BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0079c.14
(171 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (... 33 0.25
GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2 30 2.1
GR10_BRANA (Q05966) Glycine-rich RNA-binding protein 10 30 2.1
LORI_MOUSE (P18165) Loricrin 30 2.7
EP84_HCMVA (P17151) Early phosphoprotein P84 30 2.7
EP34_HCMVA (P16768) Early phosphoprotein P34 30 2.7
HIS9_BACHD (Q9K801) Histidinol-phosphatase (EC 3.1.3.15) (HolPase) 30 3.5
C135_DROME (Q9VGB5) Probable cytochrome P450 313a5 (EC 1.14.-.-)... 30 3.5
GRP1_PETHY (P09789) Glycine-rich cell wall structural protein 1 ... 29 4.6
TWS1_MOUSE (P26687) Twist related protein 1 (M-twist) 29 6.1
NOA1_MOUSE (Q9CY66) Nucleolar protein family A member 1 (snoRNP ... 29 6.1
GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A 29 6.1
GDF7_MOUSE (P43029) Growth/differentiation factor 7 precursor (G... 29 6.1
EVX2_MOUSE (P49749) Homeobox even-skipped homolog protein 2 (EVX-2) 29 6.1
CSE1_ARATH (Q9ZPY7) Importin-alpha re-exporter (Cellular apoptos... 29 6.1
CAZ_DROME (Q27294) RNA-binding protein cabeza (Sarcoma-associate... 29 6.1
PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacema... 28 7.9
C4AE_DROME (O46054) Cytochrome P450 4ae1 (EC 1.14.-.-) (CYPIVAE1) 28 7.9
BIG1_HUMAN (Q9Y6D6) Brefeldin A-inhibited guanine nucleotide-exc... 28 7.9
BIG1_BOVIN (O46382) Brefeldin A-inhibited guanine nucleotide-exc... 28 7.9
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1
(hnRNP core protein A1-A) (PEN repeat clone P9)
Length = 365
Score = 33.5 bits (75), Expect = 0.25
Identities = 15/29 (51%), Positives = 16/29 (54%)
Query: 3 GAESEGGGGGGGCAVRGGNIYWGRKHATD 31
G S GGGGGGG GGN WG + D
Sbjct: 257 GNNSFGGGGGGGGGYGGGNNSWGNNNPWD 285
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2
Length = 168
Score = 30.4 bits (67), Expect = 2.1
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 4 AESEGGGGGGGCAVRGGNIYWGRK 27
A+S GGGGGGG GG Y GR+
Sbjct: 84 AQSRGGGGGGGGYGGGGGGYGGRE 107
>GR10_BRANA (Q05966) Glycine-rich RNA-binding protein 10
Length = 169
Score = 30.4 bits (67), Expect = 2.1
Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Query: 4 AESEGGGGGGGCAVRGGNIYWGR 26
A+S GGGGGGG RGG Y GR
Sbjct: 82 AQSRGGGGGGG---RGGGGYGGR 101
>LORI_MOUSE (P18165) Loricrin
Length = 486
Score = 30.0 bits (66), Expect = 2.7
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 3 GAESEGGGGGGGCAVRGG 20
G S GGGGGGGC GG
Sbjct: 381 GGGSSGGGGGGGCYSSGG 398
>EP84_HCMVA (P17151) Early phosphoprotein P84
Length = 684
Score = 30.0 bits (66), Expect = 2.7
Identities = 13/30 (43%), Positives = 18/30 (59%)
Query: 2 RGAESEGGGGGGGCAVRGGNIYWGRKHATD 31
+ + S GGGGGGG GG G +H++D
Sbjct: 196 KSSSSAGGGGGGGAGGGGGGGGSGGQHSSD 225
>EP34_HCMVA (P16768) Early phosphoprotein P34
Length = 268
Score = 30.0 bits (66), Expect = 2.7
Identities = 13/30 (43%), Positives = 18/30 (59%)
Query: 2 RGAESEGGGGGGGCAVRGGNIYWGRKHATD 31
+ + S GGGGGGG GG G +H++D
Sbjct: 196 KSSSSAGGGGGGGAGGGGGGGGSGGQHSSD 225
>HIS9_BACHD (Q9K801) Histidinol-phosphatase (EC 3.1.3.15) (HolPase)
Length = 273
Score = 29.6 bits (65), Expect = 3.5
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 57 SSLGWNSLVCYAHYLS----AFRDESTVPLAFCVVDELIEELKTKSC 99
SS+GWN L Y H LS A+RD+ T+ + V + IE + + C
Sbjct: 57 SSIGWNELDDYIHTLSSIKKAYRDQLTIYIGLEV--DFIEGFEEEIC 101
>C135_DROME (Q9VGB5) Probable cytochrome P450 313a5 (EC 1.14.-.-)
(CYPCCCXIIIA5)
Length = 487
Score = 29.6 bits (65), Expect = 3.5
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 88 DELIEELKTKSCPVVFAAFSAGSKACLYKVLQLIDGRCETPHCLHNYHL 136
D + E K P + FS G K CL L LI + L NY L
Sbjct: 408 DNFLPENKRARPPYSYLPFSKGKKTCLGWKLSLISAKLALAKILRNYML 456
>GRP1_PETHY (P09789) Glycine-rich cell wall structural protein 1
precursor
Length = 384
Score = 29.3 bits (64), Expect = 4.6
Identities = 14/30 (46%), Positives = 15/30 (49%)
Query: 3 GAESEGGGGGGGCAVRGGNIYWGRKHATDF 32
GA GGGGGGG GG + G H F
Sbjct: 248 GAAGGGGGGGGGGGGGGGGLGGGSGHGGGF 277
>TWS1_MOUSE (P26687) Twist related protein 1 (M-twist)
Length = 206
Score = 28.9 bits (63), Expect = 6.1
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 2 RGAESEGGGGGGGCAVRGG 20
RG +S GGGGGGG GG
Sbjct: 74 RGKKSAGGGGGGGAGGGGG 92
>NOA1_MOUSE (Q9CY66) Nucleolar protein family A member 1 (snoRNP
protein GAR1) (H/ACA ribonucleoprotein GAR1)
Length = 231
Score = 28.9 bits (63), Expect = 6.1
Identities = 15/33 (45%), Positives = 15/33 (45%)
Query: 2 RGAESEGGGGGGGCAVRGGNIYWGRKHATDFRG 34
RG G GGGG RGG GR FRG
Sbjct: 187 RGGRGGGRGGGGRGGGRGGGFRGGRGGGGGFRG 219
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A
Length = 169
Score = 28.9 bits (63), Expect = 6.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 2 RGAESEGGGGGGGCAVRGGNIYWG 25
RG+ + GGG GGG RGG Y G
Sbjct: 87 RGSGAGGGGRGGGGGYRGGGGYGG 110
>GDF7_MOUSE (P43029) Growth/differentiation factor 7 precursor
(GDF-7)
Length = 461
Score = 28.9 bits (63), Expect = 6.1
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 2 RGAESEGGGGGGGCAVRGG 20
RGA+ GGGGGGG GG
Sbjct: 322 RGAQGSGGGGGGGGGGGGG 340
>EVX2_MOUSE (P49749) Homeobox even-skipped homolog protein 2 (EVX-2)
Length = 475
Score = 28.9 bits (63), Expect = 6.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 2 RGAESEGGGGGGGCAVRGGN 21
RG GGGGGGG GG+
Sbjct: 415 RGGGGSGGGGGGGAGTAGGS 434
>CSE1_ARATH (Q9ZPY7) Importin-alpha re-exporter (Cellular apoptosis
susceptibility protein homolog)
Length = 972
Score = 28.9 bits (63), Expect = 6.1
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 25 GRKHATDFRGIVVIFAWVSVPQTLLQDFVNLYSSLGWNSLVCYAHYLSAFRDESTVPLAF 84
G +TD + FA + +P+ +D VN + L SL +L+ FR P A
Sbjct: 451 GASVSTDLIDVQNFFANIILPELQSRD-VNSFPMLKAGSL----KFLTMFRSHIPKPFAM 505
Query: 85 CVVDELIEELKTKSCPVVFAAFSAGSKACLYK 116
+ EL+ LK +S V A S K L K
Sbjct: 506 QLFPELVRFLKAESNVVHSYAASCIEKLLLVK 537
>CAZ_DROME (Q27294) RNA-binding protein cabeza (Sarcoma-associated
RNA-binding fly homolog) (P19)
Length = 399
Score = 28.9 bits (63), Expect = 6.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 3 GAESEGGGGGGGCAVRGGNIY 23
G GGGGGG RGGN Y
Sbjct: 58 GGSGNGGGGGGSWNDRGGNSY 78
>PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacemaker
protein Rigui) (mPER) (M-Rigui)
Length = 1291
Score = 28.5 bits (62), Expect = 7.9
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 7 EGGGGGGGCAVRGG 20
EGGG GGGC V GG
Sbjct: 1232 EGGGEGGGCGVGGG 1245
>C4AE_DROME (O46054) Cytochrome P450 4ae1 (EC 1.14.-.-) (CYPIVAE1)
Length = 496
Score = 28.5 bits (62), Expect = 7.9
Identities = 26/84 (30%), Positives = 38/84 (44%), Gaps = 6/84 (7%)
Query: 56 YSSLGWNSLVCYAHYLSAFRDES--TVPLAFCVVDELIEELKTKSCPVVFAAFSAGSKAC 113
Y +G N +V L RDE+ T PL F L EE S P + FSAG + C
Sbjct: 388 YIPVGTNVVVLLWQLL---RDEAIFTDPLVFQPERHLGEEAPRLS-PYSYIPFSAGPRNC 443
Query: 114 LYKVLQLIDGRCETPHCLHNYHLL 137
+ + L++ + + +Y LL
Sbjct: 444 IGQKFALLEMKTMVTKVIRHYQLL 467
>BIG1_HUMAN (Q9Y6D6) Brefeldin A-inhibited guanine nucleotide-exchange
protein 1 (Brefeldin A-inhibited GEP 1) (p200 ARF-GEP1)
(p200 ARF guanine nucleotide exchange factor)
Length = 1849
Score = 28.5 bits (62), Expect = 7.9
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 60 GWNSLVCYAHYLSAFRDESTVPLAFCVVDELIEELKTKSCPVVFAAFSAGSKACL 114
GW ++ H ++ +DES V LAF ++ + K P +F K CL
Sbjct: 1274 GWKNIFSVFHLAASDQDESIVELAFQTTGHIVTLVFEKHFPATIDSFQDAVK-CL 1327
>BIG1_BOVIN (O46382) Brefeldin A-inhibited guanine nucleotide-exchange
protein 1 (Brefeldin A-inhibited GEP 1) (p200 ARF-GEP1)
(p200 ARF guanine nucleotide exchange factor)
Length = 1849
Score = 28.5 bits (62), Expect = 7.9
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 60 GWNSLVCYAHYLSAFRDESTVPLAFCVVDELIEELKTKSCPVVFAAFSAGSKACL 114
GW ++ H ++ +DES V LAF ++ + K P +F K CL
Sbjct: 1274 GWKNIFSVFHLAASDQDESIVELAFQTTGHIVTLVFEKHFPATIDSFQDAVK-CL 1327
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.325 0.141 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,097,813
Number of Sequences: 164201
Number of extensions: 930338
Number of successful extensions: 6910
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6617
Number of HSP's gapped (non-prelim): 183
length of query: 171
length of database: 59,974,054
effective HSP length: 102
effective length of query: 69
effective length of database: 43,225,552
effective search space: 2982563088
effective search space used: 2982563088
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0079c.14