BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0065.6
(516 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YAC3_SCHPO (Q09817) Hypothetical protein C16C9.03 in chromosome I 407 e-113
NMD3_YEAST (P38861) Nonsense-mediated mRNA decay protein 3 386 e-107
OXAA_WIGBR (Q8D3I8) Membrane protein oxaA 37 0.12
STKA_HUMAN (O94804) Serine/threonine-protein kinase 10 (EC 2.7.1... 36 0.27
YKI2_YEAST (P36080) Hypothetical 50.5 kDa protein in MDH1-VMA5 i... 35 0.47
TRHY_HUMAN (Q07283) Trichohyalin 35 0.47
RPC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC... 35 0.47
ECR_MANSE (P49883) Ecdysone receptor (Ecdysteroid receptor) (20-... 35 0.47
DAXX_HUMAN (Q9UER7) Death domain-associated protein 6 (Daxx) (hD... 35 0.47
GARP_PLAFF (P13816) Glutamic acid-rich protein precursor 34 0.80
MYS2_SCHPO (Q9USI6) Myosin type II heavy chain 1 33 1.8
K21A_HUMAN (Q7Z4S6) Kinesin family member 21A (Kinesin-like prot... 33 1.8
ARP2_DROME (P45888) Actin-like protein 2 (Actin-like protein 14D) 33 1.8
RPC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC... 33 2.3
TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protei... 32 3.0
RH12_MACFA (Q9BE31) Rho-GTPase-activating protein 12 (QflA-11329) 32 4.0
POLG_PEV9U (O41174) Genome polyprotein [Contains: Coat protein V... 32 4.0
NLPD_BUCAI (P57493) Protein nlpD/lppB homolog 32 4.0
NEB1_RAT (O35867) Neurabin-I (Neural tissue-specific F-actin bin... 32 4.0
RPC1_PLAFA (P27625) DNA-directed RNA polymerase III largest subu... 31 6.7
>YAC3_SCHPO (Q09817) Hypothetical protein C16C9.03 in chromosome I
Length = 498
Score = 407 bits (1045), Expect = e-113
Identities = 206/494 (41%), Positives = 307/494 (61%), Gaps = 29/494 (5%)
Query: 19 SVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPECESYLQPPRTWIKLQL 78
++LCC+CG+P PNAA MC+ C++ DIT G+ + + HC ECE Y+QPP W+ L
Sbjct: 21 TILCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHCRECERYMQPPNNWMIAPL 80
Query: 79 ESKELLTFCLKKLQKNMSSSKVRMVHAEFIWTEPHSKRIKVNVKVQKEVLNGAILEQSYL 138
ES+EL+ CLKKL+ ++VR+V A FIWTEPHS+RIKV + VQKE IL+QS+
Sbjct: 81 ESRELMAICLKKLR---GLNQVRLVDANFIWTEPHSRRIKVKLTVQKEAFTNTILQQSFQ 137
Query: 139 VEYVQQEHLCESCSKVAANPDQWVAAVQLRQHVSHRRTFFYLEQLILKHGAAASAIRIKQ 198
VE+ C C++ P W A Q+RQ V H+RTF YLEQ+ILKH A + + IK+
Sbjct: 138 VEFYVNNTQCPDCARTYT-PHIWKAVCQVRQKVLHKRTFLYLEQIILKHKAHMNTVNIKE 196
Query: 199 MDEGIDFYFSNRSHGVKFVEFIGKVAPIKSRSDKQLVSHDTKSNEYNYKHTFSVEISPIC 258
+GIDFYF R+H +K VEF+ V PI+ + ++L+S D KSN NYK T+S+EI PIC
Sbjct: 197 TKDGIDFYFGQRAHAIKMVEFLSAVVPIRYKGSEELISEDFKSNTANYKFTYSIEIVPIC 256
Query: 259 REDLICLPPKVALSLGNLGPIVICTKVTNSIALLDPFTLRYCFLDADQYWRSSFKSLLTS 318
++DL+CLP VA + GN+ +V+CTKV +I LDP TL+ C + YWR+ F +L
Sbjct: 257 KDDLVCLPKTVAKAHGNIAQLVVCTKVGPTIRFLDPLTLQTCDMLPSIYWRTPFPALADI 316
Query: 319 RQLVEYIVLDVEVVSSEVTVGGTKYVLADAQVARVSDFGKNDTIFSIKTHLGHLLNPGDY 378
+L E+IV DV+++ KY LAD ++ + SD + T +THLG +LN G+
Sbjct: 317 PELTEFIVADVDLLGPT----NGKYALADVELIKSSDGSTHLT----RTHLGGILNAGNT 368
Query: 379 ALGYDLYGANNNDIELDKYKGLILPDAILVKKSYEEKRQKKRGKARSWKLKSLNMEVDDK 438
L Y L N N+ D + +P+ ++VKK+Y + ++K R+W+LK++ M+ +
Sbjct: 369 VLAYHLAVTNFNNEVYDTLREDSIPEVVIVKKTYPQTKKKN----RNWRLKTIGMQKAED 424
Query: 439 VARADPDKMHSEYEQFLKDLEENPDLRFNISLYRNKEYQPSEIASVTD---------GEE 489
V + D ++ +YE FL++LEE+P+LR ++LY+ P + +V D E+
Sbjct: 425 VKKQDIERQERDYELFLQNLEEDPELRQGVNLYK----APVKAIAVADTDMDEEDEVDED 480
Query: 490 LPSVPLEELLADLE 503
+P + ++ELL D+E
Sbjct: 481 IPQISVDELLDDVE 494
>NMD3_YEAST (P38861) Nonsense-mediated mRNA decay protein 3
Length = 518
Score = 386 bits (991), Expect = e-107
Identities = 196/503 (38%), Positives = 312/503 (61%), Gaps = 25/503 (4%)
Query: 14 HRTVGSVLCCKCGIPMQPNAAN-MCVKCLRSEVDITEGLLKRLVLVHCPECESYLQPPRT 72
H+ ++LCC CG P+ + MC C++ VDIT+G+ + + C CE +LQPP
Sbjct: 11 HQNAATLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQ 70
Query: 73 WIKLQLESKELLTFCLKKLQKNMSSSKVRMVHAEFIWTEPHSKRIKVNVKVQKEVLNGAI 132
WI+ +LES+ELL CL++L+ + VR+V A FIWTEPHS+RI++ + VQ E + I
Sbjct: 71 WIRAELESRELLAICLRRLK---GLTFVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTI 127
Query: 133 LEQSYLVEYVQQEHLCESCSKVAANPDQWVAAVQLRQHVSHRRTFFYLEQLILKHGAAAS 192
++Q++ VEY+ C C++ + + W A VQ+RQ V H+RTF +LEQLILKH A
Sbjct: 128 IQQTFEVEYIVIAMQCPDCAR-SYTTNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVD 186
Query: 193 AIRIKQMDEGIDFYFSNRSHGVKFVEFIGKVAPIKSRSDKQLVSHDTKSNEYNYKHTFSV 252
I I + +G+DF+++ ++H VK ++F+ V PIK + ++L+S DT + YK ++SV
Sbjct: 187 TISISEAKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSV 246
Query: 253 EISPICREDLICLPPKVALSLGNLGPIVICTKVTNSIALLDPFTLRYCFLDADQYWRSSF 312
EI PIC++DL+ LP K+A S+GN+ V+C+K++N++ +DP TL+ L YWR+ F
Sbjct: 247 EIVPICKDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPF 306
Query: 313 KSLLTSRQLVEYIVLDVEVVSSEVTVGGTKYVLADAQVARVSDFGKNDTIFSIKTHLGHL 372
+L QLVE+IVLDV+ S+ ++ G VLAD VAR SD G ND ++ +++HLG +
Sbjct: 307 NALADVTQLVEFIVLDVD--STGISRGNR--VLADITVARTSDLGVNDQVYYVRSHLGGI 362
Query: 373 LNPGDYALGYDLYGANNNDIELDKYKGLILPDAILVKKSYEEKRQKKRGKARSWKLKSL- 431
+ GD +GY + +N N D +PD +LVKK Y Q+K K+R WKLK +
Sbjct: 363 CHAGDSVMGYFIANSNYNSDLFDGLNIDYVPDVVLVKKLY----QRKSKKSRHWKLKRMA 418
Query: 432 --------NMEVDDKVARADPDKMHSEYEQFLKDLEENPDLRFNISLYRNKE--YQPSEI 481
+++ + + + + ++ +YE FL++LEE+ +LR +++LY+N+E P E
Sbjct: 419 KEHKDIDASLDYNSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEH 478
Query: 482 ASVTD-GEELPSVPLEELLADLE 503
D E+ P + ++ELL +L+
Sbjct: 479 EMDEDEDEDAPQINIDELLDELD 501
>OXAA_WIGBR (Q8D3I8) Membrane protein oxaA
Length = 540
Score = 37.0 bits (84), Expect = 0.12
Identities = 54/256 (21%), Positives = 103/256 (40%), Gaps = 41/256 (16%)
Query: 285 VTNSIALLDPFTLRYCFLDADQYWRSSFKSL----LTSRQLVEYIVLDVEVVSSEVTVGG 340
V N+ + + + LDA Q +KSL + ++ +E ++ EV S E +
Sbjct: 3 VQNNFLFIAFIFVTFMMLDAWQSESYDYKSLDKNHIIEKKNIENKNINKEVFSRENYIT- 61
Query: 341 TKYVLADAQVARVSDFGKNDTIFSIKTHLGHLLNPGD-----------YALGYDLYGANN 389
V+ D + +++ +G + S++T+L + N Y L N+
Sbjct: 62 ---VITDLFILKINTYGGDIEEASLRTYLSNTKNNLPLKILDRSKNFIYKLKSGFITKND 118
Query: 390 NDIE--------LDKYKGLILPDA---ILVKKSYEEKRQKKRGKARSWKLKSLNMEVDDK 438
+DI + K IL D + V Y + K K +K S +++++
Sbjct: 119 HDINNLIHIPNFISDKKLYILEDNSDYLQVPLFYNGENGLKYVKNFIFKKNSFSLKINYS 178
Query: 439 VARADPDKMH----SEYEQFLKDLEENPDLRFNISLYR-------NKEYQPSEIASVTDG 487
+ + DKM + EQ +KD E N FN YR N +Y+ + + +++
Sbjct: 179 IKNTNKDKMEMMFFGQLEQSIKDQEINNGYNFNFHTYRGAAYSSDNNKYKKYDFSEISND 238
Query: 488 EELPSVPLEELLADLE 503
+ L + +A L+
Sbjct: 239 KNLNVITSNGWIAMLQ 254
>STKA_HUMAN (O94804) Serine/threonine-protein kinase 10 (EC
2.7.1.37) (Lymphocyte-oriented kinase)
Length = 968
Score = 35.8 bits (81), Expect = 0.27
Identities = 27/94 (28%), Positives = 49/94 (51%), Gaps = 14/94 (14%)
Query: 433 MEVDDKVARADP------DKMHSEYEQFLK-DLEENPDLRFNISLYRNKEYQPSEIASVT 485
M V K+A++DP K E+ FLK L++NP+ R + + + ++S+T
Sbjct: 243 MRVLLKIAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEHPF----VSSIT 298
Query: 486 DGEELPSVPLE---ELLADLELGEDEDEEDDMME 516
+ L + E E++ ++E G DE EE+D ++
Sbjct: 299 SNKALRELVAEAKAEVMEEIEDGRDEGEEEDAVD 332
>YKI2_YEAST (P36080) Hypothetical 50.5 kDa protein in MDH1-VMA5
intergenic region
Length = 434
Score = 35.0 bits (79), Expect = 0.47
Identities = 27/109 (24%), Positives = 46/109 (41%), Gaps = 3/109 (2%)
Query: 384 LYGANNNDIELDKYKGLILPDAILVKKSYEEKRQKKRGKARSWKLKSLNMEVDDKVARAD 443
++ N+I L+ K PD + KKS E+ + +R K L ++ D ++
Sbjct: 134 IFDDEGNEIPLESKKDTTEPDRSVEKKSITEEEKLQRKKNLEALRSKLQAKISDMKSKR- 192
Query: 444 PDKMHSEYEQFLKDLEENPDLRFNISLYRNKEYQPSEIASVTDGEELPS 492
K E L + +L+ L +E EIAS +D E++ S
Sbjct: 193 --KAPGSREAILAQRKRKEELKKRKRLESEQEQDQDEIASDSDMEDIDS 239
>TRHY_HUMAN (Q07283) Trichohyalin
Length = 1898
Score = 35.0 bits (79), Expect = 0.47
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 413 EEKRQKKRGKARSWKLKSLNMEVDDKVARADPDKMHSEYEQFLKDLEENPDLRFNISLYR 472
E+K K+R + + + L E ++K R + D+ E EQ L++ EE P LR R
Sbjct: 1261 EQKEAKRRDRKSQEEKQLLREEREEKRRRQETDRKFREEEQLLQEREEQPLLRQE----R 1316
Query: 473 NKEYQPSEIASVTDGEE 489
+++++ E+ G +
Sbjct: 1317 DRKFREEELLHQEQGRK 1333
>RPC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1373
Score = 35.0 bits (79), Expect = 0.47
Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 13/139 (9%)
Query: 291 LLDPFTLRYCFLDADQYWRSSFKSLLTSRQLVEYIVLDVE---VVSSEVTVGGTKYVLAD 347
+L PF L +CFL D YW + + + L E I + + V S ++ + V D
Sbjct: 1037 ILTPFNLNWCFLHHD-YWEDTSTIISLGQFLCENICISKDGPCVKSGQIII-----VHVD 1090
Query: 348 AQVARVSDFGKNDTIFSIKTHLGHLLNPGDYALGYDLYGANNNDIELDKYKGLILPDAIL 407
+ V R++ + ++ H G +L GD + + + + DI +GL + +L
Sbjct: 1091 SLVIRLAKYHLATRGATVHGHYGEILYEGDTLVTFIYEKSRSGDIT----QGLPKVEQVL 1146
Query: 408 VKKSYEEKRQKKRGKARSW 426
+S + + W
Sbjct: 1147 EVRSIDSISMNLEKRVEGW 1165
>ECR_MANSE (P49883) Ecdysone receptor (Ecdysteroid receptor)
(20-hydroxy-ecdysone receptor) (20E receptor)
Length = 556
Score = 35.0 bits (79), Expect = 0.47
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 403 PDAILVKKSYEEKRQKKRGKARSWKLKSLNMEVDD---KVARADPD-----KMHSEYEQF 454
P+ ++ + + + KR++K + KL VDD + + DP ++H +F
Sbjct: 214 PECVVPESTCKNKRREKEAQREKDKLPVSTTTVDDHMPAIMQCDPPPPEAARIHEVVPRF 273
Query: 455 LKD-LEENPDLRFNISLYRNKEYQPSEIASVTDGEELPS-VPLEELLADLELGEDEDEED 512
L + L E L+ L N++ + + +G E PS L+ + +L E+E+EE
Sbjct: 274 LTEKLMEQNRLKNVTPLSANQKSLIARLVWYQEGYEQPSEEDLKRVTQTWQLEEEEEEET 333
Query: 513 DM 514
DM
Sbjct: 334 DM 335
>DAXX_HUMAN (Q9UER7) Death domain-associated protein 6 (Daxx)
(hDaxx) (Fas death domain-associated protein) (ETS1
associated protein 1) (EAP1)
Length = 740
Score = 35.0 bits (79), Expect = 0.47
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 25/168 (14%)
Query: 360 DTIFSIKTHLGHLLNPG-DYALGYDLYGAN---NNDIELDKYKGLILPDAILVKKSYEEK 415
D I++ HL PG D AL + N + + + +I A+L KS E +
Sbjct: 331 DLIYNFGCHLTDDYRPGVDPALSDPVLARRLRENRSLAMSRLDEVISKYAMLQDKSEEGE 390
Query: 416 RQKKRGKARSWKLKSLNMEVDDKVARADPDKMHSE-------YEQFLKDLEENPDLRFNI 468
R+K+R + + S + + P M S+ E +D EE+ +
Sbjct: 391 RKKRRARLQGTSSHSADTPEASLDSGEGPSGMASQGCPSASRAETDDEDDEESDE----- 445
Query: 469 SLYRNKEYQPSEIASVTDGEELPSVPLEELLADLELGEDEDEEDDMME 516
+E + E TD EE EE L ++ G+++DEE+D E
Sbjct: 446 ---EEEEEEEEEEEEATDSEE------EEDLEQMQEGQEDDEEEDEEE 484
>GARP_PLAFF (P13816) Glutamic acid-rich protein precursor
Length = 678
Score = 34.3 bits (77), Expect = 0.80
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 396 KYKGLILPDAILVKKSYEEKRQKKRGKARSWKLKSLNMEVDDKVARADPDKMHSEYEQFL 455
K K + +A L K+ + +K + K+ +++ + +S ++ D++ D ++ E E+
Sbjct: 528 KKKMAKIEEAELQKQKHVDKEEDKKEESKEVQEESKEVQEDEEEVEEDEEEEEEEEEEEE 587
Query: 456 KDLEENPDLRFNISLYRNKEYQPSEIASVTDGEELPSVPLEELLADLELGEDEDEEDD 513
++ EE +E + E D +E EE D E ED+ EEDD
Sbjct: 588 EEEEEE------------EEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEEDD 633
>MYS2_SCHPO (Q9USI6) Myosin type II heavy chain 1
Length = 1526
Score = 33.1 bits (74), Expect = 1.8
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 410 KSYEEKRQKKRGKAR-SWKLKSLNMEVDDKVARADPDKMHSEYEQFLKDLEENPDLRFNI 468
K++E++++K +R + +L+SL E++ K K+ EY++ L++++ LR +
Sbjct: 1269 KTFEDEKRKALIASRDNEELRSLKSELESK------RKLEVEYQKVLEEVKTTRSLRSEV 1322
Query: 469 SLYRNKEYQPSEIASVTDGEELPSV 493
+L RNK I S E+ V
Sbjct: 1323 TLLRNKVADHESIRSKLSEVEMKLV 1347
>K21A_HUMAN (Q7Z4S6) Kinesin family member 21A (Kinesin-like protein
KIF2) (NY-REN-62 antigen)
Length = 1674
Score = 33.1 bits (74), Expect = 1.8
Identities = 31/107 (28%), Positives = 44/107 (40%), Gaps = 13/107 (12%)
Query: 407 LVKKSYEE-KRQKKRGKARSWKLKSLNMEVDDKVARADPDKMHSEYEQFLKDLEENPDLR 465
L KK E+ KR++KR K R KL+ N E + D D ++
Sbjct: 540 LAKKDLEKLKRKEKRKKKRLQKLEESNREERSVAGKEDN-----------TDTDQEKKEE 588
Query: 466 FNISLYRNKEYQPSEIASVTDGEELPSVPLEELLADLELGEDEDEED 512
+S N E + E V+D E+ EE D++ GE DE D
Sbjct: 589 KGVSERENNELEVEESQEVSDHED-EEEEEEEEEDDIDGGESSDESD 634
>ARP2_DROME (P45888) Actin-like protein 2 (Actin-like protein 14D)
Length = 394
Score = 33.1 bits (74), Expect = 1.8
Identities = 35/162 (21%), Positives = 77/162 (46%), Gaps = 19/162 (11%)
Query: 310 SSFKSLLTSRQLVEYIVLDVEV---VSSEVTVGGTKYVLADAQVARVSD--FGKNDTIFS 364
+ F+++ ++ + YI D+E+ ++ E TV Y L D +V +V F + +F
Sbjct: 208 ADFETVRIMKEKLCYIGYDIEMEQRLALETTVLVESYTLPDGRVIKVGGERFEAPEALF- 266
Query: 365 IKTHLGHLLNPGDYALGYDLYGANNNDIELDKYKGLILPDAILVKKSYEEKRQKKRGKAR 424
+ HL ++ PG L ++ A + DI + YK ++L + + ++
Sbjct: 267 -QPHLINVEGPGIAELAFNTIQAADIDIRPELYKHIVLSGGSTMYPGLPSRLER------ 319
Query: 425 SWKLKSLNMEVDDKVARADPDKMHSEYEQFLKDLEENPDLRF 466
++K L +E +V + D +K+ ++++ ++D D+ F
Sbjct: 320 --EIKQLYLE---RVLKNDTEKL-AKFKIRIEDPPRRKDMVF 355
>RPC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1513
Score = 32.7 bits (73), Expect = 2.3
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 10/141 (7%)
Query: 287 NSIALLDPFTLRYCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVTVGGTKYVL- 345
+S +LDPF L + FL D + +S K L ++I +V + S + G +++
Sbjct: 1166 DSNIMLDPFQLNWHFLPHDSWEETSAKI-----HLGQFICENVCLFKSHIKKSGQIFIVN 1220
Query: 346 ADAQVARVSDFGKNDTIFSIKTHLGHLLNPGDYALGYDLYGANNNDIELDKYKGLILPDA 405
D+ V R + T ++ H G +L GD + + A ++DI +GL +
Sbjct: 1221 IDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKARSSDIT----QGLPKVEQ 1276
Query: 406 ILVKKSYEEKRQKKRGKARSW 426
I +S + + W
Sbjct: 1277 IFEARSIDSLSPNLERRIEDW 1297
>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC
6.3.2.-)
Length = 4065
Score = 32.3 bits (72), Expect = 3.0
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 395 DKYKGLILPDAILVKKSYEEKRQKKRGKARSWKLKSLNMEVDDKVARADPDKMHSEYEQF 454
D+ + L D V + + R++ R+ L L DD+ + D D Y+
Sbjct: 2362 DQAEDEFLSDGSSVSEDLTDDREETPDLYRNSTLGMLEPGRDDEFSDEDEDDDEDMYD-- 2419
Query: 455 LKDLEENPDLRFNISLYRNKEYQPS-EIASVTDGEELPSVPLEELLADLELGEDEDEEDD 513
D + + +L + + ++ E PS E + + E+ +P + + ++ +GE++DEED+
Sbjct: 2420 --DEQYDDELDYGDDMSQDNEDNPSDEEDDLGEMGEMGGMPGQPGVVEVLMGENDDEEDN 2477
>RH12_MACFA (Q9BE31) Rho-GTPase-activating protein 12 (QflA-11329)
Length = 847
Score = 32.0 bits (71), Expect = 4.0
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 355 DFGKNDTIFSIKTHLGHLL---NPGDYALG--YDLYGANNNDIELDKYKGL---ILPDAI 406
D +F +KT G L + D + + + + N+ +D +G+ ILPD+
Sbjct: 535 DKSSKKNVFELKTRQGTELLIQSDNDTVINDWFKVLSSTINNQAVDTDEGIEEEILPDSP 594
Query: 407 LVKKSYEEKRQKKRGKARSWKLKSLNMEVDDKVAR 441
++K +EK QK K RS+K+ S++ K +
Sbjct: 595 GIEKHDKEKEQKDPKKLRSFKVSSIDSSEQKKTKK 629
>POLG_PEV9U (O41174) Genome polyprotein [Contains: Coat protein VP4
(P1A); Coat protein VP2 (P1B); Coat protein VP3 (P1C);
Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core
protein P2A); Core protein P2B; Core protein P2C; Core
protein P3A; Genome
Length = 2168
Score = 32.0 bits (71), Expect = 4.0
Identities = 28/95 (29%), Positives = 42/95 (43%), Gaps = 11/95 (11%)
Query: 394 LDKYKGLILPDAILVKKSYEEKRQKKRGKARSWKLKSLNMEVDDKVARADPDKMHSEYEQ 453
+DKY GL LP +K K + K+GK+R + SLN D VA M +
Sbjct: 1852 IDKY-GLNLPMVTYIKDELRSKEKVKKGKSRLIEASSLN----DSVA------MRCYFGN 1900
Query: 454 FLKDLEENPDLRFNISLYRNKEYQPSEIASVTDGE 488
K +NP ++ + + S+I + DGE
Sbjct: 1901 LYKAFHQNPGTLTGCAVGCDPDTFWSKIPVMMDGE 1935
>NLPD_BUCAI (P57493) Protein nlpD/lppB homolog
Length = 334
Score = 32.0 bits (71), Expect = 4.0
Identities = 12/40 (30%), Positives = 27/40 (67%)
Query: 73 WIKLQLESKELLTFCLKKLQKNMSSSKVRMVHAEFIWTEP 112
++K +++K++ FC+KK++KN +S K++ + W+ P
Sbjct: 174 FLKDNIKTKKICFFCIKKIKKNNNSLKLKFFNFSNNWSWP 213
>NEB1_RAT (O35867) Neurabin-I (Neural tissue-specific F-actin
binding protein I) (Protein phosphatase 1 regulatory
subunit 9A) (p180) (PP1bp175)
Length = 1095
Score = 32.0 bits (71), Expect = 4.0
Identities = 28/91 (30%), Positives = 45/91 (48%), Gaps = 9/91 (9%)
Query: 64 ESYLQPPRTWIKLQLESKELLTFCLKK--LQKNMSSSKVRMVHAEFIWTEPHSKRIKVNV 121
E+ +Q +T KLQ E + + L+K LQ+N+ +K RMV E W E + VN
Sbjct: 692 EAEIQKLKT--KLQAAENEKVRWELEKNQLQQNIEENKERMVKLESYWIEAQTLCHTVNE 749
Query: 122 KVQKEVLNGAILEQSY-----LVEYVQQEHL 147
+++ LE+ Y L++ QQ+ L
Sbjct: 750 HLKETQSQYQALEKKYNKAKKLIKDFQQKEL 780
>RPC1_PLAFA (P27625) DNA-directed RNA polymerase III largest subunit
(EC 2.7.7.6)
Length = 2339
Score = 31.2 bits (69), Expect = 6.7
Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 10/156 (6%)
Query: 108 IWTEPH--SKRIKVNVKVQKEVLNGAILEQSYLVEYVQQEHLCESCSKVAANPDQWVAAV 165
+WT S IK N K + ++N I E+ Y ++ +HLC + S V + +
Sbjct: 703 LWTGKQLISVLIKPNKK-ENTIINFEIQEREYSNKFGDLKHLCLNDSYVCFYKSELICGS 761
Query: 166 QLRQHVSHRR--TFFYLEQLILKHGAAASAIRI-KQMDEGIDFYFSNRSHGVKFVEFIGK 222
++ + + F+YL + H ++ A++I ++ + YFSN+ + +
Sbjct: 762 LGKKVLGSSKYGLFYYL----IHHNSSHIALKIMNRLSKLTSRYFSNKGMTIGIDDVRPS 817
Query: 223 VAPIKSRSDKQLVSHDTKSNEYNYKHTFSVEISPIC 258
+ + D L ++ +NE + ++I P C
Sbjct: 818 QTLTEKKKDLLLKGYEKVNNEIILYNEKKMQIQPGC 853
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,245,436
Number of Sequences: 164201
Number of extensions: 2598050
Number of successful extensions: 7817
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 7783
Number of HSP's gapped (non-prelim): 40
length of query: 516
length of database: 59,974,054
effective HSP length: 115
effective length of query: 401
effective length of database: 41,090,939
effective search space: 16477466539
effective search space used: 16477466539
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0065.6