BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0067b.6
(404 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-... 54 5e-07
CNBP_RAT (P62634) Cellular nucleic acid binding protein (CNBP) (... 54 9e-07
CNBP_HUMAN (P62633) Cellular nucleic acid binding protein (CNBP)... 54 9e-07
GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-... 52 4e-06
CNBP_CHICK (O42395) Cellular nucleic acid binding protein (CNBP) 50 8e-06
CNBP_MOUSE (P53996) Cellular nucleic acid binding protein (CNBP)... 50 1e-05
BYR3_SCHPO (P36627) Cellular nucleic acid binding protein homolog 49 2e-05
GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; C... 49 2e-05
GAG_EIAVY (P03351) Gag polyprotein [Contains: Core protein p15; ... 47 7e-05
GIS2_YEAST (P53849) Zinc-finger protein GIS2 47 9e-05
HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding p... 47 1e-04
YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I 44 7e-04
GAG_SIVAT (P05892) Gag polyprotein [Contains: Core protein p17; ... 44 0.001
GAG_SIVAG (P27978) Gag polyprotein [Contains: Core protein p17; ... 43 0.001
GAG_OMVVS (P16900) Gag polyprotein [Contains: Core protein p16; ... 43 0.002
GAG_FIVT2 (P31821) Gag polyprotein [Contains: Core protein p15; ... 43 0.002
GAG_SIVGB (P22381) Gag polyprotein [Contains: Core protein p17; ... 42 0.004
GAG_FIVSD (P19027) Gag polyprotein [Contains: Core protein p15; ... 42 0.004
GRP2_NICSY (P27484) Glycine-rich protein 2 41 0.005
GAG_HV1A2 (P03349) Gag polyprotein [Contains: Core protein p17 (... 41 0.005
>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-)
(Germline helicase-2)
Length = 974
Score = 54.3 bits (129), Expect = 5e-07
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 267 GTGFTSGSYRPMTGAAGGSGDQTLKKETTCFRCGEPGHYANACPDTRPK-----CFNCNR 321
G+GF SG G+ GG D+ ++ CF C +PGH +N CP+ + + C+NC +
Sbjct: 231 GSGFGSGGNSNGFGSGGGGQDRG-ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQ 289
Query: 322 MGHTAGQC 329
GH + C
Sbjct: 290 PGHNSRDC 297
Score = 51.6 bits (122), Expect = 4e-06
Identities = 22/69 (31%), Positives = 36/69 (51%), Gaps = 7/69 (10%)
Query: 268 TGFTSGSYRPMTGA--AGGSGDQTLKKETTCFRCGEPGHYANACPDTRPK-----CFNCN 320
+GF SG + + +GG G ++ CF C +PGH +N CP+ + + C+NC
Sbjct: 343 SGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQ 402
Query: 321 RMGHTAGQC 329
+ GH + C
Sbjct: 403 QPGHNSRDC 411
Score = 50.8 bits (120), Expect = 6e-06
Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 12/126 (9%)
Query: 252 SREKFQSRGPYQRPAGTGFTSGSYRPMTGAAGGS-----GDQTLKKETTCFRCGEPGHYA 306
SR+ + R P R GFTSG G GG G+ + CF C GH +
Sbjct: 408 SRDCPEERKP--REGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRS 465
Query: 307 NACPDTRPKCFNCNRMGHTAGQCRAPKTEPTVNTARGKRPAAKARVYTMDGERAEEFARG 366
CP+ CFNC GH + +C P A G+ P A Y + EE
Sbjct: 466 AECPEPPRGCFNCGEQGHRSNEC--PNPAKPREGAEGEGPKA---TYVPVEDNMEEVFNM 520
Query: 367 ERKNDG 372
++ ++G
Sbjct: 521 QKISEG 526
Score = 32.0 bits (71), Expect = 2.9
Identities = 21/72 (29%), Positives = 26/72 (35%), Gaps = 6/72 (8%)
Query: 267 GTGFTSG---SYRPMTGAAGGSGDQTLKKETTCFRCGEPGHYANACPDTRPKCFNCNRMG 323
GTGF SG + G G + F G G + CFNC + G
Sbjct: 324 GTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSGGGGQDRG---ERNNNCFNCQQPG 380
Query: 324 HTAGQCRAPKTE 335
H + C PK E
Sbjct: 381 HRSNDCPEPKKE 392
>CNBP_RAT (P62634) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 177
Score = 53.5 bits (127), Expect = 9e-07
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 260 GPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLKKETT-----CFRCGEPGHYANACPDTRP 314
G + R TG G G G + D+ + ++ C+RCGE GH A C
Sbjct: 13 GHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 72
Query: 315 KCFNCNRMGHTAGQCRAPKTE 335
C+NC R GH A C+ PK E
Sbjct: 73 ACYNCGRGGHIAKDCKEPKRE 93
Score = 43.9 bits (102), Expect = 7e-04
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 257 QSRGPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLK---KETTCFRCGEPGHYANACPDTR 313
+ RG + G F S S + G SG +E C+ CG GH A C + +
Sbjct: 32 RGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK 91
Query: 314 PK----CFNCNRMGHTAGQC 329
+ C+NC + GH A C
Sbjct: 92 REREQCCYNCGKPGHLARDC 111
Score = 42.0 bits (97), Expect = 0.003
Identities = 16/44 (36%), Positives = 22/44 (49%), Gaps = 1/44 (2%)
Query: 291 KKETTCFRCGEPGHYANACPDT-RPKCFNCNRMGHTAGQCRAPK 333
++E C+ CG+PGH A C KC++C GH C K
Sbjct: 93 EREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK 136
Score = 40.4 bits (93), Expect = 0.008
Identities = 17/40 (42%), Positives = 20/40 (49%), Gaps = 1/40 (2%)
Query: 296 CFRCGEPGHYANACPDT-RPKCFNCNRMGHTAGQCRAPKT 334
C+RCGE GH A C T C+ C GH A +C T
Sbjct: 137 CYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 176
Score = 38.9 bits (89), Expect = 0.024
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 293 ETTCFRCGEPGHYANACPDTRPKCFNCNRMGHTAGQC 329
E C+ CGE GH C T+ KC+ C GH A C
Sbjct: 116 EQKCYSCGEFGHIQKDC--TKVKCYRCGETGHVAINC 150
>CNBP_HUMAN (P62633) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 177
Score = 53.5 bits (127), Expect = 9e-07
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 260 GPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLKKETT-----CFRCGEPGHYANACPDTRP 314
G + R TG G G G + D+ + ++ C+RCGE GH A C
Sbjct: 13 GHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 72
Query: 315 KCFNCNRMGHTAGQCRAPKTE 335
C+NC R GH A C+ PK E
Sbjct: 73 ACYNCGRGGHIAKDCKEPKRE 93
Score = 43.9 bits (102), Expect = 7e-04
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 257 QSRGPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLK---KETTCFRCGEPGHYANACPDTR 313
+ RG + G F S S + G SG +E C+ CG GH A C + +
Sbjct: 32 RGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK 91
Query: 314 PK----CFNCNRMGHTAGQC 329
+ C+NC + GH A C
Sbjct: 92 REREQCCYNCGKPGHLARDC 111
Score = 42.0 bits (97), Expect = 0.003
Identities = 16/44 (36%), Positives = 22/44 (49%), Gaps = 1/44 (2%)
Query: 291 KKETTCFRCGEPGHYANACPDT-RPKCFNCNRMGHTAGQCRAPK 333
++E C+ CG+PGH A C KC++C GH C K
Sbjct: 93 EREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK 136
Score = 40.4 bits (93), Expect = 0.008
Identities = 17/40 (42%), Positives = 20/40 (49%), Gaps = 1/40 (2%)
Query: 296 CFRCGEPGHYANACPDT-RPKCFNCNRMGHTAGQCRAPKT 334
C+RCGE GH A C T C+ C GH A +C T
Sbjct: 137 CYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 176
Score = 38.9 bits (89), Expect = 0.024
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 293 ETTCFRCGEPGHYANACPDTRPKCFNCNRMGHTAGQC 329
E C+ CGE GH C T+ KC+ C GH A C
Sbjct: 116 EQKCYSCGEFGHIQKDC--TKVKCYRCGETGHVAINC 150
>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-)
(Germline helicase-1)
Length = 763
Score = 51.6 bits (122), Expect = 4e-06
Identities = 30/97 (30%), Positives = 45/97 (45%), Gaps = 8/97 (8%)
Query: 240 GGPMRSGSQNFQSREKFQSRGPYQRPAGTGFTSG--SYRPMTGAAGGSGDQTLKKETTCF 297
G SG + + F G + A TGF SG S+ G G ++ CF
Sbjct: 103 GSTATSGFGSGEKSSAFGGSGGFGGSA-TGFGSGGGSFGGGNSGFGEGGHGGGERNNNCF 161
Query: 298 RCGEPGHYANACPDTRPK-----CFNCNRMGHTAGQC 329
C +PGH ++ CP+ R + C+NC + GHT+ +C
Sbjct: 162 NCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSREC 198
Score = 49.7 bits (117), Expect = 1e-05
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 252 SREKFQSRGPYQRPAG-----TGFTSGSYRPMTGAAGGSGDQTLKKETTCFRCGEPGHYA 306
SRE + R P + G GF + G GG G + CF C GH +
Sbjct: 195 SRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRS 254
Query: 307 NACPDTRPKCFNCNRMGHTAGQCRAP 332
CP+ CFNC GH + +C P
Sbjct: 255 AECPEPPRGCFNCGEQGHRSNECPNP 280
Score = 34.3 bits (77), Expect = 0.58
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 240 GGPMRSGSQNFQSREKFQSRGPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLKKETTCFRC 299
G P S F G ++ + G + G TG GSG + + F
Sbjct: 91 GSPYGGASSGFGGSTATSGFGSGEKSSAFGGSGGFGGSATGF--GSGGGSFGGGNSGF-- 146
Query: 300 GEPGHYANACPDTRPKCFNCNRMGHTAGQCRAPKTE 335
GE GH + CFNC + GH + C P+ E
Sbjct: 147 GEGGHGGG---ERNNNCFNCQQPGHRSSDCPEPRKE 179
>CNBP_CHICK (O42395) Cellular nucleic acid binding protein (CNBP)
Length = 172
Score = 50.4 bits (119), Expect = 8e-06
Identities = 29/77 (37%), Positives = 35/77 (44%), Gaps = 2/77 (2%)
Query: 260 GPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLKKETTCFRCGEPGHYANACPDTRPK-CFN 318
G + R TG G G AG + + C+RCGE GH A C K C+N
Sbjct: 13 GHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDI-CYRCGESGHLAKDCDLQEDKACYN 71
Query: 319 CNRMGHTAGQCRAPKTE 335
C R GH A C+ PK E
Sbjct: 72 CGRGGHIAKDCKEPKRE 88
Score = 45.1 bits (105), Expect = 3e-04
Identities = 24/72 (33%), Positives = 34/72 (46%), Gaps = 8/72 (11%)
Query: 266 AGTGFTSGSYRPMTGAAGGSG----DQTLKKETTCFRCGEPGHYANACPDTRPK----CF 317
AG F S S + G SG D L+++ C+ CG GH A C + + + C+
Sbjct: 35 AGFQFMSSSLPDICYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPKREREQCCY 94
Query: 318 NCNRMGHTAGQC 329
NC + GH A C
Sbjct: 95 NCGKPGHLARDC 106
Score = 42.0 bits (97), Expect = 0.003
Identities = 16/44 (36%), Positives = 22/44 (49%), Gaps = 1/44 (2%)
Query: 291 KKETTCFRCGEPGHYANACPDT-RPKCFNCNRMGHTAGQCRAPK 333
++E C+ CG+PGH A C KC++C GH C K
Sbjct: 88 EREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK 131
Score = 40.4 bits (93), Expect = 0.008
Identities = 17/40 (42%), Positives = 20/40 (49%), Gaps = 1/40 (2%)
Query: 296 CFRCGEPGHYANACPDT-RPKCFNCNRMGHTAGQCRAPKT 334
C+RCGE GH A C T C+ C GH A +C T
Sbjct: 132 CYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 171
Score = 38.9 bits (89), Expect = 0.024
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 293 ETTCFRCGEPGHYANACPDTRPKCFNCNRMGHTAGQC 329
E C+ CGE GH C T+ KC+ C GH A C
Sbjct: 111 EQKCYSCGEFGHIQKDC--TKVKCYRCGETGHVAINC 145
Score = 35.8 bits (81), Expect = 0.20
Identities = 18/70 (25%), Positives = 24/70 (33%), Gaps = 22/70 (31%)
Query: 296 CFRCGEPGHYANACPDTRPK----------------------CFNCNRMGHTAGQCRAPK 333
CF+CG GH+A CP + C+ C GH A C +
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQE 65
Query: 334 TEPTVNTARG 343
+ N RG
Sbjct: 66 DKACYNCGRG 75
>CNBP_MOUSE (P53996) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 178
Score = 49.7 bits (117), Expect = 1e-05
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 260 GPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLKKETT-----CFRCGEPGHYANACPDTRP 314
G + R TG G G G + D+ + ++ C+RCGE GH A C
Sbjct: 13 GHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 72
Query: 315 K-CFNCNRMGHTAGQCRAPKTE 335
+ C+NC R GH A C+ PK E
Sbjct: 73 EACYNCGRGGHIAKDCKEPKRE 94
Score = 47.4 bits (111), Expect = 7e-05
Identities = 25/81 (30%), Positives = 37/81 (44%), Gaps = 8/81 (9%)
Query: 257 QSRGPYQRPAGTGFTSGSYRPMTGAAGGSG----DQTLKKETTCFRCGEPGHYANACPDT 312
+ RG + G F S S + G SG D L+++ C+ CG GH A C +
Sbjct: 32 RGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEP 91
Query: 313 RPK----CFNCNRMGHTAGQC 329
+ + C+NC + GH A C
Sbjct: 92 KREREQCCYNCGKPGHLARDC 112
Score = 42.0 bits (97), Expect = 0.003
Identities = 16/44 (36%), Positives = 22/44 (49%), Gaps = 1/44 (2%)
Query: 291 KKETTCFRCGEPGHYANACPDT-RPKCFNCNRMGHTAGQCRAPK 333
++E C+ CG+PGH A C KC++C GH C K
Sbjct: 94 EREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK 137
Score = 40.4 bits (93), Expect = 0.008
Identities = 17/40 (42%), Positives = 20/40 (49%), Gaps = 1/40 (2%)
Query: 296 CFRCGEPGHYANACPDT-RPKCFNCNRMGHTAGQCRAPKT 334
C+RCGE GH A C T C+ C GH A +C T
Sbjct: 138 CYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 177
Score = 38.9 bits (89), Expect = 0.024
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 293 ETTCFRCGEPGHYANACPDTRPKCFNCNRMGHTAGQC 329
E C+ CGE GH C T+ KC+ C GH A C
Sbjct: 117 EQKCYSCGEFGHIQKDC--TKVKCYRCGETGHVAINC 151
>BYR3_SCHPO (P36627) Cellular nucleic acid binding protein homolog
Length = 179
Score = 49.3 bits (116), Expect = 2e-05
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 288 QTLKKETTCFRCGEPGHYANACPDTRPKCFNCNRMGHTAGQCRAPKTEPT 337
QT + C+ CGE GH A C C+NCN+ GH A +C P+ E T
Sbjct: 11 QTTRPGPRCYNCGENGHQARECTKGSI-CYNCNQTGHKASECTEPQQEKT 59
Score = 43.5 bits (101), Expect = 0.001
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 5/45 (11%)
Query: 291 KKETTCFRCGEPGHYANACPDT-----RPKCFNCNRMGHTAGQCR 330
++E TC+ CG GH CP + +C+ C R+GH A CR
Sbjct: 55 QQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCR 99
Score = 36.6 bits (83), Expect = 0.12
Identities = 13/40 (32%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Query: 291 KKETTCFRCGEPGHYANACPDTRPKCFNCNRMGHTAGQCR 330
+ C+ CG GH A C KC++C ++GH + +C+
Sbjct: 113 RSNMNCYACGSYGHQARDCT-MGVKCYSCGKIGHRSFECQ 151
Score = 36.2 bits (82), Expect = 0.15
Identities = 15/42 (35%), Positives = 21/42 (49%), Gaps = 2/42 (4%)
Query: 296 CFRCGEPGHYANACPDTRPK--CFNCNRMGHTAGQCRAPKTE 335
C+ CG+ GH + C C+ CN+ GH A C +P E
Sbjct: 137 CYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNCTSPVIE 178
Score = 35.8 bits (81), Expect = 0.20
Identities = 24/93 (25%), Positives = 37/93 (38%), Gaps = 5/93 (5%)
Query: 283 GGSGDQTLK--KETTCFRCGEPGHYANAC--PDTRPKCFNCNRMGHTAGQC-RAPKTEPT 337
G +G Q + K + C+ C + GH A+ C P C+ C GH C +P
Sbjct: 23 GENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQG 82
Query: 338 VNTARGKRPAAKARVYTMDGERAEEFARGERKN 370
+ R AR +G+++ G R N
Sbjct: 83 AECYKCGRVGHIARDCRTNGQQSGGRFGGHRSN 115
>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core
protein p2A; Core protein p2B; Core protein p10; Capsid
protein p27; Inner coat protein p12; Protease p15 (EC
3.4.23.-)]
Length = 701
Score = 48.9 bits (115), Expect = 2e-05
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 276 RPMTGAAGGSGDQTLKKETTCFRCGEPGHYANACP------DTRPKCFNCNRMGHTAGQC 329
R G G G + C+ CG PGHY CP ++R +C CN MGH A QC
Sbjct: 493 RERDGQTGSGG----RARGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQC 548
Query: 330 R 330
R
Sbjct: 549 R 549
>GAG_EIAVY (P03351) Gag polyprotein [Contains: Core protein p15;
Major core protein p26 (Capsid protein p26); Core
protein p11; Core protein p9]
Length = 486
Score = 47.4 bits (111), Expect = 7e-05
Identities = 25/61 (40%), Positives = 33/61 (53%), Gaps = 5/61 (8%)
Query: 272 SGSYRPMTGAAGGSGDQTLKKETTCFRCGEPGHYANACPDTRPK-CFNCNRMGHTAGQCR 330
+G P G A G LK TC+ CG+PGH ++ C PK CF C + GH + QCR
Sbjct: 361 TGLAGPFKGGALKGGP--LKAAQTCYNCGKPGHLSSQC--RAPKVCFKCKQPGHFSKQCR 416
Query: 331 A 331
+
Sbjct: 417 S 417
Score = 33.9 bits (76), Expect = 0.76
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 316 CFNCNRMGHTAGQCRAPK 333
C+NC + GH + QCRAPK
Sbjct: 383 CYNCGKPGHLSSQCRAPK 400
>GIS2_YEAST (P53849) Zinc-finger protein GIS2
Length = 153
Score = 47.0 bits (110), Expect = 9e-05
Identities = 18/38 (47%), Positives = 24/38 (62%), Gaps = 2/38 (5%)
Query: 296 CFRCGEPGHYANACPDTRPKCFNCNRMGHTAGQCRAPK 333
C+ CGE GH + C T +CFNCN+ GH + +C PK
Sbjct: 49 CYNCGETGHVRSEC--TVQRCFNCNQTGHISRECPEPK 84
Score = 44.3 bits (103), Expect = 6e-04
Identities = 17/42 (40%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
Query: 293 ETTCFRCGEPGHYANACPDTRPKCFNCNRMGHTAGQCRAPKT 334
+ C+ CG+ GH A C D+ C+NCN+ GH C P+T
Sbjct: 3 QKACYVCGKIGHLAEDC-DSERLCYNCNKPGHVQTDCTMPRT 43
Score = 39.7 bits (91), Expect = 0.014
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 296 CFRCGEPGHYANACPDTRPKCFNCNRMGHTAGQC 329
C+ CG+ GH + C + R C+NCN GH + C
Sbjct: 118 CYTCGQAGHMSRDCQNDR-LCYNCNETGHISKDC 150
Score = 37.7 bits (86), Expect = 0.053
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 293 ETTCFRCGEPGHYANACPDTRP----KCFNCNRMGHTAGQC 329
E C+ C +PGH C R +C+NC GH +C
Sbjct: 22 ERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSEC 62
Score = 35.4 bits (80), Expect = 0.26
Identities = 13/42 (30%), Positives = 22/42 (51%), Gaps = 4/42 (9%)
Query: 293 ETTCFRCGEPGHYANACPD----TRPKCFNCNRMGHTAGQCR 330
+ +C++CG P H A C + KC+ C + GH + C+
Sbjct: 91 KVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQ 132
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding
protein)
Length = 271
Score = 46.6 bits (109), Expect = 1e-04
Identities = 23/64 (35%), Positives = 28/64 (42%), Gaps = 10/64 (15%)
Query: 273 GSYRPMTGAAGGSGDQTLKKETTCFRCGEPGHYANACPDTRPK-------CFNCNRMGHT 325
G Y A GD+ + TTCFRCGE GH + CP+ CF C GH
Sbjct: 25 GHYARECPEADSKGDE---RSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHM 81
Query: 326 AGQC 329
+ C
Sbjct: 82 SRDC 85
Score = 44.3 bits (103), Expect = 6e-04
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 34/99 (34%)
Query: 265 PAGTGFTSGSY---RPMTGAAGG-SGDQTLKK----------------------ETTCFR 298
P+ G + G Y R +GA GG SGD+T K + TC++
Sbjct: 113 PSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYK 172
Query: 299 CGEPGHYANACPDTR--------PKCFNCNRMGHTAGQC 329
CG+ GH + CP+ + KC+ C GH + +C
Sbjct: 173 CGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSREC 211
Score = 42.7 bits (99), Expect = 0.002
Identities = 17/46 (36%), Positives = 23/46 (49%), Gaps = 7/46 (15%)
Query: 291 KKETTCFRCGEPGHYANACPDTRPK-------CFNCNRMGHTAGQC 329
+ T+C CG+ GHYA CP+ K CF C GH + +C
Sbjct: 13 ESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSREC 58
Score = 42.0 bits (97), Expect = 0.003
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 246 GSQNFQSREKFQSRGPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLKKETTCFRCGEPGHY 305
G + +RE ++ + T F G M+ TCFRCGE GH
Sbjct: 22 GKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHM 81
Query: 306 ANACPDTRP-------KCFNCNRMGHTAGQC 329
+ CP++ +C+ C + GH + C
Sbjct: 82 SRDCPNSAKPGAAKGFECYKCGQEGHLSRDC 112
Score = 40.0 bits (92), Expect = 0.011
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 14/70 (20%)
Query: 280 GAAGGSGDQTLKKETTCFRCGEPGHYANACPDTRP------KCFNCNRMGHTAGQCRAPK 333
G G+GD+ C++CGE GH + CP C+ C + GH + +C P+
Sbjct: 188 GGYSGAGDRK------CYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISREC--PE 239
Query: 334 TEPTVNTARG 343
+ +RG
Sbjct: 240 AGGSYGGSRG 249
Score = 39.3 bits (90), Expect = 0.018
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 18/64 (28%)
Query: 277 PMTGAAGGSGDQTLKKETTCFRCGEPGHYANACPDTRPK-----------CFNCNRMGHT 325
P G+ G SGD+ C++CG+PGH + CP+ C+ C GH
Sbjct: 212 PSAGSTG-SGDRA------CYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHI 264
Query: 326 AGQC 329
+ C
Sbjct: 265 SRDC 268
Score = 34.3 bits (77), Expect = 0.58
Identities = 24/87 (27%), Positives = 36/87 (40%), Gaps = 15/87 (17%)
Query: 231 NRRLNRAGTGGPMR-----SGSQNFQSREKFQSRGPYQRPAGTGFTSGSYRPMTGAAGGS 285
+R+ + G G M +GS R ++ P GSY G + G
Sbjct: 195 DRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSY----GGSRGG 250
Query: 286 GDQTLKKETTCFRCGEPGHYANACPDT 312
GD+T C++CGE GH + CP +
Sbjct: 251 GDRT------CYKCGEAGHISRDCPSS 271
Score = 33.1 bits (74), Expect = 1.3
Identities = 24/109 (22%), Positives = 34/109 (31%), Gaps = 23/109 (21%)
Query: 244 RSGSQNFQSREKFQSRGPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLKKETTCFRCGEPG 303
R G + SRE A T F G M+ S K C++CG+ G
Sbjct: 47 RCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEG 106
Query: 304 HYANACPDTR-----------------------PKCFNCNRMGHTAGQC 329
H + CP ++ C+ C GH + C
Sbjct: 107 HLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDC 155
>YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I
Length = 218
Score = 43.9 bits (102), Expect = 7e-04
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 296 CFRCGEPGHYANACPDTRP----KCFNCNRMGHTAGQC 329
CFRCG H NAC P KCF C+ GH +GQC
Sbjct: 102 CFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQC 139
Score = 33.5 bits (75), Expect = 0.99
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 292 KETTCFRCGEPGHYANACPDTRPK---CFNCNRMGHTAGQC 329
++ CF C + GH CP+ + CF C H+ C
Sbjct: 75 RDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNAC 115
>GAG_SIVAT (P05892) Gag polyprotein [Contains: Core protein p17;
Core protein p24; Core protein p15]
Length = 519
Score = 43.5 bits (101), Expect = 0.001
Identities = 17/46 (36%), Positives = 24/46 (51%), Gaps = 1/46 (2%)
Query: 286 GDQTLKKETTCFRCGEPGHYANACPDTR-PKCFNCNRMGHTAGQCR 330
G + + C+ CG+ GH CP+ R KC C ++GH A CR
Sbjct: 389 GPKRQRPPLRCYNCGKFGHMQRQCPEPRKTKCLKCGKLGHLAKDCR 434
>GAG_SIVAG (P27978) Gag polyprotein [Contains: Core protein p17;
Core protein p24; Core protein p15]
Length = 521
Score = 43.1 bits (100), Expect = 0.001
Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 32/100 (32%)
Query: 238 GTGGP------MRSGSQNFQSREKFQSRGPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLK 291
G GGP M QN QS+ Q G RP +
Sbjct: 365 GVGGPSYKAKVMAEMMQNMQSQNMMQQGGQRGRP-------------------------R 399
Query: 292 KETTCFRCGEPGHYANACPDTRP-KCFNCNRMGHTAGQCR 330
C+ CG+ GH CP+ R +C C + GH A CR
Sbjct: 400 PPVKCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAKDCR 439
>GAG_OMVVS (P16900) Gag polyprotein [Contains: Core protein p16;
Core protein p25; Core protein p14]
Length = 446
Score = 42.7 bits (99), Expect = 0.002
Identities = 25/68 (36%), Positives = 32/68 (46%), Gaps = 7/68 (10%)
Query: 286 GDQTLKKETTCFRCGEPGHYANACPDTRPKCFNCNRMGHTAGQCRAPKTEPTV---NTAR 342
G Q ++K C+ CG+PGH A C C +C + GH CR K PT N+ R
Sbjct: 379 GKQGVQK---CYYCGKPGHLARQCRQGII-CHHCGKRGHMQKDCRQKKGNPTSQQGNSRR 434
Query: 343 GKRPAAKA 350
G R A
Sbjct: 435 GPRVVPSA 442
>GAG_FIVT2 (P31821) Gag polyprotein [Contains: Core protein p15;
Major core protein p24; Nucleic acid binding protein
p10]
Length = 449
Score = 42.7 bits (99), Expect = 0.002
Identities = 17/42 (40%), Positives = 22/42 (51%), Gaps = 1/42 (2%)
Query: 288 QTLKKETTCFRCGEPGHYANACPDTRPKCFNCNRMGHTAGQC 329
QT CF C +PGH A C + + +C NC + GH A C
Sbjct: 369 QTKGPRLVCFNCKKPGHLARQCKEAK-RCNNCGKPGHLAANC 409
>GAG_SIVGB (P22381) Gag polyprotein [Contains: Core protein p17;
Core protein p24; Core protein p15]
Length = 502
Score = 41.6 bits (96), Expect = 0.004
Identities = 31/116 (26%), Positives = 41/116 (34%), Gaps = 39/116 (33%)
Query: 238 GTGGPMRSG-------------SQNFQSREKFQSRGPYQRPAGTGFTSGSYRPMTGAAGG 284
G GGP SQNF +++ RGP ++P G
Sbjct: 342 GVGGPQHKARLMAEMMRTVVGQSQNFV-QQRGPQRGPVRQPTG----------------- 383
Query: 285 SGDQTLKKETTCFRCGEPGHYANACPDTRPK-CFNCNRMGHTAGQCRAPKTEPTVN 339
++ CF C + GH A R K C+NC M H QC P + VN
Sbjct: 384 -------RKPICFNCNKEGHVARFFKAPRRKGCWNCGAMDHQKAQCPKPAQQQRVN 432
Score = 32.0 bits (71), Expect = 2.9
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 313 RPKCFNCNRMGHTAGQCRAPKTEPTVN-------TARGKRPAAKARV 352
+P CFNCN+ GH A +AP+ + N A+ +PA + RV
Sbjct: 385 KPICFNCNKEGHVARFFKAPRRKGCWNCGAMDHQKAQCPKPAQQQRV 431
>GAG_FIVSD (P19027) Gag polyprotein [Contains: Core protein p15;
Major core protein p24; Nucleic acid binding protein
p10]
Length = 450
Score = 41.6 bits (96), Expect = 0.004
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 296 CFRCGEPGHYANACPDTRPKCFNCNRMGHTAGQC 329
CF C +PGH A C D + KC C + GH A +C
Sbjct: 377 CFNCKKPGHLARQCRDVK-KCNKCGKPGHLAAKC 409
Score = 32.3 bits (72), Expect = 2.2
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 15/61 (24%)
Query: 314 PKCFNCNRMGHTAGQCRAPKTEPTVNTARGKRPAAKARVYTMDGERAEEFARGERKNDGN 373
P CFNC + GH A QCR K K G A + +G ++N GN
Sbjct: 375 PVCFNCKKPGHLARQCRDVK---------------KCNKCGKPGHLAAKCWQGGKRNSGN 419
Query: 374 F 374
+
Sbjct: 420 W 420
>GRP2_NICSY (P27484) Glycine-rich protein 2
Length = 214
Score = 41.2 bits (95), Expect = 0.005
Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 22/110 (20%)
Query: 238 GTGGPMRSGSQNFQSREK-FQSRGPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLKKETTC 296
G GG R GS+ + + + G Y + G G Y G GG G + C
Sbjct: 104 GYGGGGRGGSRGYGGGDGGYGGGGGYGGGSRYGGGGGGY----GGGGGYGGGGSGGGSGC 159
Query: 297 FRCGEPGHYANACPDT-----------------RPKCFNCNRMGHTAGQC 329
F+CGE GH+A C + C+ C GH A +C
Sbjct: 160 FKCGESGHFARDCSQSGGGGGGGRFGGGGGGGGGGGCYKCGEDGHFAREC 209
>GAG_HV1A2 (P03349) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 501
Score = 41.2 bits (95), Expect = 0.005
Identities = 32/115 (27%), Positives = 42/115 (35%), Gaps = 23/115 (20%)
Query: 238 GTGGPMRSGSQNFQSREKFQSRGPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLKKETTCF 297
G GGP ++R ++ PA G++R +K CF
Sbjct: 353 GVGGP------GHKARVLAEAMSQVTNPANIMMQRGNFRNQ------------RKTVKCF 394
Query: 298 RCGEPGHYANACPDTRPK-CFNCNRMGHTAGQCRAPKTEPTVNTARGKRPAAKAR 351
CG+ GH A C R K C+ C R GH C TE N P+ K R
Sbjct: 395 NCGKEGHIAKNCRAPRKKGCWRCGREGHQMKDC----TERQANFLGKIWPSYKGR 445
Score = 35.4 bits (80), Expect = 0.26
Identities = 21/62 (33%), Positives = 24/62 (37%), Gaps = 22/62 (35%)
Query: 294 TTCFRCGEPGHYANACPD-----TRP-----------------KCFNCNRMGHTAGQCRA 331
T C G PGH A + T P KCFNC + GH A CRA
Sbjct: 349 TACQGVGGPGHKARVLAEAMSQVTNPANIMMQRGNFRNQRKTVKCFNCGKEGHIAKNCRA 408
Query: 332 PK 333
P+
Sbjct: 409 PR 410
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,308,368
Number of Sequences: 164201
Number of extensions: 2061513
Number of successful extensions: 6112
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 5709
Number of HSP's gapped (non-prelim): 292
length of query: 404
length of database: 59,974,054
effective HSP length: 113
effective length of query: 291
effective length of database: 41,419,341
effective search space: 12053028231
effective search space used: 12053028231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0067b.6