BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0067a.6
(713 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TPR_HUMAN (P12270) Nucleoprotein TPR 41 0.010
K21A_MOUSE (Q9QXL2) Kinesin family member 21A 41 0.010
RGP1_MOUSE (P46061) Ran GTPase-activating protein 1 41 0.013
RGP1_XENLA (O13066) Ran GTPase-activating protein 1 40 0.021
HIBN_XENLA (P06180) Histone-binding protein N1/N2 40 0.028
RGP1_HUMAN (P46060) Ran GTPase-activating protein 1 39 0.036
CT06_HUMAN (Q9H501) Hypothetical protein C20orf6 39 0.036
RRB1_HUMAN (Q9P2E9) Ribosome-binding protein 1 (Ribosome recepto... 39 0.048
VAT_CAMVC (P03549) Aphid transmission protein (Protein 2) 39 0.062
SMC2_MOUSE (Q8CG48) Structural maintenance of chromosome 2-like ... 39 0.062
SSP5_STRGN (P16952) Agglutinin receptor precursor (SSP-5) 38 0.081
THYA_RAT (P06302) Prothymosin alpha 38 0.11
THYA_MOUSE (P26350) Prothymosin alpha 38 0.11
DAXX_MOUSE (O35613) Death domain-associated protein 6 (Daxx) 38 0.11
TPM2_BIOGL (P43689) Tropomyosin 2 (TMII) 37 0.14
TPM1_BRARE (P13104) Tropomyosin 1 alpha chain (Alpha-tropomyosin) 37 0.14
YVQH_BACSU (O32201) Hypothetical protein yvqH 37 0.18
SMC4_XENLA (P50532) Structural maintenance of chromosome 4 (Chro... 37 0.18
SMC1_YEAST (P32908) Structural maintenance of chromosome 1 (DA-b... 37 0.18
NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3 37 0.18
>TPR_HUMAN (P12270) Nucleoprotein TPR
Length = 2349
Score = 41.2 bits (95), Expect = 0.010
Identities = 20/56 (35%), Positives = 32/56 (56%), Gaps = 4/56 (7%)
Query: 651 KDGQVIGDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQGND 706
+DGQ GDD + +D +DE E EE+D +D ++ ++ E N G++ GND
Sbjct: 1934 QDGQGKGDDVIVIDS----DDEEEDEEDDDDDEDDTGMGDEGEDSNEGTGSADGND 1985
Score = 31.2 bits (69), Expect = 9.9
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 522 VKELLSAKNRYEKKAVDYKAAYERAKADAETANKNLKAAEEKCAKLTDDLAASDLLLQKT 581
++E + + +K YK YE KA + E A+ + D + +Q+
Sbjct: 1424 IQEKVKTITQVKKIGRRYKTQYEELKAQQDKVM-------ETSAQSSGDHQEQHVSVQEM 1476
Query: 582 KSLKETINDKHTAAQAKCQKLEKKYERLNASI 613
+ LKET+N A+ K + LE + E L ++
Sbjct: 1477 QELKETLNQ----AETKSKSLESQVENLQKTL 1504
>K21A_MOUSE (Q9QXL2) Kinesin family member 21A
Length = 1672
Score = 41.2 bits (95), Expect = 0.010
Identities = 44/178 (24%), Positives = 77/178 (42%), Gaps = 6/178 (3%)
Query: 523 KELLSAKNRYEKKAVDYKAAYERAKADAETANKNLKAAEEKCAKLTDDLAASDLLLQKTK 582
+E+ + + Y K+ D +A ++A E KNL A + + A S +L K
Sbjct: 473 EEISNMIHSYIKEIEDLRAKLLESEAVNENLRKNLTRATARSPYFSASSAFSPTILSSDK 532
Query: 583 SLKETINDKHTAAQAKCQKLEKKYERLNA-SILGRASLQFA-QGFLAAKEQIRMFEPGFD 640
E I+ + +K +KK +RL GR A + A +Q + E G
Sbjct: 533 ETIEIIDLAKKDLEKLKRKEKKKKKRLQKLEESGREERSVAGKDDNADTDQEKKEEKGVS 592
Query: 641 LSRIGYLKDIKDGQVIGDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQ 698
L D+++ Q + D + D + DE E ++ +GE+ ++++ E EK N Q
Sbjct: 593 EKENNEL-DVEENQEVSDHE---DEEEEEEDEEEEDDIEGEESSDESDSESDEKANYQ 646
>RGP1_MOUSE (P46061) Ran GTPase-activating protein 1
Length = 589
Score = 40.8 bits (94), Expect = 0.013
Identities = 28/109 (25%), Positives = 55/109 (49%), Gaps = 15/109 (13%)
Query: 595 AQAKCQKLEKKYERLNASILGRASLQFAQGFLAAKEQIRMFEPGFDLSRIGYLKDIKDGQ 654
A+A K E + LN + LG EQ++ F+++++ L + D +
Sbjct: 314 AEAVADKAELEKLDLNGNALGEEGC----------EQLQEVMDSFNMAKV--LASLSDDE 361
Query: 655 VIGDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQ 703
+D+ + +DE E +EED ED +E+ +++++E+E PQ G+ +
Sbjct: 362 GEDEDEEEEG---EEDDEEEEDEEDEEDDDEEEEEQEEEEEPPQRGSGE 407
>RGP1_XENLA (O13066) Ran GTPase-activating protein 1
Length = 580
Score = 40.0 bits (92), Expect = 0.021
Identities = 39/152 (25%), Positives = 66/152 (42%), Gaps = 37/152 (24%)
Query: 559 AAEEKCAKLTD-DLAASDLLLQKTKSLKETINDKHTAAQAKCQKLEKKYERLNASILGRA 617
A +E KL D +L+ ++ SL E++ DK + +KL+ LN + LG
Sbjct: 287 ALKEGLHKLKDLNLSYCEIKADAAVSLAESVEDK-----SDLEKLD-----LNGNCLGEE 336
Query: 618 SLQFAQGFLAAKEQIRMFEPGFDLSRIGYLKDIKDGQVIGDDDVSLDLLPQFNDESEPEE 677
+ Q L E I M + +G L D +D D+ + +E
Sbjct: 337 GCEQVQEIL---ESINM------ANILGSLSDDED-----------------EDDDDDDE 370
Query: 678 EDGEDRNEQNKDEDQEKENPQVGTSQGNDVNN 709
+D +D +++N DE+ E+E +V +G D N
Sbjct: 371 DDDDDEDDENDDEEVEEEEEEVEEEEGGDNEN 402
>HIBN_XENLA (P06180) Histone-binding protein N1/N2
Length = 589
Score = 39.7 bits (91), Expect = 0.028
Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 33/204 (16%)
Query: 532 YEKKAVDYKAAYERAKADAE----------TANKNLKAAEEKCAKLTDDL----AASDLL 577
Y+ A D +A + ++++A+ A++ +K +++ K+TDDL A+ D+
Sbjct: 140 YDAMAEDQRAPDDTSESEAKGKPEGDSKDKEADEKMKNGQKETEKVTDDLKIDSASRDVP 199
Query: 578 LQKT-KSLKETINDKHTAAQAKCQKLEKKYERLNASILGRASLQFAQGFLAAKEQIRMFE 636
+ K+ K D T + K E K E L + ++ AKE
Sbjct: 200 MDKSGKGEPPESKDAETLVEQK----ESKPETLKEKSIETKEKDLSKEKTDAKETANQSP 255
Query: 637 PGFDLSRIGYLKDIKDGQVIGDDDVSLDLLPQFNDESEP-------EEEDGEDRNEQNKD 689
+++ + K + S + P N+ ++P EEE+GED +E+N+D
Sbjct: 256 DSTEVA------EEKMDSEASESKESTSIPPTENEANKPDDPEKMEEEEEGED-SEENED 308
Query: 690 EDQEKENPQVGTSQGNDVNNDNVA 713
+E E + ++ DV N +A
Sbjct: 309 GTEENEGTEEKETEEEDVGNLQLA 332
>RGP1_HUMAN (P46060) Ran GTPase-activating protein 1
Length = 587
Score = 39.3 bits (90), Expect = 0.036
Identities = 27/104 (25%), Positives = 51/104 (48%), Gaps = 18/104 (17%)
Query: 595 AQAKCQKLEKKYERLNASILGRASLQFAQGFLAAKEQIRMFEPGFDLSRIGYLKDIKDGQ 654
A+A K E + LN + LG EQ++ GF+++++ L + D +
Sbjct: 314 AEAMADKAELEKLDLNGNTLGEEGC----------EQLQEVLEGFNMAKV--LASLSDDE 361
Query: 655 VIGDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQ 698
+++ + +E E EEE+ ED E+ ++E++E+E PQ
Sbjct: 362 DEEEEEEGEE------EEEEAEEEEEEDEEEEEEEEEEEEEEPQ 399
>CT06_HUMAN (Q9H501) Hypothetical protein C20orf6
Length = 851
Score = 39.3 bits (90), Expect = 0.036
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 547 KADAETANKNLKAAEEKCAKLTDDLAASDLLLQKTKSLKETINDKHTAAQAKCQKLEKKY 606
K E KN K + TD L +K ++L ++ + + +C K ++
Sbjct: 156 KDSKEFTQKNKKEKKNIVQHTTDSS-----LEEKQRTLDSGTSEIVKSPRIECSKTRREM 210
Query: 607 ERLNASILGRASLQF---AQGFLAAKEQIRMFEPGFDLSRIGYLKDIKD-----GQVIGD 658
+ + I+ R S + G + K+ + E +S IG ++ ++ G+ GD
Sbjct: 211 QSVVQLIMTRDSDGYENSTDGEMCDKDALE--EDSESVSEIGSDEESENEITSVGRASGD 268
Query: 659 DDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQGND 706
DD S D + DE E E+ED ED ++ + D + + TS ++
Sbjct: 269 DDGSEDDEEEDEDEEEDEDEDSEDDDKSDSGPDLARGKGNIETSSEDE 316
>RRB1_HUMAN (Q9P2E9) Ribosome-binding protein 1 (Ribosome receptor
protein) (180 kDa ribosome receptor homolog) (ES/130
related protein)
Length = 1410
Score = 38.9 bits (89), Expect = 0.048
Identities = 37/162 (22%), Positives = 67/162 (40%), Gaps = 10/162 (6%)
Query: 518 MAQCVKELLSAKNRYEKKAVDYKAAYERAKADAETANKNLKAAEEKCAKLTDDLAASDLL 577
+A+ L + E++ ++A A+ + + + +K EE KL +L +SD +
Sbjct: 1135 LAETEGMLRDLQKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQV 1194
Query: 578 LQKTKSLKETINDKHTAAQAKCQKLEKKYERLNASILGRASLQFAQGFLAAKEQIRMFEP 637
+ T L+ + AA A+CQ K+ L +L S A A K+ +
Sbjct: 1195 REHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALV 1254
Query: 638 GFDLSRIGYLKDIKDGQVIGDDDVSLDLLPQFNDESEPEEED 679
LS + ++DG + G P + E+ P E+D
Sbjct: 1255 RQQLSEM--KSHVEDGDIAG--------APASSPEAPPAEQD 1286
>VAT_CAMVC (P03549) Aphid transmission protein (Protein 2)
Length = 159
Score = 38.5 bits (88), Expect = 0.062
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 527 SAKNRYEKKAVDYKAAYERAKADAETANKNLKAAEEKCAKLTDDLAASDLLLQKTKSLKE 586
+AKN ++ + VDY + + K+ E N +K E L + + L ++ K LKE
Sbjct: 86 TAKNIFKSRGVDYSSQLKEVKSLLEAQNTRIKNLENAIQSLDNKIEPEPLTKEEVKELKE 145
Query: 587 TIN 589
+IN
Sbjct: 146 SIN 148
>SMC2_MOUSE (Q8CG48) Structural maintenance of chromosome 2-like 1
protein (Chromosome-associated protein E) (XCAP-E
homolog) (FGF-inducible protein 16)
Length = 1191
Score = 38.5 bits (88), Expect = 0.062
Identities = 57/266 (21%), Positives = 109/266 (40%), Gaps = 29/266 (10%)
Query: 356 IKMKEYLAQSAAMVKKRAAEAEQ--KKKNEGTSGSDNVRDPKRQKTSSATGGRPLHQSTQ 413
+ ++E L+++ +K E E+ ++K++ T G + + + ++ +Q
Sbjct: 261 VNLQEVLSENEKKIKALNCEIEELERRKDKETGGK------LKSLEDACAEAQRVNTKSQ 314
Query: 414 STLDPKDR--PAEKKKGHDNVPPTQPDSSALI--NRPPTPFTQA--GPSSAIGGETPPLL 467
S D K + +E+ K + DS AL + T G A + L
Sbjct: 315 SAFDLKKKNLASEETKRKELQNSMAEDSKALAAKEKEVKKITDGLHGLQEA-SNKDAEAL 373
Query: 468 SLSDPHFNGLDFMTRTFDNRLHKNVSGQGPPNIASVAIHHALSAASTVAGMAQCVKELLS 527
+ + HFN + + ++ ++GQ +A + +S A T A AQ +L
Sbjct: 374 AAAQQHFNAVSAGLSSNEDGAEATLAGQ------MIACKNDISKAQTEAKQAQM--KLKH 425
Query: 528 AKNRYEKKAVDYK---AAYERAKADAETANKNLKAAEEKCAKLTDDLAASDLLLQKTKSL 584
A+ + K + K + Y++ + E K + E + KL + + LL+K + L
Sbjct: 426 AQQELKSKQAEVKKMDSGYKKDQDAFEAVKKAKEKLETEMKKLNYEENKEEKLLEKHRQL 485
Query: 585 KETIND---KHTAAQAKCQKLEKKYE 607
IN+ KH A AK L+ Y+
Sbjct: 486 SRDINNLKGKHEALLAKFPNLQFAYK 511
>SSP5_STRGN (P16952) Agglutinin receptor precursor (SSP-5)
Length = 1500
Score = 38.1 bits (87), Expect = 0.081
Identities = 35/132 (26%), Positives = 60/132 (44%), Gaps = 10/132 (7%)
Query: 485 DNRLHKNVSGQGPPNIASVAIHHALSAASTVAGMAQCVKELLSAKNRYEKKAVDYK---A 541
D++ K++ + + +A + A A +AQ K+L + K E DY+ +
Sbjct: 174 DDKYQKDLKSH-QEEVEKINTANATAKAEYEAKLAQYQKDLATVKKANEDSQQDYQNKLS 232
Query: 542 AYERAKADAETANKNLKAAEEKCAKLTDDLAASDLLLQKTKSLKETINDKHTAAQAKCQK 601
AY+ A + AN K A EK K ++ A ++ L K E I ++ A+A +
Sbjct: 233 AYQTELARVQKANAEAKEAYEKAVK--ENTAKNEAL----KVENEAIKQRNETAKATYEA 286
Query: 602 LEKKYERLNASI 613
K+YE A+I
Sbjct: 287 AMKQYEADLAAI 298
Score = 32.0 bits (71), Expect = 5.8
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 17/129 (13%)
Query: 499 NIASVAIHHALSAASTVAGMAQCVKELLSAKNRYEKKAVDYKAAYERAKADAETANKNLK 558
++A+V +A + A A +A EL R +K D KA YE+A D + N +K
Sbjct: 376 DLAAVKQANATNEADYQAKLAAYQTELA----RVQKANADAKATYEKAVEDNKAKNAAIK 431
Query: 559 AAEEKCAKLTDDLAASDLLLQKTKSLKETINDKHTAAQAKCQKLEKKYERLNASILGRAS 618
A E+ + Q+ K K +A K +K++ A++ S
Sbjct: 432 AENEE-------------IKQRNAVAKTDYEAKLAKYEADLAKYKKEFAAYTAALAEAES 478
Query: 619 LQFAQGFLA 627
+ G+L+
Sbjct: 479 KKKQDGYLS 487
>THYA_RAT (P06302) Prothymosin alpha
Length = 111
Score = 37.7 bits (86), Expect = 0.11
Identities = 27/84 (32%), Positives = 42/84 (49%), Gaps = 4/84 (4%)
Query: 629 KEQIRMFEPGFDLSRIGYLKDIKDGQVIGDDDVSLDLLPQFNDESEPEEEDGEDRNEQNK 688
KE + E G D G ++ ++G+ D++V + +E E EE DGE E++
Sbjct: 20 KEVVEEAENGRDAPANGNAQNEENGEQEADNEVDEEEEEGGEEEEEEEEGDGE---EEDG 76
Query: 689 DEDQEKENPQVGTSQGNDVNNDNV 712
DED+E E P G D +D+V
Sbjct: 77 DEDEEAEAP-TGKRVAEDDEDDDV 99
>THYA_MOUSE (P26350) Prothymosin alpha
Length = 110
Score = 37.7 bits (86), Expect = 0.11
Identities = 27/84 (32%), Positives = 42/84 (49%), Gaps = 4/84 (4%)
Query: 629 KEQIRMFEPGFDLSRIGYLKDIKDGQVIGDDDVSLDLLPQFNDESEPEEEDGEDRNEQNK 688
KE + E G D G ++ ++G+ D++V + +E E EE DGE E++
Sbjct: 20 KEVVEEAENGRDAPANGNAQNEENGEQEADNEVDEEEEEGGEEEEEEEEGDGE---EEDG 76
Query: 689 DEDQEKENPQVGTSQGNDVNNDNV 712
DED+E E P G D +D+V
Sbjct: 77 DEDEEAEAP-TGKRVAEDDEDDDV 99
>DAXX_MOUSE (O35613) Death domain-associated protein 6 (Daxx)
Length = 739
Score = 37.7 bits (86), Expect = 0.11
Identities = 21/49 (42%), Positives = 29/49 (58%), Gaps = 2/49 (4%)
Query: 658 DDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQGND 706
DDD D + N+ESE EEE+ E+ E +DED++ E Q+ QG D
Sbjct: 443 DDDDDDDDDDEDNEESEEEEEEEEEEKEATEDEDEDLE--QLQEDQGGD 489
>TPM2_BIOGL (P43689) Tropomyosin 2 (TMII)
Length = 284
Score = 37.4 bits (85), Expect = 0.14
Identities = 28/110 (25%), Positives = 55/110 (49%), Gaps = 10/110 (9%)
Query: 518 MAQCVKELLSAKNRYEKKAVDYKAAYERAKADAETANKN-------LKAAEEKCAKLTDD 570
M Q V+++ KN+ E++ + + + + D +TAN+ L+A+E+ A+L D
Sbjct: 25 MEQKVRDVEETKNKLEEEFNNLQKKFSNLQNDFDTANEGLTEAQTKLEASEKHVAELESD 84
Query: 571 LAASDLLLQKTKSLKETINDKHTAAQAKCQKLEKKYERLNASILGRASLQ 620
A L ++ + L+E + Q+ +KLE+ + + S GR L+
Sbjct: 85 TAG---LNRRIQLLEEDLERSEERLQSATEKLEEASKAADESERGRKVLE 131
>TPM1_BRARE (P13104) Tropomyosin 1 alpha chain (Alpha-tropomyosin)
Length = 284
Score = 37.4 bits (85), Expect = 0.14
Identities = 26/73 (35%), Positives = 36/73 (48%)
Query: 533 EKKAVDYKAAYERAKADAETANKNLKAAEEKCAKLTDDLAASDLLLQKTKSLKETINDKH 592
+KK K E A AE A + KAAEE+ +L DDL A L+ T+ + ++
Sbjct: 5 KKKMQMLKLDKENALDRAEQAETDKKAAEERSKQLEDDLVALQKKLKATEDELDKYSEAL 64
Query: 593 TAAQAKCQKLEKK 605
AQ K + EKK
Sbjct: 65 KDAQEKLELAEKK 77
Score = 31.2 bits (69), Expect = 9.9
Identities = 43/181 (23%), Positives = 79/181 (42%), Gaps = 15/181 (8%)
Query: 527 SAKNRYEKKAVDYKAAYERAKA---DAETANKNLKAAEEKCAKLTDDLAAS----DLLLQ 579
+A +R E+ D KAA ER+K D K LKA E++ K ++ L + +L +
Sbjct: 17 NALDRAEQAETDKKAAEERSKQLEDDLVALQKKLKATEDELDKYSEALKDAQEKLELAEK 76
Query: 580 KTKSLKETINDKHTAAQAKCQKLEKKYERLNASI-----LGRASLQFAQGFLAAKEQIRM 634
K + + + Q ++L++ ERL ++ +A+ + +G + +
Sbjct: 77 KATDAEGDVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALK 136
Query: 635 FEPGFDLSRIGYLKDIKDGQVIGDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEK 694
E +L I LK+ K + + D + + + E E E E+R E N+ + E
Sbjct: 137 DEEKMELQEI-QLKEAK--HIAEEADRKYEEVARKLVIVEGELERTEERAELNEGKCSEL 193
Query: 695 E 695
E
Sbjct: 194 E 194
>YVQH_BACSU (O32201) Hypothetical protein yvqH
Length = 225
Score = 37.0 bits (84), Expect = 0.18
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 516 AGMAQCVKELLSAKNRYEKKAVDYKAAYERAKADAETANKNLKAAEEKCAKLTDDLAASD 575
AG + K+ L+ E KA ++KA+YE+A + + A L + LAA +
Sbjct: 80 AGEEELAKKALTEMKYLEGKAAEHKASYEQANS--------------QLADLKEQLAALE 125
Query: 576 LLLQKTKSLKETINDKHTAAQAKCQKLEKKYERLNASILGRASLQF---AQGFLAAKEQI 632
LQ K K+ + + AA+AK + + ++++++ R L+ +
Sbjct: 126 TKLQDVKDKKQALIARANAAKAK-EHMNTTFDKIDSESAYREFLRIENRIEEMEIRANYS 184
Query: 633 RMFEPGFDLSRIGYLKDIK 651
+ E G +L+R + D++
Sbjct: 185 KSAEAGTELTRKEFADDVE 203
>SMC4_XENLA (P50532) Structural maintenance of chromosome 4
(Chromosome-associated protein C) (Chromosome assembly
protein XCAP-C)
Length = 1290
Score = 37.0 bits (84), Expect = 0.18
Identities = 17/74 (22%), Positives = 41/74 (54%)
Query: 530 NRYEKKAVDYKAAYERAKADAETANKNLKAAEEKCAKLTDDLAASDLLLQKTKSLKETIN 589
++ K+ + +A +A+ +TA++NLK +EE A+ ++ A+D +++ + +
Sbjct: 901 DKVTKEIDECASAITKAQVSIKTADRNLKKSEEAVARTEKEIVANDKSIEELTEDLKKLE 960
Query: 590 DKHTAAQAKCQKLE 603
+K T +C++ E
Sbjct: 961 EKATTVMNECKEAE 974
>SMC1_YEAST (P32908) Structural maintenance of chromosome 1 (DA-box
protein SMC1)
Length = 1225
Score = 37.0 bits (84), Expect = 0.18
Identities = 33/162 (20%), Positives = 75/162 (45%), Gaps = 14/162 (8%)
Query: 518 MAQCVKELLSAKNRYE---KKAVDYKAAYERAKADAETANKNLKAAEEKCAKLTDDLAAS 574
+ Q K++L+ +N+ + + + YE+A+ D E A +K+ EE+ + + +
Sbjct: 818 LQQLQKQILTVENKLQFETDRLSTTQRRYEKAQKDLENAQVEMKSLEEQEYAIEMKIGSI 877
Query: 575 DLLLQKTKSLKETINDKHTAAQAKCQKLEKKYERLNASILGRASLQFAQGFLAAKEQIRM 634
+ L++ K+ + + K Q++ E E +N+++ Q ++ I+
Sbjct: 878 ESKLEEHKNHLDELQKKFVTKQSELNSSEDILEDMNSNL---------QVLKRERDGIKE 928
Query: 635 FEPGFDLSRIGYLKD--IKDGQVIGDDDVSLDLLPQFNDESE 674
FDL R+ LK+ I + + + ++D LP + ++E
Sbjct: 929 DIEKFDLERVTALKNCKISNINIPISSETTIDDLPISSTDNE 970
>NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3
Length = 802
Score = 37.0 bits (84), Expect = 0.18
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 657 GDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQGNDVNNDNVA 713
G+DD D N+E E EEED +D ++ + D+++E+E + + + V +D+ A
Sbjct: 99 GNDDDDDD-----NEEEEEEEEDDDDDDDDDDDDEEEEEEEEEEGNDNSSVGSDSAA 150
Score = 33.1 bits (74), Expect = 2.6
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 668 QFNDESEPEEEDGEDRNEQN-----KDEDQEKENPQVGTSQGNDVNND 710
+ D ++ EEED E++ E+N +E++E+E+ Q G + +D +N+
Sbjct: 61 ELEDVNDEEEEDKEEKGEENGEVINTEEEEEEEHQQKGGNDDDDDDNE 108
Score = 31.6 bits (70), Expect = 7.6
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 658 DDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQGNDVNND 710
DD + D P+ E+E EEE+ E ++ ++++E++ + G G +N +
Sbjct: 36 DDGIEFDA-PEEEREAEREEENEEQHELEDVNDEEEEDKEEKGEENGEVINTE 87
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.314 0.131 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,494,415
Number of Sequences: 164201
Number of extensions: 3948295
Number of successful extensions: 17431
Number of sequences better than 10.0: 321
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 193
Number of HSP's that attempted gapping in prelim test: 15531
Number of HSP's gapped (non-prelim): 1286
length of query: 713
length of database: 59,974,054
effective HSP length: 117
effective length of query: 596
effective length of database: 40,762,537
effective search space: 24294472052
effective search space used: 24294472052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 69 (31.2 bits)
Lotus: description of TM0067a.6