BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0075.14
(356 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATPG_MOUSE (Q91VR2) ATP synthase gamma chain, mitochondrial prec... 31 4.2
EX7L_NEIMB (Q9JYZ2) Probable exodeoxyribonuclease VII large subu... 30 7.1
SPCN_RAT (P16086) Spectrin alpha chain, brain (Spectrin, non-ery... 30 9.3
SPCN_MOUSE (P16546) Spectrin alpha chain, brain (Spectrin, non-e... 30 9.3
SPCN_HUMAN (Q13813) Spectrin alpha chain, brain (Spectrin, non-e... 30 9.3
SPCN_CHICK (P07751) Spectrin alpha chain, brain (Spectrin, non-e... 30 9.3
GLT_DROME (P33438) Glutactin precursor 30 9.3
EX7L_NEIMA (Q9JTY8) Probable exodeoxyribonuclease VII large subu... 30 9.3
CMF1_BACSU (P39145) ComF operon protein 1 30 9.3
>ATPG_MOUSE (Q91VR2) ATP synthase gamma chain, mitochondrial
precursor (EC 3.6.3.14)
Length = 298
Score = 31.2 bits (69), Expect = 4.2
Identities = 27/94 (28%), Positives = 41/94 (42%), Gaps = 9/94 (9%)
Query: 25 NYFTQRVDAAKKEGISPLAKCTTAMRMLAYGVAADAVDEYIKIGGTTALECLRRFCNGII 84
N T + + + I + K T +M+M+A A A E L+ R + G +
Sbjct: 24 NMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERE---------LKPARVYGTGSL 74
Query: 85 *LYEHEYLRAPTQEDLQRILQVSEQRGFPGMIGS 118
LYE ++AP + I+ VS RG G I S
Sbjct: 75 ALYEKADIKAPEDKKKHLIIGVSSDRGLCGAIHS 108
>EX7L_NEIMB (Q9JYZ2) Probable exodeoxyribonuclease VII large subunit
(EC 3.1.11.6) (Exonuclease VII large subunit)
Length = 451
Score = 30.4 bits (67), Expect = 7.1
Identities = 19/75 (25%), Positives = 36/75 (47%), Gaps = 2/75 (2%)
Query: 168 GTLNDINVLDRSPVFDDVEQGKAPTVSFIVNQRPYNMAYYLADGIYPSYPTFVKSIRLPQ 227
G++ D+ + PV +E P VS + ++ + +A ++AD P+ PT + P
Sbjct: 208 GSIEDLWAFNEEPVVRAIESCTVPVVSGVGHETDFTLADFVADMRAPT-PTGAAELVSPN 266
Query: 228 SEPDKLFAQVQERCR 242
+ + L Q +CR
Sbjct: 267 RQ-ESLHRLAQAQCR 280
>SPCN_RAT (P16086) Spectrin alpha chain, brain (Spectrin,
non-erythroid alpha chain) (Alpha-II spectrin) (Fodrin
alpha chain)
Length = 2472
Score = 30.0 bits (66), Expect = 9.3
Identities = 15/42 (35%), Positives = 20/42 (46%)
Query: 263 ARLWDIADLGIIMRSCIILHNMIVEDERDTFAQRWTDFEQSG 304
++L I DLG M +IL N E AQ+W +Q G
Sbjct: 2260 SQLKKIEDLGAAMEEALILDNKYTEHSTVGLAQQWDQLDQLG 2301
>SPCN_MOUSE (P16546) Spectrin alpha chain, brain (Spectrin,
non-erythroid alpha chain) (Alpha-II spectrin) (Fodrin
alpha chain) (Fragment)
Length = 1458
Score = 30.0 bits (66), Expect = 9.3
Identities = 15/42 (35%), Positives = 20/42 (46%)
Query: 263 ARLWDIADLGIIMRSCIILHNMIVEDERDTFAQRWTDFEQSG 304
++L I DLG M +IL N E AQ+W +Q G
Sbjct: 1246 SQLKKIEDLGAAMEEALILDNKYTEHSTVGLAQQWDQLDQLG 1287
>SPCN_HUMAN (Q13813) Spectrin alpha chain, brain (Spectrin,
non-erythroid alpha chain) (Alpha-II spectrin) (Fodrin
alpha chain)
Length = 2472
Score = 30.0 bits (66), Expect = 9.3
Identities = 15/42 (35%), Positives = 20/42 (46%)
Query: 263 ARLWDIADLGIIMRSCIILHNMIVEDERDTFAQRWTDFEQSG 304
++L I DLG M +IL N E AQ+W +Q G
Sbjct: 2260 SQLKKIEDLGAAMEEALILDNKYTEHSTVGLAQQWDQLDQLG 2301
>SPCN_CHICK (P07751) Spectrin alpha chain, brain (Spectrin,
non-erythroid alpha chain) (Fodrin alpha chain)
Length = 2477
Score = 30.0 bits (66), Expect = 9.3
Identities = 15/42 (35%), Positives = 20/42 (46%)
Query: 263 ARLWDIADLGIIMRSCIILHNMIVEDERDTFAQRWTDFEQSG 304
++L I DLG M +IL N E AQ+W +Q G
Sbjct: 2265 SQLKKIEDLGAAMEEALILDNKYTEHSTVGLAQQWDQLDQLG 2306
>GLT_DROME (P33438) Glutactin precursor
Length = 1026
Score = 30.0 bits (66), Expect = 9.3
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 213 YPSYPTFVKSIRLPQSEPDKLFAQVQERCRKDIE 246
YPSY + ++++ +E D+++A+ QER R+ E
Sbjct: 862 YPSYEEYSRALQEKNAERDRIYAEEQERERQQQE 895
>EX7L_NEIMA (Q9JTY8) Probable exodeoxyribonuclease VII large subunit
(EC 3.1.11.6) (Exonuclease VII large subunit)
Length = 451
Score = 30.0 bits (66), Expect = 9.3
Identities = 18/82 (21%), Positives = 38/82 (45%)
Query: 168 GTLNDINVLDRSPVFDDVEQGKAPTVSFIVNQRPYNMAYYLADGIYPSYPTFVKSIRLPQ 227
G++ D+ + PV +E P VS + ++ + +A ++AD P+ + + +
Sbjct: 208 GSIEDLWAFNEEPVVRAIEACTVPVVSGVGHETDFTLADFVADVRAPTPTGAAELVSPNR 267
Query: 228 SEPDKLFAQVQERCRKDIERAF 249
E AQ Q R + +E+ +
Sbjct: 268 QESLHRLAQAQGRLKTVLEQRY 289
>CMF1_BACSU (P39145) ComF operon protein 1
Length = 463
Score = 30.0 bits (66), Expect = 9.3
Identities = 11/36 (30%), Positives = 21/36 (57%), Gaps = 1/36 (2%)
Query: 126 WKNCPKAWEGQFTRGDKGTTTVILEAVA-SHDLWIW 160
WK+ W+G+ + G + V++EA++ +L IW
Sbjct: 110 WKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIW 145
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.325 0.139 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,466,646
Number of Sequences: 164201
Number of extensions: 1763374
Number of successful extensions: 4583
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4577
Number of HSP's gapped (non-prelim): 9
length of query: 356
length of database: 59,974,054
effective HSP length: 111
effective length of query: 245
effective length of database: 41,747,743
effective search space: 10228197035
effective search space used: 10228197035
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0075.14