BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0079c.8
(757 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
LPXB_CHLPN (Q9Z6U3) Lipid-A-disaccharide synthase (EC 2.4.1.182) 35 0.96
RPC1_BPD3 (Q37906) Repressor protein CI 33 2.1
ASPM_MOUSE (Q8CJ27) Abnormal spindle-like microcephaly-associate... 33 2.8
2AAA_SCHPO (Q9UT08) Protein phosphatase PP2A regulatory subunit ... 33 3.6
UAB2_PIG (P46202) Uteroferrin-associated basic protein 2 precurs... 32 6.2
RPOB_RICMA (Q9RH43) DNA-directed RNA polymerase beta chain (EC 2... 32 6.2
RRP2_IAZTF (P13177) RNA-directed RNA polymerase subunit P2 (EC 2... 32 8.1
PLSB_CAEEL (Q22949) Probable glycerol-3-phosphate acyltransferas... 32 8.1
GC4_HUMAN (P01861) Ig gamma-4 chain C region 32 8.1
>LPXB_CHLPN (Q9Z6U3) Lipid-A-disaccharide synthase (EC 2.4.1.182)
Length = 604
Score = 34.7 bits (78), Expect = 0.96
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 601 NYFHLPTKYLPFRWRQESSLVPTSSHIINCNDGSSFEFRSLVQWLQVESLKTKD 654
N FHLP W H+I C + F R L+QW +ES TKD
Sbjct: 122 NIFHLPLPPAQLSW-----------HLIGCLGLAIFSGRFLIQWFYIESNNTKD 164
>RPC1_BPD3 (Q37906) Repressor protein CI
Length = 223
Score = 33.5 bits (75), Expect = 2.1
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 256 FKYDFTLDENNKLEH--IIWAFGDSIRAYEAFGDVVVFDTT 294
FK D+ N+K E+ +I+A GDS+ Y GDVV+FDT+
Sbjct: 112 FKRDWLKRVNSKPENLFVIYADGDSMEPYIFEGDVVLFDTS 152
>ASPM_MOUSE (Q8CJ27) Abnormal spindle-like microcephaly-associated
protein homolog (Calmodulin-binding protein 1) (Spindle
and hydroxyurea checkpoint abnormal protein)
(Calmodulin-binding protein Sha1)
Length = 3122
Score = 33.1 bits (74), Expect = 2.8
Identities = 24/67 (35%), Positives = 31/67 (45%), Gaps = 7/67 (10%)
Query: 71 CLFARKSGFSIRRDHIYKSTKN-----QSENNPLGIYKREFVCHRAGITKQSKVSEVESQ 125
C A K G R H+Y TK QS + + KR CH+A +T QSK +Q
Sbjct: 1971 CYRAYKVGKEQR--HLYLKTKAAVVTLQSAYRGMKVRKRVAECHKAAVTIQSKFRAYRTQ 2028
Query: 126 RKRKTSR 132
+K T R
Sbjct: 2029 KKYTTYR 2035
>2AAA_SCHPO (Q9UT08) Protein phosphatase PP2A regulatory subunit A
(PR65) (Protein phosphatase 2A 65 kDa regulatory
subunit)
Length = 590
Score = 32.7 bits (73), Expect = 3.6
Identities = 34/162 (20%), Positives = 66/162 (39%), Gaps = 37/162 (22%)
Query: 86 IYKSTKNQSENNPLGIYKREFVCHRAGITKQSKVSEVESQRKRKTSRCNCGAKMLVTTRT 145
+Y + +QSEN + + R+ H + E+ R+ + NC + + T+
Sbjct: 150 LYCAAYSQSENPAVKVSLRQSFSH---------LCHDEAPMVRRPAATNCAKFVFLVTKQ 200
Query: 146 IGFEEKWVVKYFHNHHNHQLLDDKEVQFLPAYRSIPIVDQDRIMLLSKAGCSISLIIRVL 205
+E F+P + S+ DQD + LL S +++ +
Sbjct: 201 EAIDE----------------------FIPLFNSLSNDDQDSVRLL-----SFDIMVSLA 233
Query: 206 ELEKGIDTCTLPFLERDIRNFIQSQSSIGKESDASNVLKLCK 247
E+ K D+ +L + +R+F+ S + A+N +KL K
Sbjct: 234 EVLKS-DSEIRHYLLQPLRSFVSDSSWRTRYMVAANFVKLAK 274
>UAB2_PIG (P46202) Uteroferrin-associated basic protein 2 precursor
(UABP-2)
Length = 420
Score = 32.0 bits (71), Expect = 6.2
Identities = 26/97 (26%), Positives = 43/97 (43%), Gaps = 7/97 (7%)
Query: 177 YRSIPIVDQDRIMLLSKAGCSISLIIRVLELEKGIDTCTLPFLERDIRNF--IQSQSSIG 234
++++ I D + M+ S SISL L L T + LERD+RN ++
Sbjct: 62 FKTLLIEDPRKNMIFSPVSISISLATLSLGLRSATRTNAIDVLERDLRNLRVWDKHQALQ 121
Query: 235 KESDASNVLKLCKSLKDRDDSFKYDFTLDENNKLEHI 271
+ + L+ K LK +D F +D N K+ +
Sbjct: 122 HLVEMLHELEKKKQLKHKD-----IFFIDRNKKMNQM 153
>RPOB_RICMA (Q9RH43) DNA-directed RNA polymerase beta chain (EC
2.7.7.6) (RNAP beta subunit) (Transcriptase beta chain)
(RNA polymerase beta subunit)
Length = 1373
Score = 32.0 bits (71), Expect = 6.2
Identities = 23/71 (32%), Positives = 42/71 (58%), Gaps = 9/71 (12%)
Query: 138 KMLVTT--RTIGFEEKWVVKYFHNHHNHQLLDDK--EVQFLP----AYR-SIPIVDQDRI 188
K+ +TT R IG + ++K+++N ++L+ +K V+F+P A+R + +VD D
Sbjct: 218 KLYITTLLRAIGMSTEEIIKFYYNSVTYKLVKNKGWAVKFIPQHITAHRLTSDLVDADTG 277
Query: 189 MLLSKAGCSIS 199
+L KAG I+
Sbjct: 278 NILLKAGQKIT 288
>RRP2_IAZTF (P13177) RNA-directed RNA polymerase subunit P2 (EC
2.7.7.48) (Polymerase acidic protein) (PA)
Length = 716
Score = 31.6 bits (70), Expect = 8.1
Identities = 22/87 (25%), Positives = 34/87 (38%), Gaps = 12/87 (13%)
Query: 608 KYLPFRWRQESSLVPTSSHIINCND--------GSSFEFRSLVQWLQVESLKTKDREEVA 659
K P +W ++ P +C D G EFRSL W+Q E K + + +
Sbjct: 362 KTSPLKWALGENMAPEKVDFEDCKDVSDLKQYDGDEPEFRSLASWIQNEFNKACELTDSS 421
Query: 660 IRELERVIRIITDMPEEQEHAVDMEPN 686
E++ + I + EH M N
Sbjct: 422 WLEIDEIGEDIAPL----EHIASMRRN 444
>PLSB_CAEEL (Q22949) Probable glycerol-3-phosphate acyltransferase,
mitochondrial precursor (EC 2.3.1.15) (GPAT)
Length = 718
Score = 31.6 bits (70), Expect = 8.1
Identities = 14/47 (29%), Positives = 27/47 (56%)
Query: 514 GFPIEEQAASMLTPYAFKLLQHEIELSTKYASTEEGENSYIVRFHTK 560
G+ ++ S L YAF+ L+ +E++ +Y S +E +S+I + K
Sbjct: 456 GYQSKKTKGSALVKYAFEKLESCVEVTDEYVSPKESHSSFITLAYNK 502
>GC4_HUMAN (P01861) Ig gamma-4 chain C region
Length = 327
Score = 31.6 bits (70), Expect = 8.1
Identities = 20/72 (27%), Positives = 36/72 (49%), Gaps = 1/72 (1%)
Query: 637 EFRSLVQWLQVESLKTKDREEVAIRELERVIRIITDMPEEQEHAVDMEPNVPNSNDCDVG 696
+F V ++V + KTK REE RV+ ++T + ++ + + + V N
Sbjct: 154 QFNWYVDGVEVHNAKTKPREE-QFNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKGLPSSI 212
Query: 697 NPIISKSKGRPK 708
ISK+KG+P+
Sbjct: 213 EKTISKAKGQPR 224
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,606,424
Number of Sequences: 164201
Number of extensions: 4076249
Number of successful extensions: 9068
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 9064
Number of HSP's gapped (non-prelim): 11
length of query: 757
length of database: 59,974,054
effective HSP length: 118
effective length of query: 639
effective length of database: 40,598,336
effective search space: 25942336704
effective search space used: 25942336704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 70 (31.6 bits)
Lotus: description of TM0079c.8