BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0067a.8
         (611 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310...    75  7e-13
NPA3_MOUSE (Q9QZQ0) Neuronal PAS domain protein 3 (Neuronal PAS3...    32  6.3
NADB_STRCO (Q9X8N8) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Q...    31  8.3

>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
           (ORF154)
          Length = 154

 Score = 74.7 bits (182), Expect = 7e-13
 Identities = 43/139 (30%), Positives = 75/139 (53%), Gaps = 2/139 (1%)

Query: 238 VLFLSYFKIPVGVEKECQRIMWNFLWGGSPEERRIAWVSWERICKPK-DFGGLGLKDWLP 296
           V  +S F++   + K+    M  F W     +R+I+WV+W+++CK K D GGLG +D   
Sbjct: 5   VYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGW 64

Query: 297 FNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQPGRIIE-SPWWRDVQAARVDMGGINWFEA 355
           FN A+L K  +R +   ++L  ++++++Y     ++E S   R   A R  + G      
Sbjct: 65  FNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSR 124

Query: 356 GLAKVVGNGDSTQFWLEDW 374
           GL + +G+G  T+ WL+ W
Sbjct: 125 GLLRTIGDGIHTKVWLDRW 143


>NPA3_MOUSE (Q9QZQ0) Neuronal PAS domain protein 3 (Neuronal PAS3)
           (Member of PAS protein 6) (MOP6)
          Length = 925

 Score = 31.6 bits (70), Expect = 6.3
 Identities = 14/38 (36%), Positives = 20/38 (51%)

Query: 417 RNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWPPNSE 454
           R LS+     V K+  E+ E +   N S +W +PPN E
Sbjct: 639 RLLSSPHSASVLKIKTEIAEPINFDNESSIWNYPPNRE 676


>NADB_STRCO (Q9X8N8) L-aspartate oxidase (EC 1.4.3.16) (LASPO)
           (Quinolinate synthetase B)
          Length = 580

 Score = 31.2 bits (69), Expect = 8.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 340 VQAARVDMGGINWFEAGLAKVVGNGDSTQFWLED 373
           V  AR+D G   W + G+A  +G GD+ +  L+D
Sbjct: 47  VTKARLDDGSTRWAQGGVAAALGEGDTPEQHLDD 80


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.336    0.146    0.539 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,779,049
Number of Sequences: 164201
Number of extensions: 3258047
Number of successful extensions: 8225
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8220
Number of HSP's gapped (non-prelim): 3
length of query: 611
length of database: 59,974,054
effective HSP length: 116
effective length of query: 495
effective length of database: 40,926,738
effective search space: 20258735310
effective search space used: 20258735310
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 69 (31.2 bits)