDGWSNL 88

Query: 96  YEQKADGKWVEYDYD 110
              +ADG     +Y+
Sbjct: 89  LMSEADGVLCSEEYE 103


>HS75_ZYGRO (Q707X3) Heat shock protein SSB
          Length = 612

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 13/32 (40%), Positives = 18/32 (55%)

Query: 50  TGKNDNVYLQCFDANELKRIKNELEPKLGMDL 81
           T  N ++  Q FD N L+  KNE + K G D+
Sbjct: 224 TSGNTHLGGQDFDTNMLEHFKNEFKKKTGNDI 255


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.315    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,106,360
Number of Sequences: 164201
Number of extensions: 641493
Number of successful extensions: 1151
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1143
Number of HSP's gapped (non-prelim): 15
length of query: 122
length of database: 59,974,054
effective HSP length: 98
effective length of query: 24
effective length of database: 43,882,356
effective search space: 1053176544
effective search space used: 1053176544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)