BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0066.12
(163 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
LTB3_HUMAN (Q9NS15) Latent transforming growth factor beta bindi... 31 1.4
MB11_COPCI (P40333) Mating-type protein beta1-1 30 1.8
K6PF_PYRFU (Q9V2Z7) ADP-specific phosphofructokinase (EC 2.7.1.1... 30 1.8
OTX_STRPU (Q26417) Homeobox protein OTX (SPOTX) 30 3.1
YIA2_YEAST (P40559) Hypothetical 108.4 kDa protein in BET1-PAN1 ... 29 4.1
ROB2_HUMAN (Q9HCK4) Roundabout homolog 2 precursor 29 5.4
LTB3_MOUSE (Q61810) Latent transforming growth factor beta bindi... 29 5.4
GAH6_HUMAN (Q8N8A4) HERV-H_22q11.2 provirus ancestral Gag polypr... 29 5.4
UL84_HCMVT (P29839) 65 kDa early nonstructural protein (UL84 pro... 28 7.0
PUR4_SCHPO (O14228) Probable phosphoribosylformylglycinamidine s... 28 7.0
POLG_EC23C (Q9YID8) Genome polyprotein [Contains: Coat protein V... 28 7.0
NPH1_ARATH (O48963) Nonphototropic hypocotyl protein 1 (EC 2.7.1... 28 7.0
FTSK_HELPY (O25722) DNA translocase ftsK 28 7.0
UL84_HCMVA (P16727) 65 kDa early nonstructural protein (UL84 pro... 28 9.1
SAL3_MOUSE (Q62255) Sal-like protein 3 (Spalt-like protein 3) (M... 28 9.1
FACC_MOUSE (P50652) Fanconi anemia group C protein homolog (FACC... 28 9.1
ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phyt... 28 9.1
DOC2_HUMAN (Q92608) Dedicator of cytokinesis protein 2 28 9.1
CKI1_CAEEL (Q22197) Cyclin-dependent kinase inhibitor 1 28 9.1
>LTB3_HUMAN (Q9NS15) Latent transforming growth factor beta binding
protein 3 precursor (LTBP-3)
Length = 1302
Score = 30.8 bits (68), Expect = 1.4
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 15 SKPESSPSSTWFDMELP-------LPTTTSSETEPFRLDQAVCSHGLFMMAP 59
S+P S P+ WF +LP + T +ET+ RL+Q +C HG + P
Sbjct: 543 SRP-SPPTMRWFLPDLPPSRSAVEIAPTQVTETDECRLNQNICGHGECVPGP 593
>MB11_COPCI (P40333) Mating-type protein beta1-1
Length = 681
Score = 30.4 bits (67), Expect = 1.8
Identities = 16/36 (44%), Positives = 17/36 (46%)
Query: 7 PPPCNPNCSKPESSPSSTWFDMELPLPTTTSSETEP 42
PPP + P SSP S M LP P T SS P
Sbjct: 571 PPPLQSTNTFPSSSPFSALDGMSLPFPDTRSSAFLP 606
>K6PF_PYRFU (Q9V2Z7) ADP-specific phosphofructokinase (EC 2.7.1.146)
(ADP-dependent phosphofructokinase) (ADP-Pfk)
Length = 454
Score = 30.4 bits (67), Expect = 1.8
Identities = 20/64 (31%), Positives = 28/64 (43%)
Query: 81 DPSSSSPSFIVTVSQRSESIAVRVHHGTHLLSPHEVRALMVPTSLTASLNSWVFIGKLIS 140
DP V ++RSE I +R L E + ++VPT L + S V +G IS
Sbjct: 380 DPRDVKVGMSVPYNERSEYIKLRFEEAKRKLRLKEYKVVIVPTRLVPNPVSTVGLGDTIS 439
Query: 141 VVLF 144
F
Sbjct: 440 TGTF 443
>OTX_STRPU (Q26417) Homeobox protein OTX (SPOTX)
Length = 371
Score = 29.6 bits (65), Expect = 3.1
Identities = 22/70 (31%), Positives = 31/70 (43%), Gaps = 10/70 (14%)
Query: 2 EELEKPPPCNPNCSKPESSPSSTW--FDMELPLPTTTSSETEPFRLDQAVCSHGLFMMAP 59
++ + P N +KP + T E PTTTSS+T PF+ +V S P
Sbjct: 191 QQQQNGPNSNNTTNKPRPAKKKTPPPTPRENDAPTTTSSDTPPFKASPSVSS-----SMP 245
Query: 60 NS---WDPLS 66
N+ W P S
Sbjct: 246 NNNSIWSPAS 255
>YIA2_YEAST (P40559) Hypothetical 108.4 kDa protein in BET1-PAN1
intergenic region
Length = 946
Score = 29.3 bits (64), Expect = 4.1
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 75 LHDQDTDPSSSSPSFIVTVSQRSESIAVRVHHGTHLLSPHEVRALMVPTSLTASLNSWVF 134
L D + S +F++ + S+SIA H T + P R L P+S W+
Sbjct: 850 LDDDEKIAVLSDDAFVIESFEGSDSIAGPTHSPTPIPEPKRGRKLPPPSSDLKKW--WIG 907
Query: 135 IGKLISVVL 143
GK + VVL
Sbjct: 908 SGKQVKVVL 916
>ROB2_HUMAN (Q9HCK4) Roundabout homolog 2 precursor
Length = 1378
Score = 28.9 bits (63), Expect = 5.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 11 NPNCSKPESSPSSTWFDMELPLPTT---TSSETEPFRLDQ 47
N N SKP+ + STW ++ LP P +E E + ++Q
Sbjct: 1055 NKNSSKPQKNNGSTWANVPLPPPPVQPLPGTELEHYAVEQ 1094
>LTB3_MOUSE (Q61810) Latent transforming growth factor beta binding
protein 3 precursor (LTBP-3)
Length = 1268
Score = 28.9 bits (63), Expect = 5.4
Identities = 18/63 (28%), Positives = 28/63 (43%), Gaps = 7/63 (11%)
Query: 7 PPPCNPNCSKPESSPSSTWFDMELP-------LPTTTSSETEPFRLDQAVCSHGLFMMAP 59
PP P S P+ F +LP + T +ET+ RL+Q +C HG + P
Sbjct: 531 PPRPYPELISRPSPPTFHRFLPDLPPSRSAVEIAPTQVTETDECRLNQNICGHGQCVPGP 590
Query: 60 NSW 62
+ +
Sbjct: 591 SDY 593
>GAH6_HUMAN (Q8N8A4) HERV-H_22q11.2 provirus ancestral Gag
polyprotein (Gag polyprotein)
Length = 273
Score = 28.9 bits (63), Expect = 5.4
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 7 PPPCNPNCSKPESSPSSTWFDMELPLPTTTSSETEPFRLDQAVCSHGL 54
PPP NP+ + SP TW ++ T+ S + F L + + G+
Sbjct: 160 PPPYNPSIT----SPPHTWSGLQFSSATSASPPAQQFPLREVAGAEGI 203
>UL84_HCMVT (P29839) 65 kDa early nonstructural protein (UL84
protein)
Length = 587
Score = 28.5 bits (62), Expect = 7.0
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 56 MMAPNSWDPLSNTLTRPLRLHDQDTDPSSSSPSFIVTVSQRSESIAVRVHHGT-HLLSPH 114
MM S D S L P + D S SP I+T++ + + RVH GT HL+ H
Sbjct: 59 MMGVASTDDDSLLLKTP-----DELDKHSGSPQTILTLTDKHDIRQPRVHRGTYHLIQLH 113
>PUR4_SCHPO (O14228) Probable phosphoribosylformylglycinamidine
synthase (EC 6.3.5.3) (FGAM synthase) (FGAMS)
(Formylglycinamide ribotide amidotransferase) (FGARAT)
(Formylglycinamide ribotide synthetase)
Length = 1323
Score = 28.5 bits (62), Expect = 7.0
Identities = 22/82 (26%), Positives = 40/82 (47%), Gaps = 12/82 (14%)
Query: 17 PESSPSSTWFDMELPLPTTTSSETEPF-RLDQAVCSHGLFMMAPNSWDPLSNTLTRPLRL 75
P P F + ++T P + D ++ S+ +AP+S DP+ + + R LR+
Sbjct: 602 PIDLPMEVLFGKPPKMSRVAETQTIPLSKFDSSLKSY----LAPSS-DPILDAVERVLRM 656
Query: 76 HDQDTDPSSSSPSFIVTVSQRS 97
P+ +S SF++T+ RS
Sbjct: 657 ------PAVASKSFLITIGDRS 672
>POLG_EC23C (Q9YID8) Genome polyprotein [Contains: Coat protein VP0
(P1AB); Coat protein VP3 (P1C); Coat protein VP1 (P1D);
Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core
protein P2B; Core protein P2C; Core protein P3A;
Genome-linked protein VPG (P3
Length = 2188
Score = 28.5 bits (62), Expect = 7.0
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 83 SSSSPSFIVTVSQRSESIAVRVHHGTHLLSPHEVRALMVPTSLTASLNSWV 133
SS + I +V E+IA + GTH LS H+ L+ LTA L S +
Sbjct: 860 SSVNSEHIFSVDSNCETIAKDIF-GTHTLSQHQAIGLVGAILLTAGLMSTI 909
>NPH1_ARATH (O48963) Nonphototropic hypocotyl protein 1 (EC
2.7.1.37) (Phototropin)
Length = 996
Score = 28.5 bits (62), Expect = 7.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 5 EKPPPCNPNCSKPESSPSSTWFDMELPLPTTTSSET 40
++P P NP S E + +++W ++ P P T S +T
Sbjct: 65 QEPAPSNPVRSDQEIAVTTSWMALKDPSPETISKKT 100
>FTSK_HELPY (O25722) DNA translocase ftsK
Length = 858
Score = 28.5 bits (62), Expect = 7.0
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 2 EELEKPPPCNPNCSKPESSPSSTWFDMELPLP-TTTSSETEP----FRLDQAVCSHGLFM 56
+E K P N N P P + +P P TT +++EP ++ +H
Sbjct: 197 KENRKENPINENHKTPNEEPF-----LAIPTPYNTTLNDSEPQEGLVQISSHPPTHYTIY 251
Query: 57 MAPNSWDPLSNTLTRPLRLHDQDTDPSSSSPS 88
N +D L+N PL+ Q+T +P+
Sbjct: 252 PKRNRFDDLTNPTNPPLKEIKQETKEREPTPT 283
>UL84_HCMVA (P16727) 65 kDa early nonstructural protein (UL84
protein)
Length = 586
Score = 28.1 bits (61), Expect = 9.1
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 56 MMAPNSWDPLSNTLTRPLRLHDQDTDPSSSSPSFIVTVSQRSESIAVRVHHGT-HLLSPH 114
MM S D S L P + D S SP I+T++ + + RVH GT HL+ H
Sbjct: 59 MMGVASTDDDSLLLKTP-----DELDKYSGSPQTILTLTDKHDIRQPRVHRGTYHLIQLH 113
>SAL3_MOUSE (Q62255) Sal-like protein 3 (Spalt-like protein 3)
(MSal) (Fragment)
Length = 1323
Score = 28.1 bits (61), Expect = 9.1
Identities = 15/40 (37%), Positives = 20/40 (49%), Gaps = 3/40 (7%)
Query: 2 EELEKPPPCNP---NCSKPESSPSSTWFDMELPLPTTTSS 38
E L+K P C+ S P P +TW D + LPT +S
Sbjct: 464 EYLDKCPTCSGIPYGMSLPPEKPVTTWLDSKPVLPTVPTS 503
>FACC_MOUSE (P50652) Fanconi anemia group C protein homolog (FACC
protein)
Length = 591
Score = 28.1 bits (61), Expect = 9.1
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 123 TSLTASLNSWVFIGKLISVVLFRFRLRCRECCDFPK 158
TS + LNSW I L+S VL FR +E C F K
Sbjct: 104 TSAESGLNSW--IRGLLSHVLSAFRFDMKEVCLFTK 137
>ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor
(Phytocyanin-like protein)
Length = 349
Score = 28.1 bits (61), Expect = 9.1
Identities = 24/81 (29%), Positives = 32/81 (38%), Gaps = 3/81 (3%)
Query: 8 PPCNPNCSKPESSPSSTWFDMELPLPTTTSSETEPFRLDQAVCSHGLFMMAPNSWDPLSN 67
PP P + P S S+ P+ +SS P A + MAP S P+SN
Sbjct: 217 PPAPPKSTSPVSPSSAPMTSPPAPMAPKSSSTIPP---SSAPMTSPPGSMAPKSSSPVSN 273
Query: 68 TLTRPLRLHDQDTDPSSSSPS 88
+ T L + SS S S
Sbjct: 274 SPTVSPSLAPGGSTSSSPSDS 294
>DOC2_HUMAN (Q92608) Dedicator of cytokinesis protein 2
Length = 1830
Score = 28.1 bits (61), Expect = 9.1
Identities = 15/31 (48%), Positives = 18/31 (57%), Gaps = 1/31 (3%)
Query: 11 NPNCSKPESSPSSTWFDMELPLPTTTSSETE 41
N +CS P S P+S FD+EL P T E E
Sbjct: 1652 NSDCSTP-SKPTSESFDLELASPKTPRVEQE 1681
>CKI1_CAEEL (Q22197) Cyclin-dependent kinase inhibitor 1
Length = 184
Score = 28.1 bits (61), Expect = 9.1
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 5 EKPPPCNPNCSKPESSPSSTWFDMELPLPTTTSSETEPFRLDQAVCSHGLFMMAPNSWDP 64
E+P +PN S + W E P P T ++ + D S ++PN P
Sbjct: 102 EEPSLMDPNSSFEDEEEPKKWQFREPPTPRKTPTKRQQKMTDFMAVSRKKNSLSPNKLSP 161
Query: 65 LSNTLTRPLRLHDQDTDPSSSSP 87
+ N + P SS SP
Sbjct: 162 V-NVIFTPKSRRPTIRTRSSCSP 183
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.132 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,173,738
Number of Sequences: 164201
Number of extensions: 763855
Number of successful extensions: 2159
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2154
Number of HSP's gapped (non-prelim): 19
length of query: 163
length of database: 59,974,054
effective HSP length: 102
effective length of query: 61
effective length of database: 43,225,552
effective search space: 2636758672
effective search space used: 2636758672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0066.12