BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0076a.6
(123 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RGP1_HUMAN (P46060) Ran GTPase-activating protein 1 43 1e-04
NFM_BOVIN (O77788) Neurofilament triplet M protein (160 kDa neur... 42 2e-04
GA2B_HUMAN (P14314) Glucosidase II beta subunit precursor (Prote... 42 2e-04
YSE2_CAEEL (Q09936) Hypothetical protein C53C9.2 in chromosome X 41 4e-04
NKX1_HUMAN (O60721) Sodium/potassium/calcium exchanger 1 precurs... 41 4e-04
ABP1_SACEX (P38479) Actin binding protein 41 5e-04
ABF1_HUMAN (Q15911) Alpha-fetoprotein enhancer binding protein (... 40 7e-04
NFM_RABIT (P54938) Neurofilament triplet M protein (160 kDa neur... 40 0.001
NFM_HUMAN (P07197) Neurofilament triplet M protein (160 kDa neur... 40 0.001
MYT1_HUMAN (Q01538) Myelin transcription factor 1 (MYT1) (MYTI) ... 40 0.001
TOP1_YEAST (P04786) DNA topoisomerase I (EC 5.99.1.2) 40 0.001
ECM2_HUMAN (O94769) Extracellular matrix protein 2 precursor (Ma... 40 0.001
TRX2_MOUSE (O08550) Trithorax homolog 2 (WW domain binding prote... 39 0.002
RGP1_MOUSE (P46061) Ran GTPase-activating protein 1 39 0.002
GARP_PLAFF (P13816) Glutamic acid-rich protein precursor 39 0.002
ACIN_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in ... 39 0.002
ABF1_MOUSE (Q61329) Alpha-fetoprotein enhancer binding protein (... 39 0.002
TCOF_MOUSE (O08784) Treacle protein (Treacher Collins syndrome p... 39 0.002
RYR1_RABIT (P11716) Ryanodine receptor 1 (Skeletal muscle-type r... 39 0.002
I28R_MOUSE (Q8CGK5) Interleukin-28 receptor alpha chain precurso... 39 0.002
>RGP1_HUMAN (P46060) Ran GTPase-activating protein 1
Length = 587
Score = 43.1 bits (100), Expect = 1e-04
Identities = 23/54 (42%), Positives = 31/54 (56%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKCPPPPRKPKPSL 96
E+ + EEEE+EEEEE EEEEEE +GE++ P+ P +P P L
Sbjct: 373 EEEAEEEEEEDEEEEEEEEEEEEEEPQQRGQGEKSATPSRKILDPNTGEPAPVL 426
Score = 28.9 bits (63), Expect = 2.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKCPPPP 89
E+ E+ EEEEEEE ++ E+ S PA + PPP
Sbjct: 385 EEEEEEEEEEEEEPQQRGQGEKSATPSRKILDPNTGEPAPVLSSPPP 431
>NFM_BOVIN (O77788) Neurofilament triplet M protein (160 kDa
neurofilament protein) (Neurofilament medium
polypeptide) (NF-M) (Fragment)
Length = 810
Score = 42.0 bits (97), Expect = 2e-04
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 6 KSQQVEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETFMEEEE 65
K ++ EE+ + E+ + V+ P+ T P K E+ E+EEEE +EE EEEE
Sbjct: 374 KEEEAEEKEEKEEAEEEVVAA-----KKSPVKATAPELKEEEGEKEEEEGQEE---EEEE 425
Query: 66 EECSTTPKGEE 76
EE + + + EE
Sbjct: 426 EEAAKSDQAEE 436
Score = 32.7 bits (73), Expect = 0.15
Identities = 17/63 (26%), Positives = 34/63 (52%)
Query: 5 EKSQQVEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETFMEEE 64
EK+++ EE+ + +K + + P+K PV+ + + E +EEE+ +E E+E
Sbjct: 615 EKAEKKEEKPKDVPEKKKAESPVKAESPVKEEVPAKPVKVSPEKEAKEEEKPQEKEKEKE 674
Query: 65 EEE 67
+ E
Sbjct: 675 KVE 677
Score = 27.7 bits (60), Expect = 4.7
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 40 TPVEKTEQHEEEEEEE-EEETFMEEEEEECSTTPKGEEAR--------IPATLKCPPPPR 90
+PVE+ + E E+ E++ +EEE++E +PK E+A +P K P +
Sbjct: 579 SPVEEVKPKAEAGAEKGEQKEKVEEEKKEAKESPKEEKAEKKEEKPKDVPEKKKAESPVK 638
Query: 91 KPKP 94
P
Sbjct: 639 AESP 642
Score = 27.3 bits (59), Expect = 6.2
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 10 VEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETFMEEEEEECS 69
+EE VE E + + L I V E+ +EEE EE+EE EE EEE
Sbjct: 342 IEETKVEDEKSE-------MEEALTAITEELAVSVKEEVKEEEAEEKEE--KEEAEEEVV 392
Query: 70 TTPK 73
K
Sbjct: 393 AAKK 396
>GA2B_HUMAN (P14314) Glucosidase II beta subunit precursor (Protein
kinase C substrate, 60.1 kDa protein, heavy chain)
(PKCSH) (80K-H protein)
Length = 527
Score = 42.0 bits (97), Expect = 2e-04
Identities = 27/52 (51%), Positives = 29/52 (54%), Gaps = 8/52 (15%)
Query: 41 PVEKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKCPPPPRKP 92
PV + EEEEEEEEEE EEEEEE S EEA P + PP P P
Sbjct: 306 PVPSSPTEEEEEEEEEEEEAEEEEEEEDS-----EEAPPPLS---PPQPASP 349
Score = 30.8 bits (68), Expect = 0.56
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 31 RPLKPIYTTTPVEKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKCPPP 88
+P P T E+ E+ EEE EEEEE EE+ EE + PA PP
Sbjct: 304 QPPVPSSPTEEEEEEEEEEEEAEEEEE----EEDSEEAPPPLSPPQPASPAEEDKMPP 357
>YSE2_CAEEL (Q09936) Hypothetical protein C53C9.2 in chromosome X
Length = 397
Score = 41.2 bits (95), Expect = 4e-04
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 41 PVEKTEQHEEEEEEEEEETFMEEEEEE 67
P K E+ EEEEEEEEEE +EEEEEE
Sbjct: 363 PAAKEEEEEEEEEEEEEEEELEEEEEE 389
Score = 37.7 bits (86), Expect = 0.005
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEE 67
E+ E+ EEEEEEEEEE EEEEEE
Sbjct: 367 EEEEEEEEEEEEEEEELEEEEEEEE 391
Score = 37.4 bits (85), Expect = 0.006
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEE 67
++ E+ EEEEEEEEEE EEEEEE
Sbjct: 366 KEEEEEEEEEEEEEEEELEEEEEEE 390
Score = 35.0 bits (79), Expect = 0.030
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 17/84 (20%)
Query: 3 FSEKSQQVEERGVESESRKWVITGIALR--RPLKPIYTTTPVEKTEQHEEE--------E 52
F ++ EER SR+ I +++ P++P P E+ E+ EEE E
Sbjct: 315 FGHYKKKFEER---ESSRQSEIDSQSVKASEPVEP----EPEEEEEEEEEEKIEEPAAKE 367
Query: 53 EEEEEETFMEEEEEECSTTPKGEE 76
EEEEEE EEEEEE + EE
Sbjct: 368 EEEEEEEEEEEEEEELEEEEEEEE 391
Score = 34.7 bits (78), Expect = 0.039
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEE 67
E+ E+ EEEEEE EEE EEEEEE
Sbjct: 371 EEEEEEEEEEEELEEEEEEEEEEEE 395
Score = 34.7 bits (78), Expect = 0.039
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEE 67
E+ E+ EEEEEEEE E EEEEEE
Sbjct: 369 EEEEEEEEEEEEEELEEEEEEEEEE 393
Score = 34.7 bits (78), Expect = 0.039
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEE 67
E+ E+ EEEEEEE EE EEEEEE
Sbjct: 370 EEEEEEEEEEEEELEEEEEEEEEEE 394
Score = 34.7 bits (78), Expect = 0.039
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEE 67
E+ E+ EEEEEEEEE EEEEEE
Sbjct: 368 EEEEEEEEEEEEEEELEEEEEEEEE 392
Score = 33.5 bits (75), Expect = 0.086
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEE 67
E+ E+ EEEE EEEEE EEEE+E
Sbjct: 373 EEEEEEEEEELEEEEEEEEEEEEDE 397
Score = 33.5 bits (75), Expect = 0.086
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEE 67
E+ E+ EEEEE EEEE EEEEE+
Sbjct: 372 EEEEEEEEEEELEEEEEEEEEEEED 396
Score = 32.7 bits (73), Expect = 0.15
Identities = 17/37 (45%), Positives = 22/37 (58%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARI 79
E E+ EEEEEE+ EE +EEEEE + EE +
Sbjct: 347 EPEEEEEEEEEEKIEEPAAKEEEEEEEEEEEEEEEEL 383
Score = 32.3 bits (72), Expect = 0.19
Identities = 18/34 (52%), Positives = 20/34 (57%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E + EEEEEEEEEE EE EEE + EE
Sbjct: 362 EPAAKEEEEEEEEEEEEEEEELEEEEEEEEEEEE 395
>NKX1_HUMAN (O60721) Sodium/potassium/calcium exchanger 1 precursor
(Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod
Na-Ca+K exchanger)
Length = 1099
Score = 41.2 bits (95), Expect = 4e-04
Identities = 24/49 (48%), Positives = 29/49 (58%), Gaps = 2/49 (4%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKCPPPPRK 91
E+ E+ EE+EEEEEEE EEEEEE KG E P +L P +K
Sbjct: 861 EEEEEEEEQEEEEEEEEQEEEEEEEEEEEEKGNEE--PLSLDWPETRQK 907
Score = 37.4 bits (85), Expect = 0.006
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEE 67
E+ E+ EEE+EEEEEE EEEEEE
Sbjct: 860 EEEEEEEEEQEEEEEEEEQEEEEEE 884
Score = 35.4 bits (80), Expect = 0.023
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 45 TEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKCPPPPRKPKPSL 96
+E+ EEEEEE+EEE EE+EEE + EE L P + K ++
Sbjct: 859 SEEEEEEEEEQEEEEEEEEQEEEEEEEEEEEEKGNEEPLSLDWPETRQKQAI 910
Score = 28.1 bits (61), Expect = 3.6
Identities = 18/70 (25%), Positives = 33/70 (46%), Gaps = 1/70 (1%)
Query: 36 IYTTTPVEKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE-ARIPATLKCPPPPRKPKP 94
+++ P+ + +E+EEE + + + + + P+ EE A++PA P P K
Sbjct: 676 LHSLDPLREVRLAKEKEEESLNQGARAQPQAKAESKPEEEEPAKLPAVTVTPAPVPDIKG 735
Query: 95 SLKCNFRGGE 104
K N G E
Sbjct: 736 DQKENPGGQE 745
>ABP1_SACEX (P38479) Actin binding protein
Length = 617
Score = 40.8 bits (94), Expect = 5e-04
Identities = 31/81 (38%), Positives = 38/81 (46%), Gaps = 24/81 (29%)
Query: 28 ALRRPLKPIYTTT-PVEKTEQHEEEEEEEEEET------------------FMEEEEEEC 68
A ++PL P T PVE+ E+ EEEEEEEEEE EEEEEE
Sbjct: 470 APQQPLPPRNTEPEPVEEGEEEEEEEEEEEEEAPAPSLPSRNAAPEPEPEQPQEEEEEEE 529
Query: 69 STTPKGEEARIPATLKCPPPP 89
+ P +P+ PPPP
Sbjct: 530 APAPS-----LPSRGSVPPPP 545
>ABF1_HUMAN (Q15911) Alpha-fetoprotein enhancer binding protein (AT
motif-binding factor) (AT-binding transcription factor
1)
Length = 3703
Score = 40.4 bits (93), Expect = 7e-04
Identities = 22/63 (34%), Positives = 32/63 (49%)
Query: 6 KSQQVEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETFMEEEE 65
KS + ++ G ++ V G ++P E+ E+ EEEEEEEEE EEE+
Sbjct: 429 KSSEGKDSGAAEGEKQEVGDGDCFSEKVEPAEEEAEEEEEEEEAEEEEEEEEEEEEEEED 488
Query: 66 EEC 68
E C
Sbjct: 489 EGC 491
Score = 36.6 bits (83), Expect = 0.010
Identities = 20/34 (58%), Positives = 21/34 (60%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
EK E EEE EEEEEE EEEEEE + EE
Sbjct: 454 EKVEPAEEEAEEEEEEEEAEEEEEEEEEEEEEEE 487
Score = 32.0 bits (71), Expect = 0.25
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 34 KPIYTTTPVEKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKCP----PPP 89
KP P + Q +E++ + + E +E+ E+ + TP + ++P + P PPP
Sbjct: 2429 KPKLAEAPSAQPNQTQEKQGQPKPELQQQEQPEQKTNTP---QQKLPQLVSLPSLPQPPP 2485
Query: 90 RKPKP 94
+ P P
Sbjct: 2486 QAPPP 2490
Score = 27.3 bits (59), Expect = 6.2
Identities = 21/73 (28%), Positives = 28/73 (37%), Gaps = 14/73 (19%)
Query: 3 FSEKSQQVEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETFME 62
FSEK + EE E E + E+ E+ EEEE+E + F
Sbjct: 452 FSEKVEPAEEEAEEEEEEEEA--------------EEEEEEEEEEEEEEEDEGCKGLFPS 497
Query: 63 EEEEECSTTPKGE 75
E +EE P E
Sbjct: 498 ELDEELEDRPHEE 510
>NFM_RABIT (P54938) Neurofilament triplet M protein (160 kDa
neurofilament protein) (Neurofilament medium
polypeptide) (NF-M) (Fragment)
Length = 644
Score = 40.0 bits (92), Expect = 0.001
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 5 EKSQQVEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETFMEEE 64
E+ ++ E G E E A + P+K TTP K E+ E+EEE +EEE EEE
Sbjct: 272 EEEKEEEAEGKEEEQEAEEEVAAAKKSPVK---ATTPEIKEEEGEKEEEGQEEE---EEE 325
Query: 65 EEECSTTPKGEE 76
E+E + + EE
Sbjct: 326 EDEGVKSDQAEE 337
Score = 31.6 bits (70), Expect = 0.33
Identities = 24/102 (23%), Positives = 50/102 (48%), Gaps = 9/102 (8%)
Query: 4 SEKSQQVEERGVESESRKWVITGIALRRPLK---PIYTTTPVEKTEQHEEE-----EEEE 55
+++ ++ EE+ E +++ +T + +P K P+ +PVE+ + E E++E
Sbjct: 368 AKEEKKTEEKSEEVAAKEEPVTEAKVGKPEKAKSPV-PKSPVEEVKPKAEATAGKGEQKE 426
Query: 56 EEETFMEEEEEECSTTPKGEEARIPATLKCPPPPRKPKPSLK 97
EEE EE+++ +PK E+ P +K + +K
Sbjct: 427 EEEKVEEEKKKAAKESPKEEKVEKKEEKPKDVPKKKAESPVK 468
Score = 28.9 bits (63), Expect = 2.1
Identities = 19/67 (28%), Positives = 31/67 (45%)
Query: 10 VEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETFMEEEEEECS 69
+EE VE E + A+ L E+ + +EEE+E EEE ++ +
Sbjct: 243 IEETKVEDEKSEMEDALTAIAEELAVSVKEEEKEEEAEGKEEEQEAEEEVAAAKKSPVKA 302
Query: 70 TTPKGEE 76
TTP+ +E
Sbjct: 303 TTPEIKE 309
Score = 27.7 bits (60), Expect = 4.7
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 42 VEKTEQHEEEE-EEEEEETFMEEEEEECSTTPKGEEARIPATLKCPPPPRKPK 93
VE+ E EE++ EE+ EE +EE + K E+A+ P K P KPK
Sbjct: 363 VEEAEAKEEKKTEEKSEEVAAKEEPVTEAKVGKPEKAKSPVP-KSPVEEVKPK 414
>NFM_HUMAN (P07197) Neurofilament triplet M protein (160 kDa
neurofilament protein) (Neurofilament medium
polypeptide) (NF-M) (Neurofilament 3)
Length = 915
Score = 40.0 bits (92), Expect = 0.001
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 5 EKSQQVEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETFMEEE 64
EK + EE+ E E+ + +A ++ P+ T P K E+ E+EEEE +EE EEE
Sbjct: 486 EKKEAAEEKEEEPEAEE---EEVAAKK--SPVKATAPEVKEEEGEKEEEEGQEE---EEE 537
Query: 65 EEECSTTPKGEE 76
E+E + + + EE
Sbjct: 538 EDEGAKSDQAEE 549
Score = 31.2 bits (69), Expect = 0.43
Identities = 25/77 (32%), Positives = 38/77 (48%), Gaps = 6/77 (7%)
Query: 10 VEERGVESESRKWVITGIALRRPLKPIY---TTTPVEKTEQHEEEEEEEEE---ETFMEE 63
VEE+G S+ V P P+ + V K EQ EEEE+E +E E +E+
Sbjct: 660 VEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEK 719
Query: 64 EEEECSTTPKGEEARIP 80
+EE+ P+ ++A P
Sbjct: 720 KEEKPKDVPEKKKAESP 736
Score = 29.6 bits (65), Expect = 1.2
Identities = 28/97 (28%), Positives = 37/97 (37%), Gaps = 14/97 (14%)
Query: 6 KSQQVEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETFMEEEE 65
KS Q EE G E E G E + E EE E +EE +EE+
Sbjct: 543 KSDQAEEGGSEKEGSSEKEEG-----------EQEEGETEAEAEGEEAEAKEEKKVEEKS 591
Query: 66 EECSTTPKGEEARIPATLKCPPPPRKPKPSLKCNFRG 102
EE +T EE A ++ P + P P +G
Sbjct: 592 EEVATK---EELVADAKVEKPEKAKSPVPKSPVEEKG 625
Score = 27.7 bits (60), Expect = 4.7
Identities = 20/67 (29%), Positives = 30/67 (43%), Gaps = 1/67 (1%)
Query: 10 VEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETFMEEEEEECS 69
+EE VE E + A+ L E E+ EEE E EEEE ++ + +
Sbjct: 456 IEETKVEDEKSEMEEALTAITEELAASMKEEKKEAAEEKEEEPEAEEEEVAAKKSPVK-A 514
Query: 70 TTPKGEE 76
T P+ +E
Sbjct: 515 TAPEVKE 521
>MYT1_HUMAN (Q01538) Myelin transcription factor 1 (MYT1) (MYTI)
(Proteolipid protein binding protein) (PLPB1)
Length = 1121
Score = 40.0 bits (92), Expect = 0.001
Identities = 21/38 (55%), Positives = 24/38 (62%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIP 80
E+ E+ EEEEEEEEEE EEEEEE + EE P
Sbjct: 272 EEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAP 309
Score = 38.9 bits (89), Expect = 0.002
Identities = 25/56 (44%), Positives = 32/56 (56%), Gaps = 1/56 (1%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKCPPPPRKPK-PSLK 97
E+ E+ EEEEEEEEEE EEEEEE + +E + + P R P+ PS K
Sbjct: 282 EEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQEDTSHTSAQKAPELRGPESPSPK 337
Score = 38.1 bits (87), Expect = 0.004
Identities = 20/34 (58%), Positives = 23/34 (66%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ EEEEEEEEEE EEEEEE + EE
Sbjct: 269 EEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEE 302
Score = 37.7 bits (86), Expect = 0.005
Identities = 20/34 (58%), Positives = 22/34 (63%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E EEEEEEEEEE EEEEEE + EE
Sbjct: 270 EEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 303
Score = 37.4 bits (85), Expect = 0.006
Identities = 19/34 (55%), Positives = 23/34 (66%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ ++ EEEEEEEEEE EEEEEE + EE
Sbjct: 271 EEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 304
Score = 37.4 bits (85), Expect = 0.006
Identities = 19/34 (55%), Positives = 23/34 (66%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ EE+EEEEEEE EEEEEE + EE
Sbjct: 266 EEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEE 299
Score = 37.4 bits (85), Expect = 0.006
Identities = 19/34 (55%), Positives = 23/34 (66%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ ++ EEEEEEEEEE EEEEEE + EE
Sbjct: 258 EEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEE 291
Score = 37.4 bits (85), Expect = 0.006
Identities = 19/34 (55%), Positives = 23/34 (66%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ EEE+EEEEEE EEEEEE + EE
Sbjct: 265 EEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEE 298
Score = 37.4 bits (85), Expect = 0.006
Identities = 19/34 (55%), Positives = 23/34 (66%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ E+EEEEEEEE EEEEEE + EE
Sbjct: 267 EEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEE 300
Score = 37.4 bits (85), Expect = 0.006
Identities = 19/34 (55%), Positives = 23/34 (66%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ EEEEEEEEE+ EEEEEE + EE
Sbjct: 259 EEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEE 292
Score = 37.4 bits (85), Expect = 0.006
Identities = 19/34 (55%), Positives = 23/34 (66%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ EEEEEE+EEE EEEEEE + EE
Sbjct: 262 EEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEE 295
Score = 37.4 bits (85), Expect = 0.006
Identities = 19/34 (55%), Positives = 23/34 (66%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ EEEEE+EEEE EEEEEE + EE
Sbjct: 263 EEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEE 296
Score = 37.4 bits (85), Expect = 0.006
Identities = 19/34 (55%), Positives = 23/34 (66%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ +EEEEEEEEE EEEEEE + EE
Sbjct: 268 EEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEE 301
Score = 37.4 bits (85), Expect = 0.006
Identities = 19/34 (55%), Positives = 23/34 (66%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ EEEE+EEEEE EEEEEE + EE
Sbjct: 264 EEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEE 297
Score = 36.6 bits (83), Expect = 0.010
Identities = 20/43 (46%), Positives = 26/43 (59%)
Query: 34 KPIYTTTPVEKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
K I + ++ E+ EEEEEEE+EE EEEEEE + EE
Sbjct: 252 KGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEE 294
>TOP1_YEAST (P04786) DNA topoisomerase I (EC 5.99.1.2)
Length = 769
Score = 39.7 bits (91), Expect = 0.001
Identities = 32/86 (37%), Positives = 43/86 (49%), Gaps = 7/86 (8%)
Query: 36 IYTTTPVEKTEQHEEEEEEEEEETFMEEEEEECSTTPK-GEEARIP-ATLK----CPPPP 89
+ TT E+ + ++ EEEEEE+ +EEEEE K E+ I TLK PPP
Sbjct: 99 VKTTKKEEQENEKKKREEEEEEDKKAKEEEEEYKWWEKENEDDTIKWVTLKHNGVIFPPP 158
Query: 90 RKPKPS-LKCNFRGGEFFTPPDLEAV 114
+P PS +K + G PP E V
Sbjct: 159 YQPLPSHIKLYYDGKPVDLPPQAEEV 184
>ECM2_HUMAN (O94769) Extracellular matrix protein 2 precursor
(Matrix glycoprotein SC1/ECM2)
Length = 699
Score = 39.7 bits (91), Expect = 0.001
Identities = 19/48 (39%), Positives = 29/48 (59%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKCPPPPR 90
++ + EEEE+EEEE EE+EE+ +G+ R+P+ P PPR
Sbjct: 264 QQRQGREEEEDEEEEGEEGEEDEEDEEDPVRGDMFRMPSRSPLPAPPR 311
>TRX2_MOUSE (O08550) Trithorax homolog 2 (WW domain binding
protein 7) (Fragment)
Length = 290
Score = 39.3 bits (90), Expect = 0.002
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 44 KTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKCPPPPRKPKP 94
+ + + ++EEEEET EEE + EEA++P+ PP P P P
Sbjct: 3 RDDNEDNNKQEEEEETERAVAEEEAMLAKEKEEAKLPSPPLTPPVPSPPPP 53
Score = 27.7 bits (60), Expect = 4.7
Identities = 17/57 (29%), Positives = 23/57 (39%), Gaps = 5/57 (8%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTP-----KGEEARIPATLKCPPPPRKPKP 94
E+ E+ E EEE E+EE + + P +P PPPP P P
Sbjct: 13 EEEEETERAVAEEEAMLAKEKEEAKLPSPPLTPPVPSPPPPLPPPSTSPPPPASPLP 69
>RGP1_MOUSE (P46061) Ran GTPase-activating protein 1
Length = 589
Score = 39.3 bits (90), Expect = 0.002
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKCPPPPRKPKPSL 96
++ E+ EE+EE+++EE +EEEEE GEE P+ P +P P L
Sbjct: 375 DEEEEDEEDEEDDDEEEEEQEEEEEPPQRGSGEEPATPSRKILDPNSGEPAPVL 428
Score = 28.5 bits (62), Expect = 2.8
Identities = 15/31 (48%), Positives = 18/31 (57%)
Query: 46 EQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E +E+EEEE EE EEE+EE EE
Sbjct: 361 EGEDEDEEEEGEEDDEEEEDEEDEEDDDEEE 391
Score = 28.1 bits (61), Expect = 3.6
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 46 EQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKCPP 87
++ E+E+EEEE E EEEE+E EE + PP
Sbjct: 360 DEGEDEDEEEEGEEDDEEEEDEEDEEDDDEEEEEQEEEEEPP 401
>GARP_PLAFF (P13816) Glutamic acid-rich protein precursor
Length = 678
Score = 39.3 bits (90), Expect = 0.002
Identities = 19/26 (73%), Positives = 21/26 (80%)
Query: 42 VEKTEQHEEEEEEEEEETFMEEEEEE 67
VE+ E+ EEEEEEEEEE EEEEEE
Sbjct: 572 VEEDEEEEEEEEEEEEEEEEEEEEEE 597
Score = 38.9 bits (89), Expect = 0.002
Identities = 20/34 (58%), Positives = 23/34 (66%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ EEEEEEEEEE EEEEEE + EE
Sbjct: 577 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEE 610
Score = 38.5 bits (88), Expect = 0.003
Identities = 20/34 (58%), Positives = 23/34 (66%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ EEEEEEEEEE EEEEEE + EE
Sbjct: 570 EEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEE 603
Score = 36.6 bits (83), Expect = 0.010
Identities = 20/34 (58%), Positives = 21/34 (60%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E E EEEEEEEEEE EEEEEE + EE
Sbjct: 571 EVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 604
Score = 36.2 bits (82), Expect = 0.013
Identities = 18/34 (52%), Positives = 22/34 (63%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ EEEEEEEEEE EEE+E+ EE
Sbjct: 584 EEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAEE 617
Score = 35.4 bits (80), Expect = 0.023
Identities = 19/34 (55%), Positives = 22/34 (63%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E E+ EE+EEEEEEE EEEEEE + EE
Sbjct: 567 EDEEEVEEDEEEEEEEEEEEEEEEEEEEEEEEEE 600
Score = 35.4 bits (80), Expect = 0.023
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 46 EQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
++ EEEEEEEEEE EEEEEE + EE
Sbjct: 575 DEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 605
Score = 35.0 bits (79), Expect = 0.030
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 42 VEKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
V++ E+ EE+EEEEEE EEEEEE + EE
Sbjct: 565 VQEDEEEVEEDEEEEEEEEEEEEEEEEEEEEEEEE 599
Score = 34.7 bits (78), Expect = 0.039
Identities = 18/34 (52%), Positives = 22/34 (63%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
++ E E+EEEEEEEE EEEEEE + EE
Sbjct: 568 DEEEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEE 601
Score = 34.7 bits (78), Expect = 0.039
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ EEEEEEEEEE +E+EE+ + E+
Sbjct: 587 EEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDED 620
Score = 34.7 bits (78), Expect = 0.039
Identities = 18/34 (52%), Positives = 22/34 (63%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ + +EEEEEEEEE EEEEEE + EE
Sbjct: 569 EEEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEE 602
Score = 33.1 bits (74), Expect = 0.11
Identities = 23/72 (31%), Positives = 36/72 (49%), Gaps = 2/72 (2%)
Query: 5 EKSQQVEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETFMEEE 64
+K ++EE E + +K V + K + + + ++ E EE+EEEEE EEE
Sbjct: 529 KKMAKIEE--AELQKQKHVDKEEDKKEESKEVQEESKEVQEDEEEVEEDEEEEEEEEEEE 586
Query: 65 EEECSTTPKGEE 76
EEE + EE
Sbjct: 587 EEEEEEEEEEEE 598
Score = 31.6 bits (70), Expect = 0.33
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ EEEEEEEEE+ E+E++ EE
Sbjct: 591 EEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEE 624
Score = 30.0 bits (66), Expect = 0.96
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ EEEEEE+E+E ++ EE+ + E+
Sbjct: 594 EEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDED 627
Score = 30.0 bits (66), Expect = 0.96
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEE 67
E ++ E+E+EE+EEE EEEE E
Sbjct: 641 EDDDEDEDEDEEDEEEEEEEEEESE 665
Score = 29.6 bits (65), Expect = 1.2
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEE 67
++ + E+E+E+EE+E EEEEEE
Sbjct: 639 DEEDDDEDEDEDEEDEEEEEEEEEE 663
Score = 29.6 bits (65), Expect = 1.2
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 46 EQHEEEEEEEEEETFMEEEEEE 67
E+ ++E+E+E+EE EEEEEE
Sbjct: 640 EEDDDEDEDEDEEDEEEEEEEE 661
Score = 29.3 bits (64), Expect = 1.6
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 46 EQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLK 84
E+ ++EE+++E+E EE+EEE + E +I L+
Sbjct: 635 EEDDDEEDDDEDEDEDEEDEEEEEEEEEESEKKIKRNLR 673
Score = 28.9 bits (63), Expect = 2.1
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEE 67
E ++ +++E+E+E+E EEEEEE
Sbjct: 636 EDDDEEDDDEDEDEDEEDEEEEEEE 660
Score = 28.5 bits (62), Expect = 2.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ EE+E+EE+E+ E+E++ EE
Sbjct: 598 EEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEE 631
Score = 28.5 bits (62), Expect = 2.8
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEE 67
E+ + E+++E+E+E+ EEEEEE
Sbjct: 635 EEDDDEEDDDEDEDEDEEDEEEEEE 659
Score = 27.7 bits (60), Expect = 4.7
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEE 67
E ++ EE+EEEEEEE EEE E+
Sbjct: 645 EDEDEDEEDEEEEEEE---EEESEK 666
Score = 27.3 bits (59), Expect = 6.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E E+E++ EE+E EE+E++ E+
Sbjct: 604 EEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDEED 637
Score = 27.3 bits (59), Expect = 6.2
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEA 77
E+ + E+++EE+++E E+EE+E + EE+
Sbjct: 630 EEDDDEEDDDEEDDDEDEDEDEEDEEEEEEEEEES 664
Score = 27.3 bits (59), Expect = 6.2
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEE 67
++ + EE+++E+E+E +EEEEE
Sbjct: 634 DEEDDDEEDDDEDEDEDEEDEEEEE 658
Score = 26.9 bits (58), Expect = 8.1
Identities = 21/72 (29%), Positives = 31/72 (42%), Gaps = 4/72 (5%)
Query: 5 EKSQQVEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETFMEEE 64
E QQ ++ E+ + V L PL + T ++ E EEE +E E + +E
Sbjct: 341 ETMQQPDQTSEETNNEIMV----PLPSPLTDVTTPEEHKEGEHKEEEHKEGEHKEGEHKE 396
Query: 65 EEECSTTPKGEE 76
EE K EE
Sbjct: 397 EEHKEEEHKKEE 408
>ACIN_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in the
nucleus (Acinus)
Length = 1338
Score = 39.3 bits (90), Expect = 0.002
Identities = 32/97 (32%), Positives = 43/97 (43%), Gaps = 21/97 (21%)
Query: 5 EKSQQVEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQH---------------- 48
EK + +E+ + E R + + + P Y+ T E+ +Q
Sbjct: 212 EKGESDDEKPRKGERRS---SRVRQAKSKLPEYSQTAEEEEDQETPSRNLRVRADRNLKI 268
Query: 49 -EEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLK 84
EEEEEEEEEE +EEEEE K EA P TLK
Sbjct: 269 EEEEEEEEEEEDDDDEEEEEVDEAQKSREAEAP-TLK 304
>ABF1_MOUSE (Q61329) Alpha-fetoprotein enhancer binding protein (AT
motif-binding factor) (AT-binding transcription factor
1)
Length = 3726
Score = 39.3 bits (90), Expect = 0.002
Identities = 21/36 (58%), Positives = 23/36 (63%)
Query: 42 VEKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEA 77
VE E+ E EEEEEEEE EEEEEE + EEA
Sbjct: 457 VEPAEEEEAEEEEEEEEEAEEEEEEEEEEEEEEEEA 492
Score = 37.7 bits (86), Expect = 0.005
Identities = 20/44 (45%), Positives = 24/44 (54%)
Query: 41 PVEKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLK 84
P E+ E EEEEEEEE E EEEEEE + + P L+
Sbjct: 459 PAEEEEAEEEEEEEEEAEEEEEEEEEEEEEEEEASKGLFPNDLE 502
Score = 34.7 bits (78), Expect = 0.039
Identities = 26/67 (38%), Positives = 29/67 (42%), Gaps = 26/67 (38%)
Query: 3 FSEKSQQVEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETFME 62
FSEK + EE E E E+ E+ EEEEEEEEE E
Sbjct: 453 FSEKVEPAEEEEAEEE------------------------EEEEEEAEEEEEEEEEE--E 486
Query: 63 EEEEECS 69
EEEEE S
Sbjct: 487 EEEEEAS 493
Score = 33.9 bits (76), Expect = 0.066
Identities = 19/34 (55%), Positives = 20/34 (57%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
EK E EEEE EEEEE E EEEE + EE
Sbjct: 455 EKVEPAEEEEAEEEEEEEEEAEEEEEEEEEEEEE 488
Score = 27.3 bits (59), Expect = 6.2
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 34 KPIYTTTPVEKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKCP-PPPRKP 92
KP P + Q +E++ + + E + E+ E T + PA P PPP+ P
Sbjct: 2438 KPKQADPPSAQPNQTQEKQGQPKPEMQQQLEQLEQKTNAPQPKLPQPAAPSLPQPPPQAP 2497
Query: 93 KP 94
P
Sbjct: 2498 PP 2499
>TCOF_MOUSE (O08784) Treacle protein (Treacher Collins syndrome
protein homolog)
Length = 1320
Score = 38.9 bits (89), Expect = 0.002
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 28 ALRRPLKPIYT--TTPVEKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKC 85
AL + + P++T T P K E+ E EE+ + EE+E TP G R+P
Sbjct: 637 ALGQGVAPVHTQKTGPSVKAMAQEDSESLEEDSSSEEEDETPAQATPLG---RLPQAKAN 693
Query: 86 PPPPRKPKPS 95
PPP + P S
Sbjct: 694 PPPTKTPPAS 703
>RYR1_RABIT (P11716) Ryanodine receptor 1 (Skeletal muscle-type
ryanodine receptor) (RyR1) (RYR-1) (Skeletal muscle
calcium release channel)
Length = 5037
Score = 38.9 bits (89), Expect = 0.002
Identities = 22/49 (44%), Positives = 30/49 (60%)
Query: 29 LRRPLKPIYTTTPVEKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEA 77
+++ LK I E+ E+ EEEEEEEEEE EEE+EE + E+A
Sbjct: 1859 VKQILKMIEPEVFTEEEEEEEEEEEEEEEEEEDEEEKEEDEEEEEKEDA 1907
Score = 38.5 bits (88), Expect = 0.003
Identities = 19/34 (55%), Positives = 23/34 (66%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ EEEEEE+EEE +EEEEE K EE
Sbjct: 1879 EEEEEEEEEEEEDEEEKEEDEEEEEKEDAEKEEE 1912
Score = 38.1 bits (87), Expect = 0.004
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIP 80
E+ E+ EEEEEEE+EE E+EEEE + EE P
Sbjct: 1878 EEEEEEEEEEEEEDEEEKEEDEEEEEKEDAEKEEEEAP 1915
Score = 37.7 bits (86), Expect = 0.005
Identities = 26/75 (34%), Positives = 35/75 (46%)
Query: 23 VITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPAT 82
++ GI +K I E + EEEEEEEEEE EEE+EE + EE + A
Sbjct: 1849 LVMGIFGDEDVKQILKMIEPEVFTEEEEEEEEEEEEEEEEEEDEEEKEEDEEEEEKEDAE 1908
Query: 83 LKCPPPPRKPKPSLK 97
+ P K L+
Sbjct: 1909 KEEEEAPEGEKEDLE 1923
Score = 30.0 bits (66), Expect = 0.96
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 50 EEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKCPPPPRKPKPSLKCNFRGG---EFF 106
EEEE E E E E + GE+ +P PP P P K GG EF+
Sbjct: 4482 EEEELVPEPEPEPEPEPEKADEENGEKEEVPEAPPEPPKKAPPSPPAKKEEAGGAGMEFW 4541
Query: 107 TPPDLEAV-FIRHVER 121
+++ V F+ ++ R
Sbjct: 4542 GELEVQRVKFLNYLSR 4557
Score = 28.1 bits (61), Expect = 3.6
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKCPPPPRKPKPSLKCNFRG 102
EK E EEEE+E+ E+ EEEE P+GE+ + L P K + CN
Sbjct: 1894 EKEEDEEEEEKEDAEK---EEEE-----APEGEKEDLEEGLLQMKLPESVKLQM-CNLL- 1943
Query: 103 GEFFTPPDLE 112
E+F +L+
Sbjct: 1944 -EYFCDQELQ 1952
>I28R_MOUSE (Q8CGK5) Interleukin-28 receptor alpha chain precursor
(IL-28R-alpha) (IL-28RA) (Cytokine receptor family 2
member 12) (Cytokine receptor class-II CRF2-12)
(Interferon lambda receptor 1) (IFN-lambda R1)
Length = 535
Score = 38.9 bits (89), Expect = 0.002
Identities = 31/82 (37%), Positives = 41/82 (49%), Gaps = 8/82 (9%)
Query: 3 FSEKSQQVEERGVESESRKWVITG-IALRRPLKPI------YTTTPVEKTEQHEEEEEEE 55
FSE VEE + S W I+G ++ +R L P+ T T EEE+E+
Sbjct: 431 FSEDLGTVEEPLKDGLSG-WRISGSLSSKRDLAPVEPPVSLQTLTFCWVNNPEGEEEQED 489
Query: 56 EEETFMEEEEEECSTTPKGEEA 77
EEE EEEEE+ + PKG A
Sbjct: 490 EEEEEEEEEEEDWESEPKGSNA 511
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.309 0.130 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,823,841
Number of Sequences: 164201
Number of extensions: 906074
Number of successful extensions: 23308
Number of sequences better than 10.0: 999
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 284
Number of HSP's that attempted gapping in prelim test: 9793
Number of HSP's gapped (non-prelim): 5561
length of query: 123
length of database: 59,974,054
effective HSP length: 99
effective length of query: 24
effective length of database: 43,718,155
effective search space: 1049235720
effective search space used: 1049235720
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0076a.6