BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0072a.9
         (239 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

DNLI_PYRAE (O93723) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleo...    30  6.7
GRAB_BACSU (P07869) Spore germination protein A2                       29  8.7

>DNLI_PYRAE (O93723) DNA ligase (EC 6.5.1.1)
           (Polydeoxyribonucleotide synthase [ATP])
          Length = 584

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 79  GEEGIECEGTFEENAGITIVYAFGYSLYLRVIRASTGDMIDRMVRIDLLIVGHSEGKSRP 138
           G EG+ C+      + I  + A G++ +++  R    +MID    +DL++VG   G+ + 
Sbjct: 398 GTEGLICKSP----SSIYEMGARGWN-WIKYKRDYRSEMIDT---VDLVVVGAFHGRGKR 449

Query: 139 AGLGLIRLCQGFDPCT 154
           AGL    L   +DP T
Sbjct: 450 AGLYGAFLLAAYDPST 465


>GRAB_BACSU (P07869) Spore germination protein A2
          Length = 365

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 5   RHYRQWLLKEGREGLGKEKDDHCSLVFALFIDGISDCVTYLQEINLLDGFLLEGTPLSVA 64
           +H    L +  +EGLGK       L+   +  G++   T      ++  FLLE TP+ V 
Sbjct: 68  KHQYPSLFEYLKEGLGKWIGSIIGLLICGYFLGVASFETRAMA-EMVKFFLLERTPIQVI 126

Query: 65  YVKFPCMGSF 74
            + F C G +
Sbjct: 127 ILTFICCGIY 136


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.323    0.141    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,512,411
Number of Sequences: 164201
Number of extensions: 1238478
Number of successful extensions: 2090
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2090
Number of HSP's gapped (non-prelim): 2
length of query: 239
length of database: 59,974,054
effective HSP length: 107
effective length of query: 132
effective length of database: 42,404,547
effective search space: 5597400204
effective search space used: 5597400204
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)