BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0067a.13
(212 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SCR1_SCHPO (O14335) DNA-binding protein scr1 39 0.009
ATXL_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain prote... 39 0.012
BCCP_ARATH (Q42533) Biotin carboxyl carrier protein of acetyl-Co... 37 0.034
UN89_CAEEL (O01761) Muscle M-line assembly protein unc-89 (Uncoo... 37 0.044
CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48) 36 0.057
MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia p... 36 0.075
NKCR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer... 35 0.13
CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48) 35 0.13
PCLO_RAT (Q9JKS6) Piccolo protein (Multidomain presynaptic cytom... 34 0.22
KML2_HUMAN (Q9H1R3) Myosin light chain kinase 2, skeletal/cardia... 34 0.22
PHFF_HUMAN (Q9NQC1) PHD finger protein 15 34 0.28
CRK7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinase... 34 0.28
PER3_HUMAN (P56645) Period circadian protein 3 (hPER3) 33 0.37
K6B2_MOUSE (Q9Z1M4) Ribosomal protein S6 kinase beta 2 (EC 2.7.1... 33 0.37
WNK4_MOUSE (Q80UE6) Serine/threonine-protein kinase WNK4 (EC 2.7... 33 0.49
UBP8_MOUSE (Q80U87) Ubiquitin carboxyl-terminal hydrolase 8 (EC ... 33 0.49
PCLO_CHICK (Q9PU36) Piccolo protein (Aczonin) (Fragment) 33 0.49
NKCR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer... 33 0.49
KCH2_RAT (O08962) Potassium voltage-gated channel subfamily H me... 33 0.49
GP10_DICDI (Q06885) Glycoprotein gp100 precursor (P29F8) 33 0.49
>SCR1_SCHPO (O14335) DNA-binding protein scr1
Length = 565
Score = 38.9 bits (89), Expect = 0.009
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 1 MSEKPTSRDQYGPPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQI 60
M KP S+ GP SS + + SS V+V+ L PP PS+ TKS+ + S
Sbjct: 493 MPHKPASQSNVGPVRISSNRRSRKFSSSSR-VSVSNLLAGSPPSPSSSTKSA---SSSYS 548
Query: 61 VQSPAKSKSPLVPLS 75
+PA S PL P++
Sbjct: 549 TTTPAFSIGPLTPMT 563
>ATXL_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)
(Ataxin-2 related protein)
Length = 1075
Score = 38.5 bits (88), Expect = 0.012
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 14/100 (14%)
Query: 2 SEKPTSRDQYGPPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQIV 61
S +P+ PP R P S+AP ++ P G + PT S+ P S +
Sbjct: 426 SNRPSGETSVPPPPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSVS 485
Query: 62 Q------SPAKSKSPLVPLSNKYSILDYQNTISSKTPGKT 95
SPA K L P K +S+K PG+T
Sbjct: 486 DPGVGSISPASPKISLAPTDVK--------ELSTKEPGRT 517
>BCCP_ARATH (Q42533) Biotin carboxyl carrier protein of acetyl-CoA
carboxylase, chloroplast precursor (BCCP)
Length = 280
Score = 37.0 bits (84), Expect = 0.034
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 10 QYGPPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSS----QRPTVSQIVQSPA 65
Q P + + P + ++AP TP ++ PP P TP KSS + P +SPA
Sbjct: 161 QPNQPSYAQQMAPPAAPAAAAPAPSTPA-SLPPPSPPTPAKSSLPTVKSPMAGTFYRSPA 219
Query: 66 KSKSPLVPLSNK 77
+ P + + +K
Sbjct: 220 PGEPPFIKVGDK 231
>UN89_CAEEL (O01761) Muscle M-line assembly protein unc-89
(Uncoordinated protein 89)
Length = 6632
Score = 36.6 bits (83), Expect = 0.044
Identities = 33/121 (27%), Positives = 57/121 (46%), Gaps = 10/121 (8%)
Query: 3 EKPTSRDQYGPPLGSSRKLPSSIT----GSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVS 58
EK + ++ P K PSS T S+P T + + P +PTK + P
Sbjct: 1419 EKSPAAEEVKSPT-KKEKSPSSPTKKEKSPSSPTKKTGDEVKEKSPPKSPTKKEKSPEKP 1477
Query: 59 QIVQSPA-KSKSP----LVPLSNKYSILDYQNTISSKTPGKTEQYEYQEKPECLPSVMIE 113
+ V+SP K KSP +V +S++ +I + T++++ ++E+ K E P + E
Sbjct: 1478 EDVKSPVKKEKSPDATNIVEVSSETTIEKTETTMTTEMTHESEESRTSVKKEKTPEKVDE 1537
Query: 114 K 114
K
Sbjct: 1538 K 1538
Score = 33.5 bits (75), Expect = 0.37
Identities = 22/79 (27%), Positives = 37/79 (45%), Gaps = 6/79 (7%)
Query: 37 LKTIKPPGPSTPTKSSQRPTVSQIVQSPAKSKSPLVPLSNKYS----ILDYQNTISSKTP 92
+K+ K P++PTK + P ++ K KSP P + S + + K+P
Sbjct: 1404 VKSPKEKSPASPTKKEKSPAAEEVKSPTKKEKSPSSPTKKEKSPSSPTKKTGDEVKEKSP 1463
Query: 93 GK--TEQYEYQEKPECLPS 109
K T++ + EKPE + S
Sbjct: 1464 PKSPTKKEKSPEKPEDVKS 1482
>CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)
Length = 2441
Score = 36.2 bits (82), Expect = 0.057
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 3 EKPTSRDQYGPPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQ 62
+ PT P ++ P+ + A V P ++PP +TP S Q+PT
Sbjct: 898 QTPTPTPGSVPSAAQTQSTPTVQAAAQAQVTPQPQTPVQPPSVATPQSSQQQPT------ 951
Query: 63 SPAKSKSPLVPLSNKYSILDYQ-NTISSKTPGKTEQYE 99
P ++ P PLS + +D + T S+ T +T +
Sbjct: 952 -PVHTQPPGTPLSQAAASIDNRVPTPSTVTSAETSSQQ 988
Score = 30.4 bits (67), Expect = 3.1
Identities = 21/58 (36%), Positives = 32/58 (54%), Gaps = 3/58 (5%)
Query: 13 PPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQ-IVQSPAKSKS 69
PP ++ +PS + +AP +TP + P PSTP S Q PT + V S A+++S
Sbjct: 860 PPASTAAGMPS-LQHPTAP-GMTPPQPAAPTQPSTPVSSGQTPTPTPGSVPSAAQTQS 915
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia
protein 3 homolog (Histone-lysine N-methyltransferase, H3
lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR
protein)
Length = 4911
Score = 35.8 bits (81), Expect = 0.075
Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 6/129 (4%)
Query: 4 KPTSRDQYGPPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQS 63
+PTS+D Y P G+ R + S + SS +PPG PT Q +
Sbjct: 2124 RPTSQDPYSQPPGTPRPVVDSYSQSSGTARSNTDPYSQPPGTPRPTTVDPYSQQPQTPRP 2183
Query: 64 PAKSKSPLVPLSNKYSILDYQNTISSKTPGKTEQYEYQEKPECLPSVMIEKAWLNCNPRD 123
++ + P++N+ Y + + PG + Y +P P I + + +
Sbjct: 2184 STQTDLFVTPVTNQRHSDPYAHPPGTPRPGISVPY---SQPPATPRPRISEGFTRSS--- 2237
Query: 124 IAKQVFPPN 132
+ + V PN
Sbjct: 2238 MTRPVLMPN 2246
Score = 31.2 bits (69), Expect = 1.8
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 13 PPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQSPAKSKSPLV 72
P + + P+ T S P ++++P GPSTP ++ + + P S
Sbjct: 3635 PGISETTSTPAVSTPSELPQQADQ-ESVEPVGPSTPNMAAGQLCTELENKLPNSDFSQAT 3693
Query: 73 PLSNKYSILDYQNTISSKTPGKTEQYEYQE 102
P Y+ + + +S +TP KTE+ + ++
Sbjct: 3694 PNQQTYANSEV-DKLSMETPAKTEEIKLEK 3722
>NKCR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer
cells cyclophilin-related protein) (NK-TR protein)
Length = 1453
Score = 35.0 bits (79), Expect = 0.13
Identities = 21/73 (28%), Positives = 38/73 (51%), Gaps = 7/73 (9%)
Query: 32 VAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQSPAKSKSPLVPLSNKYSILDYQNTISSKT 91
+ V PL PP P + +P+ +I + AK+ + L+P+ + YS+ + + T+SS +
Sbjct: 603 IPVIPLSDSPPPSRWKPGQKPWKPSYERIQEMKAKT-THLLPVQSTYSLTNIKATVSSSS 661
Query: 92 PGKTEQYEYQEKP 104
Y +EKP
Sbjct: 662 ------YHKREKP 668
>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)
Length = 2442
Score = 35.0 bits (79), Expect = 0.13
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 3 EKPTSRDQYGPPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQ 62
+ PT P ++ P+ + A V P ++PP +TP S Q+PT
Sbjct: 897 QTPTPTPGSVPSATQTQSTPTVQAAAQAQVTPQPQTPVQPPSVATPQSSQQQPT------ 950
Query: 63 SPAKSKSPLVPLSNKYSILD 82
P ++ P PLS + +D
Sbjct: 951 -PVHAQPPGTPLSQAAASID 969
Score = 28.9 bits (63), Expect = 9.2
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 13 PPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQR---PTVSQIVQSPAKSKS 69
PP ++ +PS + P +TP + P PSTP SS + PT + + +
Sbjct: 858 PPASTAAGMPS--LQHTTPPGMTPPQPAAPTQPSTPVSSSGQTPTPTPGSVPSATQTQST 915
Query: 70 PLVPLSNKYSILDYQNT----ISSKTPGKTEQ 97
P V + + + T S TP ++Q
Sbjct: 916 PTVQAAAQAQVTPQPQTPVQPPSVATPQSSQQ 947
>PCLO_RAT (Q9JKS6) Piccolo protein (Multidomain presynaptic
cytomatrix protein)
Length = 5085
Score = 34.3 bits (77), Expect = 0.22
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 20 KLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQSPAKSKSPLVPLSN--- 76
K P+ G+ A P KT T SSQ+P + Q+P K PL P+ +
Sbjct: 290 KSPAQPAGTGKSPAQPPAKTPGQQAGLEKTSSSQQPGPKSLAQTPGHGKFPLGPVKSPAQ 349
Query: 77 -----KYSILDYQNTISSKTPGKTEQYEYQEKPECLPS 109
K+ ++K PG T+ Q P P+
Sbjct: 350 QPGTAKHPAQQPGPQTAAKVPGPTKTPAQQSGPGKTPA 387
Score = 30.8 bits (68), Expect = 2.4
Identities = 19/64 (29%), Positives = 29/64 (44%), Gaps = 2/64 (3%)
Query: 44 GPSTPTKSSQRPTVSQIVQSPAKSKSPLVPLSNKYSIL--DYQNTISSKTPGKTEQYEYQ 101
GP+ P+K + P+ S Q PAKS L P K + + + + + K EQ
Sbjct: 910 GPAAPSKQAPTPSQSPAAQGPAKSTGQLPPAPAKATAVKKEAKAAAAENLESKPEQAPTA 969
Query: 102 EKPE 105
+K E
Sbjct: 970 KKTE 973
Score = 30.4 bits (67), Expect = 3.1
Identities = 40/155 (25%), Positives = 57/155 (35%), Gaps = 27/155 (17%)
Query: 2 SEKPTSRDQYGPPLG--SSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPT--- 56
S+ P Q P S + P ++ P P + KPP P P ++PT
Sbjct: 607 SKSPVPSQQASPKKEPPSKQDSPKALESKKPPEPKKPPEPKKPPEPKKPPPLVKQPTLHG 666
Query: 57 ----------VSQIVQSPAKSKSPLVPLSNKYSILDYQNTISSKTPGKTE-----QYEYQ 101
V++ + PA K P PL + + K P TE Q
Sbjct: 667 PTPATAPQLPVAEALPEPAPPKEPSGPLPEQAKA--PVGDVEPKQPKMTETRADIQSSST 724
Query: 102 EKPECLPSVMIEKAWL-NCNP--RDIAK--QVFPP 131
KP+ L S + +A + +P D AK Q FPP
Sbjct: 725 TKPDILSSQVQSQAQVKTASPLKTDSAKPSQSFPP 759
>KML2_HUMAN (Q9H1R3) Myosin light chain kinase 2, skeletal/cardiac
muscle (EC 2.7.1.117) (MLCK2)
Length = 595
Score = 34.3 bits (77), Expect = 0.22
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 22 PSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQSPAKSK 68
PS+ P PL K PGP P K+ PT+ + ++PA K
Sbjct: 14 PSTDKAPKGPTGERPLAAGKDPGPPDPKKAPDPPTLKKDAKAPASEK 60
>PHFF_HUMAN (Q9NQC1) PHD finger protein 15
Length = 576
Score = 33.9 bits (76), Expect = 0.28
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 13 PPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQI-VQSPAKSKSPL 71
PP +S LPSS P+ TP ++ P P TP +++ S + V PA S PL
Sbjct: 433 PPRRTSSHLPSSPAAGDCPILATP-ESPPPLAPETPDEAASVAADSDVQVPGPAASPKPL 491
>CRK7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinase 7
(EC 2.7.1.37) (CDC2-related protein kinase 7) (CrkRS)
Length = 1490
Score = 33.9 bits (76), Expect = 0.28
Identities = 22/71 (30%), Positives = 31/71 (42%), Gaps = 1/71 (1%)
Query: 3 EKPTSRDQYGPPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQ 62
E TS + PPL + P + ++ P PL + PP P+ P + P+ Q
Sbjct: 517 ETETSEKETPPPLPTIASPPPPLPTTTPPPQTPPLPPL-PPIPALPQQPPLPPSQPAFSQ 575
Query: 63 SPAKSKSPLVP 73
PA S S L P
Sbjct: 576 VPASSTSTLPP 586
>PER3_HUMAN (P56645) Period circadian protein 3 (hPER3)
Length = 1210
Score = 33.5 bits (75), Expect = 0.37
Identities = 31/115 (26%), Positives = 46/115 (39%), Gaps = 15/115 (13%)
Query: 13 PPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPST------PTKSSQRPTVSQIVQSPAK 66
PP+ K PS T S+ P+K P ST P+++ PT + +
Sbjct: 1004 PPM----KNPSHPTASALSTGSPPMKNPSHPTASTLSMGLPPSRTPSHPTATVLSTGSPP 1059
Query: 67 SKSP-----LVPLSNKYSILDYQNTISSKTPGKTEQYEYQEKPECLPSVMIEKAW 116
S+SP S+ SI + SSK +Q + +K E P+V E W
Sbjct: 1060 SESPSRTGSAASGSSDSSIYLTSSVYSSKISQNGQQSQDVQKKETFPNVAEEPIW 1114
>K6B2_MOUSE (Q9Z1M4) Ribosomal protein S6 kinase beta 2 (EC
2.7.1.37) (S6K-beta 2) (70 kDa ribosomal protein S6
kinase 2) (p70-S6KB) (p70 ribosomal S6 kinase beta) (p70
S6Kbeta) (S6K2)
Length = 485
Score = 33.5 bits (75), Expect = 0.37
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 11 YGPPLGSSRKLPSSITGSSAPVAVTPLKTIKP-PGPSTPTKSSQRPTVSQIVQSPAKSKS 69
+ P L S R+L SS +P+ +P + +P PGP P + S P + P S +
Sbjct: 404 FQPKLRSPRRLNSSPRTPISPLKFSPFEGFRPSPGPPEPMEPSLPPLLPSPPSPPPTSTA 463
Query: 70 PL 71
PL
Sbjct: 464 PL 465
>WNK4_MOUSE (Q80UE6) Serine/threonine-protein kinase WNK4 (EC
2.7.1.37) (Protein kinase with no lysine 4) (Protein
kinase, lysine-deficient 4)
Length = 1222
Score = 33.1 bits (74), Expect = 0.49
Identities = 33/119 (27%), Positives = 55/119 (45%), Gaps = 14/119 (11%)
Query: 14 PLGSSRK---LPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQSPAKSKSP 70
PL SS LPSS SAP+ P P P +PT P+ + P+ + +P
Sbjct: 851 PLSSSASQVPLPSSSLPISAPL---PFSPSYPQDPLSPTSLPVCPSPPSL---PSTTAAP 904
Query: 71 LVPLSNKYS--ILDYQNTISSKTPGKTEQYEYQEKPECLPSVMIEKAWLNCNPRDIAKQ 127
L+ L++ +S ++ ++ S +PG Q P LPS+ + A +C+ ++ Q
Sbjct: 905 LLSLASAFSLAVMTVAQSLLSPSPGLLSQ-SPPAPPGPLPSLPLSLA--SCDQESLSAQ 960
>UBP8_MOUSE (Q80U87) Ubiquitin carboxyl-terminal hydrolase 8 (EC
3.1.2.15) (Ubiquitin thiolesterase 8)
(Ubiquitin-specific processing protease 8)
(Deubiquitinating enzyme 8) (mUBPy)
Length = 1080
Score = 33.1 bits (74), Expect = 0.49
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 11 YGPPLGSSRKLPSSITGSSAPVAVTPLKTIKPP-------GPSTPTKSSQRPTVSQIVQS 63
Y P + P + SSAP + P +KP PS +S P ++Q +Q
Sbjct: 631 YHSPTNTVHMYPPEMAPSSAPPSTPPTHKVKPQVPAERDREPSKLKRSYSSPDITQALQE 690
Query: 64 PAKSKSPLVPLSNK 77
K + + P+ N+
Sbjct: 691 EEKRRPAVTPMVNR 704
>PCLO_CHICK (Q9PU36) Piccolo protein (Aczonin) (Fragment)
Length = 5120
Score = 33.1 bits (74), Expect = 0.49
Identities = 35/128 (27%), Positives = 50/128 (38%), Gaps = 17/128 (13%)
Query: 13 PPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQSPAKSKSPLV 72
PP + PS S AP +PP + PTK +P S+ + P S S L
Sbjct: 738 PPATKQPQPPSQPPASQAPPKEAA--QAQPPPKAAPTKKETKPLASEKL-GPMASDSTLT 794
Query: 73 ----PLSNKYSIL--DYQNTISSKTPGKTEQYEYQEKPECLPSVMIEKAWLNCNPRDIAK 126
L K S+ T +K P + + E +P+ S + K LN +D
Sbjct: 795 TKGSDLEKKPSLAKDSKHQTAEAKKPAELSEQEKASQPKV--SCPLCKTGLNIGSKD--- 849
Query: 127 QVFPPNFH 134
PPNF+
Sbjct: 850 ---PPNFN 854
Score = 32.0 bits (71), Expect = 1.1
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 13 PPLGSSRKLPSSITGSSAPVAVTPLKTIKP---PGPSTPTKSSQRPTVSQIVQSPAKSKS 69
PP K S G++ +A P T P PGP P + Q T + +P K+
Sbjct: 309 PPQAGPTKPSSQTAGAAKSLAQQPGLTKPPGQQPGPEKPLQQKQASTTQPVESTPKKTFC 368
Query: 70 PL 71
PL
Sbjct: 369 PL 370
Score = 28.9 bits (63), Expect = 9.2
Identities = 22/63 (34%), Positives = 29/63 (45%), Gaps = 13/63 (20%)
Query: 15 LGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQSPAKSKSPLVPL 74
LG K+P G S PV+ KP P+TP Q+ V + SP KS +P P
Sbjct: 896 LGDMGKVPLPKLGPSQPVS-------KP--PATP----QKQPVPAVSHSPQKSSTPPTPA 942
Query: 75 SNK 77
+ K
Sbjct: 943 ATK 945
>NKCR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer
cells cyclophilin-related protein) (NK-TR protein)
Length = 1462
Score = 33.1 bits (74), Expect = 0.49
Identities = 19/66 (28%), Positives = 35/66 (52%), Gaps = 1/66 (1%)
Query: 32 VAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQSPAKSKSPLVPLSNKYSILDYQNTISSKT 91
+ V PL PP P + +P+ +I + AK+ + L+P+ + YS+ + + T SS +
Sbjct: 605 IPVIPLSDSPPPSRWKPGQKPWKPSYERIQEMKAKT-THLLPIQSTYSLANIKETGSSSS 663
Query: 92 PGKTEQ 97
K E+
Sbjct: 664 YHKREK 669
>KCH2_RAT (O08962) Potassium voltage-gated channel subfamily H member
2 (Voltage-gated potassium channel subunit Kv11.1)
(Ether-a-go-go related gene potassium channel 1) (ERG1)
(r-ERG) (RERG) (Ether-a-go-go related protein 1) (Eag
related protein 1)
Length = 1163
Score = 33.1 bits (74), Expect = 0.49
Identities = 33/111 (29%), Positives = 44/111 (38%), Gaps = 21/111 (18%)
Query: 5 PTSRDQYGPPLGSSRKL-PSSITGS--------SAPVAVTPLKTIKPPGPSTPTKSSQRP 55
P+ R Q G P G S PSS S S+P+ + P + +PPG S P
Sbjct: 921 PSCRGQPGGPWGESPSSGPSSPESSEDEGPGRSSSPLRLVPFSSPRPPGDS--------P 972
Query: 56 TVSQIVQSPAKSKSPLVPLSNKYSILDYQNTISSKTPGKTEQYEYQEKPEC 106
+ + KS PLS +S N S G + +YQE P C
Sbjct: 973 GGEPLTEDGEKSSDTCNPLSGAFS--GVSNIFSFW--GDSRGRQYQELPRC 1019
>GP10_DICDI (Q06885) Glycoprotein gp100 precursor (P29F8)
Length = 544
Score = 33.1 bits (74), Expect = 0.49
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 2 SEKPTSR-----DQYGPPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPT 56
+ KPTS Q PP S P + + +S P + TP T P STPT +SQ
Sbjct: 125 TSKPTSTPTSTPSQTIPPTVSPTVPPQTTSPTSKPTS-TPTPTSTPTPTSTPTPTSQTIP 183
Query: 57 VSQIVQSPAKSKSP 70
P KS P
Sbjct: 184 PPTTTPKPTKSSKP 197
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.312 0.130 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,461,286
Number of Sequences: 164201
Number of extensions: 1251203
Number of successful extensions: 4148
Number of sequences better than 10.0: 153
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 3871
Number of HSP's gapped (non-prelim): 377
length of query: 212
length of database: 59,974,054
effective HSP length: 106
effective length of query: 106
effective length of database: 42,568,748
effective search space: 4512287288
effective search space used: 4512287288
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0067a.13