BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0066.1
(332 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YDAN_ECOLI (P64423) Hypothetical protein ydaN 41 0.004
YDAN_ECOL6 (P64424) Hypothetical protein ydaN 41 0.004
YDAN_ECO57 (P64425) Hypothetical protein ydaN 41 0.004
MRPB_BACSU (O05259) Na(+)/H(+) antiporter subunit B (Multiple re... 33 1.3
YN78_BACHD (Q9KAB2) Hypothetical UPF0144 protein BH2378 30 6.4
VGLB_RHCM6 (P89053) Glycoprotein B precursor 30 6.4
VGLB_HCMVT (P13201) Glycoprotein B precursor [Contains: Glycopro... 30 6.4
TCPG_YEAST (P39077) T-complex protein 1, gamma subunit (TCP-1-ga... 30 6.4
PKD2_HUMAN (Q13563) Polycystin 2 (Autosomal dominant polycystic ... 30 6.4
DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain)... 30 6.4
DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5) 30 6.4
YPD8_CAEEL (Q11187) Hypothetical protein C05D11.8 in chromosome III 30 8.4
MD11_MOUSE (Q9WTX8) Mitotic spindle assembly checkpoint protein ... 30 8.4
>YDAN_ECOLI (P64423) Hypothetical protein ydaN
Length = 327
Score = 41.2 bits (95), Expect = 0.004
Identities = 23/60 (38%), Positives = 36/60 (59%), Gaps = 2/60 (3%)
Query: 204 LQDRSLRVTHNLAVFAGVGMVLTIITGLFGINVDGIPGAEHTPYAFGLFTAIL-VFIGAV 262
+Q+ R T+ +++ A V + T +TGLFG+N+ GIPG + F +F +L V IG V
Sbjct: 259 MQENLARRTYTMSLMAMVFLPSTFLTGLFGVNLGGIPGG-GWQFGFSIFCILLVVLIGGV 317
>YDAN_ECOL6 (P64424) Hypothetical protein ydaN
Length = 327
Score = 41.2 bits (95), Expect = 0.004
Identities = 23/60 (38%), Positives = 36/60 (59%), Gaps = 2/60 (3%)
Query: 204 LQDRSLRVTHNLAVFAGVGMVLTIITGLFGINVDGIPGAEHTPYAFGLFTAIL-VFIGAV 262
+Q+ R T+ +++ A V + T +TGLFG+N+ GIPG + F +F +L V IG V
Sbjct: 259 MQENLARRTYTMSLMAMVFLPSTFLTGLFGVNLGGIPGG-GWQFGFSIFCILLVVLIGGV 317
>YDAN_ECO57 (P64425) Hypothetical protein ydaN
Length = 327
Score = 41.2 bits (95), Expect = 0.004
Identities = 23/60 (38%), Positives = 36/60 (59%), Gaps = 2/60 (3%)
Query: 204 LQDRSLRVTHNLAVFAGVGMVLTIITGLFGINVDGIPGAEHTPYAFGLFTAIL-VFIGAV 262
+Q+ R T+ +++ A V + T +TGLFG+N+ GIPG + F +F +L V IG V
Sbjct: 259 MQENLARRTYTMSLMAMVFLPSTFLTGLFGVNLGGIPGG-GWQFGFSIFCILLVVLIGGV 317
>MRPB_BACSU (O05259) Na(+)/H(+) antiporter subunit B (Multiple
resistance and pH homeostasis protein B) (Mrp complex
subunit B)
Length = 143
Score = 32.7 bits (73), Expect = 1.3
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 16/79 (20%)
Query: 214 NLAVFAGVGMVLTIITGLFGINVDGIPGAEHTPYAFGLF-----------TAILVFIGAV 262
N AG G++L ++TG+ G V G P HT FG F TA + +G
Sbjct: 70 NFIYVAGAGLLLAVLTGV-GSFVFGAPFLTHT---FGYFQLPILGKTELATATIFDLGVY 125
Query: 263 LVVVGLVYLGLKKPIAEEK 281
LVVVG+ + + + I EE+
Sbjct: 126 LVVVGIT-MTIIQTIGEEE 143
>YN78_BACHD (Q9KAB2) Hypothetical UPF0144 protein BH2378
Length = 521
Score = 30.4 bits (67), Expect = 6.4
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 251 LFTAILVFIGAVLVVVGLVYLGLKKPIAEEKVEVRKLELQELVKMFQHEAE 301
LF +IL+ + AV VVG + ++K IAE K+ + +++V+ + EAE
Sbjct: 6 LFISILLVVSAVSAVVGYL---VRKSIAEAKISSAEHAAKQIVEDAKREAE 53
>VGLB_RHCM6 (P89053) Glycoprotein B precursor
Length = 854
Score = 30.4 bits (67), Expect = 6.4
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 221 VGMVLTIITGLFGINVDGIPGAEHTPYAFGLFTAILVFIGAVLVVVGLVYLGLKK 275
+G+ + + G V+G+ G P FG FT IL F+ AVL V+ L+Y+ K+
Sbjct: 698 LGVAIGAVGGAVASFVEGVVGFIKNP--FGSFTVIL-FLLAVLGVIYLIYMRQKR 749
>VGLB_HCMVT (P13201) Glycoprotein B precursor [Contains:
Glycoprotein GP55]
Length = 907
Score = 30.4 bits (67), Expect = 6.4
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 177 EMIEEQEAVRGRLFTIQDVTQSTVRAWLQDRSLRVTHNLAVFAGVGMVLTIITGLFGINV 236
E++ E + + R+ ++D + +L+ ++ A VG+ + + G V
Sbjct: 682 EIMREFNSYKQRVKYVEDKVVDPLPPYLKGLDDLMSGLGAAGKAVGVAIGAVGGAVASVV 741
Query: 237 DGIPGAEHTPYAFGLFTAILVFIGAVLVVVGLVY 270
+G+ P FG FT ILV I AV++++ L+Y
Sbjct: 742 EGVATFLKNP--FGAFTIILVAI-AVVIIIYLIY 772
>TCPG_YEAST (P39077) T-complex protein 1, gamma subunit
(TCP-1-gamma) (CCT-gamma)
Length = 534
Score = 30.4 bits (67), Expect = 6.4
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 118 EDLNLFVIILNQEIRKLSTQVIRVKWSLHAREEIVFELLQHLKGIGARSLLEGIRKSTRE 177
ED N + I ++++ + Q++ V+ +L E+ V +L QH G S+L ++KS
Sbjct: 267 EDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNN 326
Query: 178 MI 179
I
Sbjct: 327 RI 328
>PKD2_HUMAN (Q13563) Polycystin 2 (Autosomal dominant polycystic
kidney disease type II protein) (Polycystwin) (R48321)
Length = 968
Score = 30.4 bits (67), Expect = 6.4
Identities = 14/59 (23%), Positives = 31/59 (51%), Gaps = 3/59 (5%)
Query: 251 LFTAILVFIGAVLVVVGLVYLGLKKPIAEEKVEVRKLELQELVKMFQHEAETHAQVRKN 309
+F + + L ++ Y +K +A++K E +EL +L++ H+A +++KN
Sbjct: 665 VFFMFFILLNMFLAIINDTYSEVKSDLAQQKAE---MELSDLIRKGYHKALVKLKLKKN 720
>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain)
(B-dynamin)
Length = 851
Score = 30.4 bits (67), Expect = 6.4
Identities = 31/117 (26%), Positives = 55/117 (46%), Gaps = 15/117 (12%)
Query: 106 EIELKFMNRRNYEDLNLFVIILNQEIRKLSTQVIRVKWSLHAREEIVFELLQHLKGIGAR 165
++E + RN D ++ I+N+ +R L + I + +E I ELL +L G +
Sbjct: 654 QLERQVETIRNLVDS--YMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQ 711
Query: 166 SLL--EGIRKSTR--EMIEEQEAVRGRLFTIQDVTQSTVR---------AWLQDRSL 209
+ L E ++ R EM+ A++ L I D+ +TV +WLQ +S+
Sbjct: 712 NTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTTTVSTPMPPPVDDSWLQVQSV 768
>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)
Length = 867
Score = 30.4 bits (67), Expect = 6.4
Identities = 31/117 (26%), Positives = 55/117 (46%), Gaps = 15/117 (12%)
Query: 106 EIELKFMNRRNYEDLNLFVIILNQEIRKLSTQVIRVKWSLHAREEIVFELLQHLKGIGAR 165
++E + RN D ++ I+N+ +R L + I + +E I ELL +L G +
Sbjct: 654 QLERQVETIRNLVDS--YMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQ 711
Query: 166 SLL--EGIRKSTR--EMIEEQEAVRGRLFTIQDVTQSTVR---------AWLQDRSL 209
+ L E ++ R EM+ A++ L I D+ +TV +WLQ +S+
Sbjct: 712 NTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTTTVSTPMPPPVDDSWLQVQSV 768
>YPD8_CAEEL (Q11187) Hypothetical protein C05D11.8 in chromosome III
Length = 873
Score = 30.0 bits (66), Expect = 8.4
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 45 MHIKGSVSRINVLGIAEVQELLSGGGY--NVPRTVHEVIAQLACRLSRWDDRLFRKSIFG 102
+ + S+ I L I + E++ + N VH+ I RL W R I+
Sbjct: 104 IQLTDSLKSICQLAIIRIFEMIVSDSHSQNHCLLVHKPILNPLFRLCEWFQRA---DIYW 160
Query: 103 VADEIELKFMNRRNYEDLNLFVIILNQEIRKLSTQVIRVKWSLHAREEIVF-ELLQHLKG 161
+ E N++ E +FV++LNQ KL + + H+ + +VF EL+ L
Sbjct: 161 RVSKSE----NKKTSEAEKMFVLLLNQICTKLVEDRTLLHFFFHSNQFVVFTELIPFLYS 216
Query: 162 IG 163
G
Sbjct: 217 AG 218
>MD11_MOUSE (Q9WTX8) Mitotic spindle assembly checkpoint protein
MAD1 (Mitotic arrest deficient-like protein 1)
(MAD1-like 1)
Length = 717
Score = 30.0 bits (66), Expect = 8.4
Identities = 21/80 (26%), Positives = 36/80 (44%)
Query: 112 MNRRNYEDLNLFVIILNQEIRKLSTQVIRVKWSLHAREEIVFELLQHLKGIGARSLLEGI 171
+N R EDL+ FV+ L Q L + + S E++ +L ++ A+ L E
Sbjct: 326 LNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERK 385
Query: 172 RKSTREMIEEQEAVRGRLFT 191
++ T E + + R L T
Sbjct: 386 KRETHEALARRLQKRNALLT 405
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.141 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,246,568
Number of Sequences: 164201
Number of extensions: 1411636
Number of successful extensions: 4430
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4425
Number of HSP's gapped (non-prelim): 13
length of query: 332
length of database: 59,974,054
effective HSP length: 111
effective length of query: 221
effective length of database: 41,747,743
effective search space: 9226251203
effective search space used: 9226251203
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0066.1