BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0079b.3
(382 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
FTSK_SHIFL (Q83S00) DNA translocase ftsK 39 0.022
FTSK_ECO57 (Q8X5H9) DNA translocase ftsK 39 0.022
YXCE_BACSU (P46335) Hypothetical protein yxcE 38 0.049
FTSK_ECOL6 (Q8FJC7) DNA translocase ftsK 37 0.064
RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subun... 37 0.084
EYA1_MOUSE (P97767) Eyes absent homolog 1 (EC 3.1.3.48) 37 0.084
IF2P_SCHPO (Q10251) Eukaryotic translation initiation factor 5B ... 36 0.14
EYA1_HUMAN (Q99502) Eyes absent homolog 1 (EC 3.1.3.48) 36 0.14
BLI1_CAEEL (Q09457) Cuticle collagen bli-1 36 0.14
FTSK_ECOLI (P46889) DNA translocase ftsK 36 0.19
PCAP_HUMAN (Q96RN5) Positive cofactor 2 glutamine/Q-rich-associa... 35 0.24
FTSK_SALTI (Q8Z814) DNA translocase ftsK 35 0.24
YF06_MYCPN (P75280) Hypothetical lipoprotein MPN506 precursor (P... 35 0.32
GDBX_WHEAT (P21292) Gamma-gliadin precursor 35 0.32
GLTC_WHEAT (P16315) Glutenin, low molecular weight subunit PTDUC... 34 0.54
GDB2_WHEAT (P08453) Gamma-gliadin precursor 34 0.54
GDB0_WHEAT (P08079) Gamma-gliadin precursor (Fragment) 34 0.54
EXTN_DAUCA (P06599) Extensin precursor 34 0.54
DYHC_DICDI (P34036) Dynein heavy chain, cytosolic (DYHC) 34 0.54
ODO2_SCHPO (O94681) Probable dihydrolipoyllysine-residue succiny... 33 0.93
>FTSK_SHIFL (Q83S00) DNA translocase ftsK
Length = 1342
Score = 38.9 bits (89), Expect = 0.022
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 4 YPPQNQPHHPGGNFQNSQYQMFP---YTSQNQPLHPDENFTNPQYPMYP-PQYQFQSQAP 59
Y QP P +Q Q Q+ P Y QP+ P + + PQ P+ P PQYQ Q Q P
Sbjct: 752 YQQPQQPVAPQQQYQQPQQQVAPQPQYQQPQQPVAPQQQYQQPQQPVAPQPQYQ-QPQQP 810
Query: 60 PTGSTGSKVSDTQCEATPDDT 80
+ P DT
Sbjct: 811 VAPQPQYQQPQQPVAPQPQDT 831
Score = 33.1 bits (74), Expect = 1.2
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 1 MSPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYP-PQYQFQSQAP 59
++P P QP P Q Y QP+ P + PQ P+ P PQYQ Q Q P
Sbjct: 772 VAPQPQYQQPQQPVAPQQQ-------YQQPQQPVAPQPQYQQPQQPVAPQPQYQ-QPQQP 823
>FTSK_ECO57 (Q8X5H9) DNA translocase ftsK
Length = 1342
Score = 38.9 bits (89), Expect = 0.022
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 4 YPPQNQPHHPGGNFQNSQYQMFP---YTSQNQPLHPDENFTNPQYPMYP-PQYQFQSQAP 59
Y QP P +Q Q Q+ P Y QP+ P + + PQ P+ P PQYQ Q Q P
Sbjct: 752 YQQPQQPVAPQPQYQQPQQQVAPQPQYQQPQQPVAPQQQYQQPQQPVAPQPQYQ-QPQQP 810
Query: 60 PTGSTGSKVSDTQCEATPDDT 80
+ P DT
Sbjct: 811 VAPQPQYQQPQQPVAPQPQDT 831
Score = 33.1 bits (74), Expect = 1.2
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 1 MSPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYP-PQYQFQSQAP 59
++P P QP P Q Y QP+ P + PQ P+ P PQYQ Q Q P
Sbjct: 772 VAPQPQYQQPQQPVAPQQQ-------YQQPQQPVAPQPQYQQPQQPVAPQPQYQ-QPQQP 823
>YXCE_BACSU (P46335) Hypothetical protein yxcE
Length = 216
Score = 37.7 bits (86), Expect = 0.049
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 230 TNSRGQKKSGAGADGTSTDPSASIDCDEYEATPPTTRPKGKKAEKRKAKTTDTASSTLSF 289
T S + SG + S+ S+S Y+++P ++ G + +K+KT+D +SS++S
Sbjct: 23 TISHAKSFSGRSSSSYSSRSSSSSYSGSYKSSPKSSYSSGSSSSSKKSKTSDDSSSSISL 82
Query: 290 APHPDVLAMGKAKMEMMANF 309
P A + + F
Sbjct: 83 KKKPSEKASSSSSKKSSGTF 102
>FTSK_ECOL6 (Q8FJC7) DNA translocase ftsK
Length = 1347
Score = 37.4 bits (85), Expect = 0.064
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 1 MSPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPM-YPPQYQFQSQAP 59
++P P QP P QYQ Y QP+ P + + PQ P+ PQYQ Q Q P
Sbjct: 772 VAPQPQYQQPQQPVA--PQPQYQQPQYQQPQQPVAPQQQYQQPQQPVTQQPQYQ-QPQQP 828
Score = 33.5 bits (75), Expect = 0.93
Identities = 24/88 (27%), Positives = 31/88 (34%), Gaps = 8/88 (9%)
Query: 1 MSPYPPQNQPHHPGGNFQNSQYQMFP---YTSQNQPLHPDENFTNPQY-----PMYPPQY 52
+ P QP P +Q Q + P Y QP+ P + PQY P+ P Q
Sbjct: 749 VEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQYQQPQQPVAPQQQ 808
Query: 53 QFQSQAPPTGSTGSKVSDTQCEATPDDT 80
Q Q P T + P DT
Sbjct: 809 YQQPQQPVTQQPQYQQPQQPVVPQPQDT 836
>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6)
Length = 1887
Score = 37.0 bits (84), Expect = 0.084
Identities = 23/68 (33%), Positives = 29/68 (41%)
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPT 61
SP P P P + Q P + Q P P + T+P Y PQ+ +Q PT
Sbjct: 1755 SPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT 1814
Query: 62 GSTGSKVS 69
GST S S
Sbjct: 1815 GSTYSATS 1822
Score = 31.2 bits (69), Expect = 4.6
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPT 61
SP P P P + + Y P + P+ P + T+P Y P Q+ +P
Sbjct: 1693 SPSSPSYSPTSPCYSPTSPSYS--PTSPNYTPVTPSYSPTSPNYSASP---QYSPASPAY 1747
Query: 62 GSTGSKVSDTQCEATPDDTQHEG 84
TG K S T +P ++G
Sbjct: 1748 SQTGVKYSPTSPTYSPPSPSYDG 1770
>EYA1_MOUSE (P97767) Eyes absent homolog 1 (EC 3.1.3.48)
Length = 591
Score = 37.0 bits (84), Expect = 0.084
Identities = 32/101 (31%), Positives = 43/101 (41%), Gaps = 7/101 (6%)
Query: 7 QNQPHHPGGNFQNSQYQMFPYTSQNQPLH-PDENFTNPQYPMYPPQYQFQSQAPPTGSTG 65
Q+ P +PG F QY + Y S P H + T+P P YQ Q PP+G T
Sbjct: 212 QDYPSYPG--FGQGQYAQY-YNSSPYPAHYMTSSNTSPTTPSTNATYQLQE--PPSGVTS 266
Query: 66 SKVSDTQCEATPDDTQHEGLDDIDLED-EDQSSGKKRTRWR 105
V+D E + + + + D E S GK R R R
Sbjct: 267 QAVTDPTAEYSTIHSPSTPIKETDSERLRRGSDGKSRGRGR 307
>IF2P_SCHPO (Q10251) Eukaryotic translation initiation factor 5B
(eIF-5B) (Translation initiation factor IF-2)
Length = 1079
Score = 36.2 bits (82), Expect = 0.14
Identities = 33/133 (24%), Positives = 55/133 (40%), Gaps = 17/133 (12%)
Query: 218 KDEPKWKGQSMKTNSRGQKKSGAGADGTSTDPSASIDCDEYEATPPTTRPKGKKAEKRKA 277
K+ K + + ++ + KK G+ + T S + D + KGK+A K
Sbjct: 183 KEREKKEREKLRKKQQQAKKKGSTGEDTLASSEVSSEVDISTPAENDSSAKGKQAAGSKR 242
Query: 278 KTTDTASSTLSFAPHPDVLAMGKAKMEMMANFRE---IRNRELDLQQADQQLKQSELQLR 334
K P+V A+ K E A E IR E + + +++L + E + R
Sbjct: 243 K-------------GPNVTALQKMLEEKRAREEEEQRIREEEARIAEEEKRLAEVE-EAR 288
Query: 335 QEELKFKKAENFR 347
+EE + KK E R
Sbjct: 289 KEEARLKKKEKER 301
>EYA1_HUMAN (Q99502) Eyes absent homolog 1 (EC 3.1.3.48)
Length = 592
Score = 36.2 bits (82), Expect = 0.14
Identities = 34/104 (32%), Positives = 44/104 (41%), Gaps = 13/104 (12%)
Query: 7 QNQPHHPGGNFQNSQYQMFPYTSQNQPLH-PDENFTNPQYPMYPPQYQFQSQAPPTGSTG 65
Q+ P +P +F QY + Y S P H + T+P P YQ Q PP+G T
Sbjct: 213 QDYPSYP--SFGQGQYAQY-YNSSPYPAHYMTSSNTSPTTPSTNATYQLQE--PPSGITS 267
Query: 66 SKVSDTQCEATPDDTQHEGLDDIDLEDEDQ----SSGKKRTRWR 105
V+D E + T H I D D+ S GK R R R
Sbjct: 268 QAVTDPTAEYS---TIHSPSTPIKDSDSDRLRRGSDGKSRGRGR 308
>BLI1_CAEEL (Q09457) Cuticle collagen bli-1
Length = 963
Score = 36.2 bits (82), Expect = 0.14
Identities = 30/105 (28%), Positives = 36/105 (33%), Gaps = 11/105 (10%)
Query: 3 PYPPQNQPH----HPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQA 58
PYPPQ P H N + S Y P P TNP+ P PPQ + Q
Sbjct: 188 PYPPQQPPSTSAPHSSPNNRTSLYNPQPPPKTGYP-------TNPRVPYNPPQPNYTRQP 240
Query: 59 PPTGSTGSKVSDTQCEATPDDTQHEGLDDIDLEDEDQSSGKKRTR 103
+ T+ TP Q G D D + S TR
Sbjct: 241 TYPEDNRAPYKPTRSPNTPPPRQPSGGYDSDGQTPPSSPRIYNTR 285
>FTSK_ECOLI (P46889) DNA translocase ftsK
Length = 1329
Score = 35.8 bits (81), Expect = 0.19
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 4 YPPQNQPHHPGGNFQNSQYQMFP---YTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAP 59
Y QP P +Q Q + P Y QP+ P + + PQ P+ P Q Q Q P
Sbjct: 752 YQQPQQPVPPQPQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAPQQQYQQPQQP 810
Score = 31.2 bits (69), Expect = 4.6
Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 1 MSPYPPQNQPHHPGGNFQNSQYQMFPYTSQN---QPLHPDENFTNPQYPMYPPQYQFQSQ 57
+ P QP P +Q Q + P QP+ P + PQ P+ P Q Q Q
Sbjct: 736 VEPVQQPQQPVAPQQQYQQPQQPVPPQPQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQ 795
Query: 58 APPTGSTGSKVSDTQCEATPDDT 80
P + P DT
Sbjct: 796 QPVAPQQQYQQPQQPVAPQPQDT 818
>PCAP_HUMAN (Q96RN5) Positive cofactor 2 glutamine/Q-rich-associated
protein (PC2 glutamine/Q-rich-associated protein)
(TPA-inducible gene-1) (TIG-1) (Activator-recruited
cofactor 105 kDa component) (ARC105) (CTG repeat protein
7a)
Length = 788
Score = 35.4 bits (80), Expect = 0.24
Identities = 24/69 (34%), Positives = 26/69 (36%), Gaps = 10/69 (14%)
Query: 5 PPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQ-SQAPPTGS 63
PP QP P Q Q +T +QP P P PP Q Q SQ PP
Sbjct: 273 PPMQQPQPPPSQALPQQLQQMHHTQHHQP---------PPQPQQPPVAQNQPSQLPPQSQ 323
Query: 64 TGSKVSDTQ 72
T VS Q
Sbjct: 324 TQPLVSQAQ 332
>FTSK_SALTI (Q8Z814) DNA translocase ftsK
Length = 1343
Score = 35.4 bits (80), Expect = 0.24
Identities = 22/63 (34%), Positives = 29/63 (45%), Gaps = 5/63 (7%)
Query: 1 MSPYPPQNQPHHPGGNFQNSQYQMF---PYTSQNQPLHPDENFTNPQYPMYP-PQYQFQS 56
++P P QP P +Q Q + Y QP+ P + PQ P+ P PQYQ Q
Sbjct: 726 VAPQPQYQQPVAPQPQYQQPQQPVASQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQ-QP 784
Query: 57 QAP 59
Q P
Sbjct: 785 QQP 787
Score = 32.7 bits (73), Expect = 1.6
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 1 MSPYPPQNQPHHPGGN---FQNSQYQMFPYTSQN---QPLHPDENFTNPQYPMYP-PQYQ 53
++P P QP P + +Q Q + P QP+ P + PQ P+ P PQYQ
Sbjct: 736 VAPQPQYQQPQQPVASQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQ 795
Query: 54 FQSQAP 59
Q Q P
Sbjct: 796 -QPQQP 800
Score = 32.3 bits (72), Expect = 2.1
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 1 MSPYPPQNQPHHPGG---NFQNSQYQMFPYTSQN---QPLHPDENFTNPQYPMYP-PQYQ 53
++P P QP P +Q Q + P QP+ P + PQ P+ P PQYQ
Sbjct: 762 VAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQ 821
Query: 54 FQSQAP 59
Q Q P
Sbjct: 822 -QPQQP 826
Score = 32.0 bits (71), Expect = 2.7
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 4 YPPQNQPHHPGGNFQNSQYQMFPYTSQN---QPLHPDENFTNPQYPMYP-PQYQFQSQAP 59
Y QP P +Q Q + P QP+ P + PQ P+ P PQYQ Q Q P
Sbjct: 755 YQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQ-QPQQP 813
Score = 30.4 bits (67), Expect = 7.8
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 6 PQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYP-PQYQFQSQAP 59
P QP P +Q Y QP+ + PQ P+ P PQYQ Q Q P
Sbjct: 721 PVQQPVAPQPQYQQPVAPQPQYQQPQQPVASQPQYQQPQQPVAPQPQYQ-QPQQP 774
>YF06_MYCPN (P75280) Hypothetical lipoprotein MPN506 precursor
(P02_orf793)
Length = 793
Score = 35.0 bits (79), Expect = 0.32
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 12/126 (9%)
Query: 226 QSMKTNSRGQKKSGAGADGTSTDPSASIDCDEYEATPPTTRPKGKKAEKRKAKTTDTASS 285
Q M ++S G+ SG T T+ S+ ++ + + GK EK K K D S+
Sbjct: 183 QKMTSSSEGKNSSGTLTVATDTETSSL-----WKKIEDSAKANGKSDEKGKGKKKDNKSA 237
Query: 286 TLSFAPHPDVLAMGKAKMEMMANFREIRNRELDLQQADQQLKQSELQLRQEELKFKKAEN 345
T S L K E + ++ +N + ++++ + ++ + L+ E K EN
Sbjct: 238 TFS-------LVQLKQTQEKTDDSQDTKNSDDQVKKSWGEYQEVDGVLKNFEFKASIFEN 290
Query: 346 FRAYMD 351
+ +D
Sbjct: 291 WHDLLD 296
>GDBX_WHEAT (P21292) Gamma-gliadin precursor
Length = 302
Score = 35.0 bits (79), Expect = 0.32
Identities = 20/67 (29%), Positives = 23/67 (33%), Gaps = 10/67 (14%)
Query: 3 PYPPQNQPHHPGGNFQNSQYQMFPYTSQNQ----------PLHPDENFTNPQYPMYPPQY 52
P P Q PH P F +Q P+ Q P P + F PQ P P
Sbjct: 68 PQPQQTYPHQPQQQFPQTQQPQQPFPQPQQTFPQQPQLPFPQQPQQPFPQPQQPQQPFPQ 127
Query: 53 QFQSQAP 59
Q Q P
Sbjct: 128 SQQPQQP 134
Score = 33.5 bits (75), Expect = 0.93
Identities = 21/61 (34%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 3 PYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPTG 62
P P Q P P F Q FP QP P PQ P PQ QF P
Sbjct: 93 PQPQQTFPQQPQLPFPQQPQQPFP--QPQQPQQPFPQSQQPQQPFPQPQQQFPQPQQPQQ 150
Query: 63 S 63
S
Sbjct: 151 S 151
Score = 32.7 bits (73), Expect = 1.6
Identities = 18/55 (32%), Positives = 20/55 (35%), Gaps = 3/55 (5%)
Query: 6 PQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYP---PQYQFQSQ 57
PQ P F + Q FP Q P P + F Q P P PQ F Q
Sbjct: 48 PQRTIPQPHQTFHHQPQQTFPQPQQTYPHQPQQQFPQTQQPQQPFPQPQQTFPQQ 102
>GLTC_WHEAT (P16315) Glutenin, low molecular weight subunit PTDUCD1
precursor
Length = 295
Score = 34.3 bits (77), Expect = 0.54
Identities = 18/57 (31%), Positives = 27/57 (46%), Gaps = 4/57 (7%)
Query: 3 PYPPQNQP----HHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQ 55
P+P Q QP P Q P++ Q QP+ P ++ + Q + PPQ Q+Q
Sbjct: 50 PFPQQQQPPFSQQQPSFLQQQPILPQLPFSQQQQPVLPQQSPFSQQQLVLPPQQQYQ 106
>GDB2_WHEAT (P08453) Gamma-gliadin precursor
Length = 327
Score = 34.3 bits (77), Expect = 0.54
Identities = 24/61 (39%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 3 PYPPQNQPHHPGGNFQNSQYQMFPYTSQNQ---PLHPDENFTNPQYPMYP-PQYQFQSQA 58
P+P QP P F Q FP T Q Q P P + F Q P P PQ Q Q Q
Sbjct: 91 PFPQTQQPQQP---FPQQPQQPFPQTQQPQQPFPQQPQQPFPQTQQPQQPFPQLQ-QPQQ 146
Query: 59 P 59
P
Sbjct: 147 P 147
Score = 33.9 bits (76), Expect = 0.71
Identities = 21/61 (34%), Positives = 22/61 (35%), Gaps = 5/61 (8%)
Query: 3 PYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPTG 62
P+P QP P F Q FP T Q P P PQ P PQ Q P
Sbjct: 109 PFPQTQQPQQP---FPQQPQQPFPQTQQ--PQQPFPQLQQPQQPFPQPQQQLPQPQQPQQ 163
Query: 63 S 63
S
Sbjct: 164 S 164
Score = 32.3 bits (72), Expect = 2.1
Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 3 PYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPL--HPDENFTNPQYPMYPPQYQFQSQAPP 60
P P Q PH P Q P+ QP P + F Q P P Q Q P
Sbjct: 53 PQPQQTFPHQPQQQVPQPQQPQQPFLQPQQPFPQQPQQPFPQTQQPQQPFPQQPQQPFPQ 112
Query: 61 T 61
T
Sbjct: 113 T 113
Score = 31.2 bits (69), Expect = 4.6
Identities = 22/62 (35%), Positives = 23/62 (36%), Gaps = 6/62 (9%)
Query: 3 PYPPQNQPHHPGGNFQNSQYQMFPYTSQNQ---PLHPDENFTNPQYPMYPPQYQFQSQAP 59
P P QP P F Q FP T Q Q P P + F Q P P Q Q P
Sbjct: 73 PQQPFLQPQQP---FPQQPQQPFPQTQQPQQPFPQQPQQPFPQTQQPQQPFPQQPQQPFP 129
Query: 60 PT 61
T
Sbjct: 130 QT 131
>GDB0_WHEAT (P08079) Gamma-gliadin precursor (Fragment)
Length = 251
Score = 34.3 bits (77), Expect = 0.54
Identities = 20/55 (36%), Positives = 21/55 (37%), Gaps = 6/55 (10%)
Query: 6 PQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYP---MYPPQYQFQSQ 57
P QPH P F Q FP Q P P + F PQ P PQ F Q
Sbjct: 36 PVPQPHQP---FSQQPQQTFPQPQQTFPHQPQQQFPQPQQPQQQFLQPQQPFPQQ 87
Score = 33.1 bits (74), Expect = 1.2
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 5 PPQNQPHHPGGNFQNSQYQMFPYTSQNQPL-----HPDENFTNP--QYPM-YPPQYQFQS 56
P Q P P + Q FP T Q Q L P + F+ P Q+P PQ F
Sbjct: 80 PQQPFPQQPQQPYPQQPQQPFPQTQQPQQLFPQSQQPQQQFSQPQQQFPQPQQPQQSFPQ 139
Query: 57 QAPP 60
Q PP
Sbjct: 140 QQPP 143
Score = 30.8 bits (68), Expect = 6.0
Identities = 21/64 (32%), Positives = 22/64 (33%), Gaps = 7/64 (10%)
Query: 3 PYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYP------PQYQF-Q 55
P P Q PH P F Q + QP PQ P P PQ F Q
Sbjct: 53 PQPQQTFPHQPQQQFPQPQQPQQQFLQPQQPFPQQPQQPYPQQPQQPFPQTQQPQQLFPQ 112
Query: 56 SQAP 59
SQ P
Sbjct: 113 SQQP 116
>EXTN_DAUCA (P06599) Extensin precursor
Length = 306
Score = 34.3 bits (77), Expect = 0.54
Identities = 23/70 (32%), Positives = 32/70 (44%), Gaps = 12/70 (17%)
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLH------PDENFTNPQYPMY--PPQYQ 53
SP PP++ P P ++S + Y S P H P + +P PM+ PP Y
Sbjct: 38 SPPPPEHSPPPP----EHSPPPPYHYESPPPPKHSPPPPTPVYKYKSPPPPMHSPPPPYH 93
Query: 54 FQSQAPPTGS 63
F+S PP S
Sbjct: 94 FESPPPPKHS 103
>DYHC_DICDI (P34036) Dynein heavy chain, cytosolic (DYHC)
Length = 4725
Score = 34.3 bits (77), Expect = 0.54
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 313 RNRELDL--QQADQQLKQSELQLRQEELKFKKAENFRAYMDILNK 355
+NRELD+ +QA+Q+LKQ + E+K K A + +D+ NK
Sbjct: 3304 KNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNK 3348
>ODO2_SCHPO (O94681) Probable dihydrolipoyllysine-residue
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) (E2) (Probable dihydrolipoamide
succinyltransferase component of 2-oxoglutarate dehydrog
Length = 452
Score = 33.5 bits (75), Expect = 0.93
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 241 GADGTSTDPSASI---DCDEYEATPPTTRP-KGKKAEKRKAKTTDTASSTLSFAPHPDVL 296
GA+ + PS++ D E E + P +P K + ++ K K T+TA + SF+ + D +
Sbjct: 165 GAEQKESAPSSTKPAPDAKEPEFSSPKPKPAKSEPVKQSKPKATETARPS-SFSRNEDRV 223
Query: 297 AMGKAKMEMMANFREIRNRELDLQQADQQLKQSELQLRQE 336
M + ++ + +E +NR L ++ + + LR++
Sbjct: 224 KMNRMRLRIAERLKESQNRAASLTTFNECDMSAVVALRKK 263
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.313 0.129 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,194,499
Number of Sequences: 164201
Number of extensions: 2274303
Number of successful extensions: 6753
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 6516
Number of HSP's gapped (non-prelim): 245
length of query: 382
length of database: 59,974,054
effective HSP length: 112
effective length of query: 270
effective length of database: 41,583,542
effective search space: 11227556340
effective search space used: 11227556340
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0079b.3