BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0063.10
(565 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RSC8_YEAST (P43609) Chromatin structure remodeling complex prote... 134 6e-31
SWI3_YEAST (P32591) Transcription regulatory protein SWI3 (SWI/S... 91 1e-17
ADA2_HUMAN (O75478) Transcriptional adapter 2-like (ADA2-like pr... 39 0.028
BAS1_YEAST (P22035) MYB-like DNA-binding protein BAS1 39 0.047
MKR1_HUMAN (Q9UHC7) Makorin 1 38 0.062
NCR1_HUMAN (O75376) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) 38 0.081
RA50_HALN1 (Q9HRW3) DNA double-strand break repair rad50 ATPase 37 0.18
CENB_MOUSE (P27790) Major centromere autoantigen B (Centromere p... 36 0.24
CENB_CRIGR (P48988) Major centromere autoantigen B (Centromere p... 36 0.24
YNW7_YEAST (P53863) Hypothetical 68.8 kDa protein in URE2-SSU72 ... 35 0.40
TMAF_AVIS4 (P23091) Transforming protein Maf 35 0.40
SPH1_XENLA (Q09003) Sphere organelles protein SPH-1 (Sphere prot... 35 0.40
NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa neurof... 35 0.40
MKR1_MOUSE (Q9QXP6) Makorin 1 35 0.40
FXD1_HUMAN (Q16676) Forkhead box protein D1 (Forkhead-related pr... 35 0.40
PLE1_CRIGR (Q9JI55) Plectin 1 (PLTN) (PCN) (300-kDa intermediate... 35 0.52
MKR1_MACEU (Q9TT91) Makorin 1 35 0.52
BRC1_RAT (O54952) Breast cancer type 1 susceptibility protein ho... 35 0.52
AMR1_MOUSE (Q9JHT5) AMME syndrome candidate gene 1 protein homolog 35 0.52
YKT5_YEAST (P36046) Hypothetical 47.4 kDa protein in PAS1-MST1 i... 35 0.68
>RSC8_YEAST (P43609) Chromatin structure remodeling complex protein
RSC8 (Remodel the structure of chromatin complex subunit
8) (SWI3 homolog)
Length = 557
Score = 134 bits (337), Expect = 6e-31
Identities = 91/289 (31%), Positives = 139/289 (47%), Gaps = 25/289 (8%)
Query: 26 IPSSSKWFAWDEIHETERTALKEFFDGTSISRTPKVYKEYRDFVINKYREDPSRKLTFTE 85
IPS + WF +IHE E+ + +FF+ +S +TPK YK+ R+F+IN YR P LT T
Sbjct: 82 IPSFASWFDISKIHEIEKRSNPDFFNDSSRFKTPKAYKDTRNFIINTYRLSPYEYLTITA 141
Query: 86 VRKSLVGDVTLLRKVFLFLESCGLINYGVGEAEKEEEREDEEEGEGERCKVRVEEGAPNG 145
VR+++ DV + K+ FLE GLINY + K G +V P G
Sbjct: 142 VRRNVAMDVASIVKIHAFLEKWGLINYQIDPRTKPSLIGPSFTGH-----FQVVLDTPQG 196
Query: 146 IRVVATPNSLKPLSAPRNAKSGGGGGGSVSGGAGVKLPPLASFADVYGDLMSAKELN--- 202
++ N +K + + G G V V L + D D + ++ +
Sbjct: 197 LKPFLPENVIK-----QEVEGGDGAEPQVKKEFPVNLTIKKNVYDSAQDFNALQDESRNS 251
Query: 203 --------CGICGDKCGFEHYRSTKDNFT-ICMKCFKNGNYGEKRSVEDFILNESNENSV 253
C CG++ Y + + T +C +CF+ G++G DFI E+N NSV
Sbjct: 252 RQIHKVYICHTCGNESINVRYHNLRARDTNLCSRCFQEGHFGANFQSSDFIRLENNGNSV 311
Query: 254 KQSTVWTEGETLLLLESVLKHGDDWELVAQSVQTKTKL-DCISKLIELP 301
K++ W++ E LLLLE + + D WE +A V ++ DCI K + LP
Sbjct: 312 KKN--WSDQEMLLLLEGIEMYEDQWEKIADHVGGHKRVEDCIEKFLSLP 358
>SWI3_YEAST (P32591) Transcription regulatory protein SWI3 (SWI/SNF
complex component SWI3) (Transcription factor TYE2)
Length = 825
Score = 90.5 bits (223), Expect = 1e-17
Identities = 89/336 (26%), Positives = 137/336 (40%), Gaps = 63/336 (18%)
Query: 2 EVLKD--PNSNPGRTDDSESELELY--------TIPSSSKWFAWDEIHETERTALKEFFD 51
E++ D ++NP +T + E E + IPS SKWF ++IH E +L EFF
Sbjct: 273 EIMNDHSKSANPKKTTITRVEPETFEIPQAHEIVIPSYSKWFNLEKIHSIEVQSLPEFFT 332
Query: 52 GTSISRTPKVYKEYRDFVINKYREDPSRKLTFTEVRKSLVGDVTLLRKVFLFLESCGLIN 111
S+TP+VY YR+F++N YR +P+ + T R+++ GD L ++ FL GLIN
Sbjct: 333 NRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKFLTKWGLIN 392
Query: 112 YGVGEAEKEEEREDEEEGEGERCKVRVEEGAPNGIRVVATPNSLKPLSAPRNAKSGGGGG 171
Y V + E + AP G+ S KP
Sbjct: 393 YQVDSKLLPKNIEPPLTSQ-----YSTRHDAPRGLFPF---ESYKP-------------- 430
Query: 172 GSVSGGAGVKLPPLASFADVYGDLMSAKELNCGICGDKCGFE---HYRSTKDNFTICMKC 228
V+LP +A + S L + K ++ H ST D+
Sbjct: 431 -------SVQLPDMAKLKKMMNTSDSESTLYKYLKESKRKYDEITHPPSTTDD----ENG 479
Query: 229 FKNGNYGEKRS--------VEDFILNESNENSVKQSTV---------WTEGETLLLLESV 271
KN N G+ + D L E E S V W++ + LL+ +
Sbjct: 480 DKNDNGGKMNNEVSTSTSMTGDANLLEEGETSRPLKKVKILEQIDENWSKEDLQKLLKGI 539
Query: 272 LKHGDDWELVAQSVQTKTKLDCISKLIELPFGELML 307
+ G DW VA++V K+ CI + ++LP + L
Sbjct: 540 QEFGADWYKVAKNVGNKSPEQCILRFLQLPIEDKFL 575
>ADA2_HUMAN (O75478) Transcriptional adapter 2-like (ADA2-like
protein) (KL04P)
Length = 443
Score = 39.3 bits (90), Expect = 0.028
Identities = 25/74 (33%), Positives = 41/74 (54%), Gaps = 4/74 (5%)
Query: 222 FTICMKCFKNG-NYGEKRSVEDFILNESNENSVKQSTVWTEGETLLLLESVLKHG-DDWE 279
F +C++CF G Y + +S + + S+ + S WT E + LLE+V+ G +W+
Sbjct: 39 FFLCLQCFTRGFEYKKHQSDHTYEIMTSDFPVLDPS--WTAQEEMALLEAVMDCGFGNWQ 96
Query: 280 LVAQSVQTKTKLDC 293
VA + TKTK +C
Sbjct: 97 DVANQMCTKTKEEC 110
>BAS1_YEAST (P22035) MYB-like DNA-binding protein BAS1
Length = 811
Score = 38.5 bits (88), Expect = 0.047
Identities = 41/186 (22%), Positives = 79/186 (42%), Gaps = 39/186 (20%)
Query: 237 KRSVEDFILNESNENSVKQSTVWTEGETLLLLESVLKHGDDWELVAQSVQTKTKLDC--- 293
KR +E +L ++ +++ WT E L L+ V +G W ++ ++ + L C
Sbjct: 155 KRYIE--VLGPGSKGRLRE---WTLEEDLNLISKVKAYGTKWRKISSEMEFRPSLTCRNR 209
Query: 294 ----ISKLIELPFGELMLGSAHRNDNINIANG------IVNNAIQVQSSSSDHQETSKTQ 343
I+ ++ E++ + N NI++ +G I ++ I+ S+ + ++ +Q
Sbjct: 210 WRKIITMVVRGQASEVITKAIKENKNIDMTDGKLRQHPIADSDIRSDSTPNKEEQLQLSQ 269
Query: 344 NQTPELTSE----------------KEPNGDAVNESPSKRQRVAALSESSSS---LMKQV 384
P L + K+ +G +N+ SK Q + L E S+ M QV
Sbjct: 270 QNNPSLIKQDILNVKENESSKLPRLKDNDGPILND--SKPQALPPLKEISAPPPIRMTQV 327
Query: 385 GLISTS 390
G TS
Sbjct: 328 GQTHTS 333
>MKR1_HUMAN (Q9UHC7) Makorin 1
Length = 482
Score = 38.1 bits (87), Expect = 0.062
Identities = 28/101 (27%), Positives = 41/101 (39%), Gaps = 18/101 (17%)
Query: 141 GAPNGIRVVATPNSLKPLSAPRNAKSGGGGGGSVSGGAGVKLPPLASFADVYGDLMSAKE 200
GA A+P + ++AP GGGGG SGG K ++ +
Sbjct: 17 GAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTK-------------QVTCRY 63
Query: 201 LNCGIC--GDKCGFEHYRSTKDNFTICMKCFKNGN--YGEK 237
G+C GD C + H S +C K F+ G YG++
Sbjct: 64 FMHGVCKEGDNCRYSHDLSDSPYSVVC-KYFQRGYCIYGDR 103
>NCR1_HUMAN (O75376) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR)
Length = 2440
Score = 37.7 bits (86), Expect = 0.081
Identities = 38/204 (18%), Positives = 88/204 (42%), Gaps = 23/204 (11%)
Query: 255 QSTVWTEGETLLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIELPFGELMLGSAHRND 314
+++ WTE E + + +++HG +W +A+ V TK++ C + H D
Sbjct: 624 ETSRWTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKNFYFNYK-------RRHNLD 676
Query: 315 NINIANGIVNNAIQVQSSSSDHQETSKTQNQTPELTSEKEPNGDAVNESPS-KRQRVAAL 373
N+ + + + + ++ S+ ++ ++++++ + +A NE + + V A+
Sbjct: 677 NL-----LQQHKQKTSRKPREERDVSQCESVASTVSAQEDEDIEASNEEENPEDSEVEAV 731
Query: 374 --SESSSSLMKQVGLISTSVDPHITAAAADAAITALCDENLCPREIFDVEEDYASSANSL 431
SE S G +V+ T A + +L + P E VE +
Sbjct: 732 KPSEDSPENATSRGNTEPAVELEPTTETAPSTSPSLAVPSTKPAEDESVE--------TQ 783
Query: 432 ISDSERAHEVEGLEMDRSTQAEKD 455
++DS A E +++D+ + ++
Sbjct: 784 VNDSISAETAEQMDVDQQEHSAEE 807
Score = 34.3 bits (77), Expect = 0.89
Identities = 37/198 (18%), Positives = 78/198 (38%), Gaps = 25/198 (12%)
Query: 236 EKRSVEDFILNESNENSVKQ------STVWTEGETLLLLESVLKHGDDWELVAQSVQTKT 289
E+R V+ +N E+ +K VWT+ E + + ++H ++ L+A ++ K+
Sbjct: 411 EQRRVKFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKS 470
Query: 290 KLDCI------------SKLIELPFGE-----LMLGSAHRNDNINIANGIVNNAIQVQSS 332
DC+ L+ +G+ + + + + + +
Sbjct: 471 VPDCVLYYYLTKKNENYKALVRRNYGKRRGRNQQIARPSQEEKVEEKEEDKAEKTEKKEE 530
Query: 333 SSDHQETSKTQNQTPELTSEKEPNGDAVNESPSKRQRVAALSESSSSLMKQVGLISTSVD 392
+E + + E T EK+ E+ + Q ++++S ++ G I+ S+
Sbjct: 531 EKKDEEEKDEKEDSKENTKEKDKIDGTAEETEEREQATPRGRKTANSQGRRKGRITRSMT 590
Query: 393 PHITAAAADAAITALCDE 410
AAAA AA A +E
Sbjct: 591 NE--AAAASAAAAAATEE 606
>RA50_HALN1 (Q9HRW3) DNA double-strand break repair rad50 ATPase
Length = 883
Score = 36.6 bits (83), Expect = 0.18
Identities = 53/275 (19%), Positives = 113/275 (40%), Gaps = 35/275 (12%)
Query: 279 ELVAQSVQTKTKLDCISKLIELPFGELMLGSAHRNDNINIAN--GIVNNAIQVQSSSSDH 336
EL A+ + +LD +++ ++ GE ++ + R D++ + Q + +
Sbjct: 479 ELDAELADVEDELDAVAQRVDR--GESLVAAEDRVDDLEQQRERAVERRDEQADIADAKR 536
Query: 337 QETSKTQNQTPELTSEKEP-NGDAV---NESPSKRQRVAALSESSSSLMKQVGLISTSVD 392
+ ++ +++ +L +E E DA + + KR+ +AAL+ ++L +++ ++ VD
Sbjct: 537 DQAAEKRDRAADLDAEAEDARADAAAKRDAADEKRETLAALNADQTALKERLDALADLVD 596
Query: 393 PHITAAAADAAITALCDENLCPREIFDVEEDYASSANSLISDSERAHEVEGLEMDRSTQA 452
AA A A L ++ + D S + + + +E R+ +
Sbjct: 597 RLEAAADAREAAQRLAEKRAALAAQNEQRRDRLSELRERKRTLDSEFDADRIETARADKD 656
Query: 453 EKDD------------RGPKDDIPLPLRLRAGIATALGAAAARAKLMADQE-------DR 493
+D R +DD L+A I A A A L + E D
Sbjct: 657 RAEDYLEQVEPKLQALREDRDD------LQAKIGAAENAIAELESLREEHERVQSRHQDL 710
Query: 494 EIEHLVATIIEAQIGKLQHKVK--HFDELELLMKK 526
+ H T +E G+L+ +++ + +LE L+ +
Sbjct: 711 QAVHDEVTALETMYGELRAELRQQNVSKLERLLNE 745
Score = 34.7 bits (78), Expect = 0.68
Identities = 48/220 (21%), Positives = 87/220 (38%), Gaps = 11/220 (5%)
Query: 329 VQSSSSDHQETSKTQNQTPELTSEKEPNGDAVNESPSKRQRVAALSESSSSLMKQVGLIS 388
++ ++ ++ +T++ ++ E + A+ + + +A + E+ + ++ ++
Sbjct: 222 IEHFEAEREQARQTRDDAADVLERYEESRTALADV---EETIADVREAVAEAERERETLA 278
Query: 389 TSVDPHITAAAA--DAAITALCDENLCPREIFDVEEDYASSANSLISDSERAHEVEGLEM 446
V H A+ D A D L + D + + A+ + +ER EV
Sbjct: 279 DRVSDHRERASDLDDEAAALAADLGLDDPDAEDASAERDAVADQREAVAERVREVAPAVS 338
Query: 447 DRSTQAEK--DDRGPKDDIPLPLRLRAGIATALGAAAARAKLMADQEDREIEHLVATIIE 504
+ QA+ DD D+ LR A AL A A A D IE L A I E
Sbjct: 339 RLTEQADSAADDAATLDERAETLREEAA---ALDAEADDAAAKRDDAAARIEALDADI-E 394
Query: 505 AQIGKLQHKVKHFDELELLMKKEHAEIEELKDSILTERID 544
A + F E + AE +EL++ + T R D
Sbjct: 395 AAMAAFDDAPVAFGAAEAFLDDATAERDELRERVATLRAD 434
>CENB_MOUSE (P27790) Major centromere autoantigen B (Centromere
protein B) (CENP-B)
Length = 599
Score = 36.2 bits (82), Expect = 0.24
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 116 EAEKEEEREDEEEGEGERCKVRVEEGAPNG 145
E E+EEE E+EEEGEGE + EEG G
Sbjct: 410 EEEEEEEEEEEEEGEGEEEEEEEEEGEEEG 439
>CENB_CRIGR (P48988) Major centromere autoantigen B (Centromere
protein B) (CENP-B)
Length = 606
Score = 36.2 bits (82), Expect = 0.24
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 116 EAEKEEEREDEEEGEGERCKVRVEEGAPNG 145
E E+EEE E+EEEGEGE + EEG G
Sbjct: 410 EEEEEEEEEEEEEGEGEEEEEEEEEGEEEG 439
>YNW7_YEAST (P53863) Hypothetical 68.8 kDa protein in URE2-SSU72
intergenic region
Length = 590
Score = 35.4 bits (80), Expect = 0.40
Identities = 35/175 (20%), Positives = 71/175 (40%), Gaps = 1/175 (0%)
Query: 212 FEHYRSTKDNFTICMKCFK-NGNYGEKRSVEDFILNESNENSVKQSTVWTEGETLLLLES 270
FE+ ++ K+ + +CF N + ++ +++ I + ++ ++++ E E + L
Sbjct: 324 FENSKNDKEGEVLIYECFICNKTFKSEKQLKNHINTKLHKKNMEEIRKEMEEENITLGLD 383
Query: 271 VLKHGDDWELVAQSVQTKTKLDCISKLIELPFGELMLGSAHRNDNINIANGIVNNAIQVQ 330
L + ++ +SV+ K +D + EL E L + D N + I+V+
Sbjct: 384 NLSDLEKFDSADESVKEKEDIDLQALQAELAEIERKLAESSSEDESEDDNLNIEMDIEVE 443
Query: 331 SSSSDHQETSKTQNQTPELTSEKEPNGDAVNESPSKRQRVAALSESSSSLMKQVG 385
SSD T+N+ +K ES S S L+ +G
Sbjct: 444 DVSSDENVHVNTKNKKKRKKKKKAKVDTETEESESFDDTKDKRSNELDDLLASLG 498
>TMAF_AVIS4 (P23091) Transforming protein Maf
Length = 369
Score = 35.4 bits (80), Expect = 0.40
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 141 GAPNGIRVVATPNSLKPLSAPRNAKSGGGGGGSVSGGAG 179
G P+G A P S P SA +A GGGGG GGAG
Sbjct: 191 GHPHG----AAPGSAPPSSASSSAAGSGGGGGGGGGGAG 225
>SPH1_XENLA (Q09003) Sphere organelles protein SPH-1 (Sphere protein
1)
Length = 536
Score = 35.4 bits (80), Expect = 0.40
Identities = 39/134 (29%), Positives = 63/134 (46%), Gaps = 14/134 (10%)
Query: 330 QSSSSDHQETSKTQNQTPELTSEKEPNGDAVNESPSKRQRVAALSES---SSSLMKQVGL 386
Q+SSSD +TS +Q P T++++P +S +KRQ AA ES S S G+
Sbjct: 213 QTSSSDSSDTSSCSDQ-PTPTTQQKP------QSSAKRQNQAATRESVTHSVSPKAVNGI 265
Query: 387 IST---SVDPHITAAAADAAITALCDENLCPREIFDVEEDYASSANSLISDSERAHEVEG 443
ST D I+++ D A+ + +CP D+ + S SDS + E+
Sbjct: 266 SSTKNKKADAPISSSDMDTAVGG-NETLICPVPPEDLSTHIQQHSQSPTSDSAESIELVI 324
Query: 444 LEMDRSTQAEKDDR 457
+ + S + D+R
Sbjct: 325 KKSNASLSSLTDNR 338
>NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa
neurofilament protein) (Neurofilament medium
polypeptide) (NF-M)
Length = 845
Score = 35.4 bits (80), Expect = 0.40
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 116 EAEKEEEREDEEEGEGERCKVRVEEGAPNGIRVVATPNSLKPLSAPRNAKS 166
E E+EEE E E EGEGE + + E+ + +A +K + P AKS
Sbjct: 554 EGEQEEEGETEAEGEGEEAEAKEEKKTEGKVEEMAIKEEIK-VEKPEKAKS 603
>MKR1_MOUSE (Q9QXP6) Makorin 1
Length = 481
Score = 35.4 bits (80), Expect = 0.40
Identities = 28/101 (27%), Positives = 41/101 (39%), Gaps = 18/101 (17%)
Query: 141 GAPNGIRVVATPNSLKPLSAPRNAKSGGGGGGSVSGGAGVKLPPLASFADVYGDLMSAKE 200
GA A+ S+ ++AP GGGGG SGG K ++ +
Sbjct: 17 GAAAAAVAAASLTSIPTVAAPSPGAGGGGGGSDGSGGGWTK-------------QVTCRY 63
Query: 201 LNCGIC--GDKCGFEHYRSTKDNFTICMKCFKNGN--YGEK 237
G+C GD C + H S +C K F+ G YG++
Sbjct: 64 FMHGVCKEGDNCRYSHDLSDSPYGVVC-KYFQRGYCVYGDR 103
>FXD1_HUMAN (Q16676) Forkhead box protein D1 (Forkhead-related
protein FKHL8) (Forkhead-related transcription factor 4)
(FREAC-4)
Length = 465
Score = 35.4 bits (80), Expect = 0.40
Identities = 29/91 (31%), Positives = 41/91 (44%), Gaps = 24/91 (26%)
Query: 113 GVGEAEKEEEREDEEEGEGERCKVRV--------------------EEGAPNGIRVVATP 152
G GE E++EE ED++EG G ++ V EE + ++A P
Sbjct: 23 GEGEDEEDEEEEDDDEGGGGGPRLAVPAQRRRRRRSYAGEDELEDLEEEEDDDDILLAPP 82
Query: 153 ---NSLKPLSAP-RNAKSGGGGGGSVSGGAG 179
+ P AP A +GGGGGG +GG G
Sbjct: 83 AGGSPAPPGPAPAAGAGAGGGGGGGGAGGGG 113
>PLE1_CRIGR (Q9JI55) Plectin 1 (PLTN) (PCN) (300-kDa intermediate
filament-associated protein) (IFAP300) (Fragment)
Length = 4473
Score = 35.0 bits (79), Expect = 0.52
Identities = 47/210 (22%), Positives = 91/210 (42%), Gaps = 12/210 (5%)
Query: 328 QVQSSSSDHQETSKTQ-NQTPELTSEKEPNGDAVNESPS-KRQRVAALSESSSSLMK--- 382
Q+Q+ + + ++ Q Q L E E +G+ V E +Q + A+ + L+
Sbjct: 1158 QIQAVPIPNSQAAREQLRQEKALLEEIERHGEKVEECQKFAKQYINAIKDYELQLVTYKA 1217
Query: 383 QVGLISTSVDPHITAAAADAAITALCDENLCPREIFDVEEDYASSANSLISDSERAHEVE 442
Q+ +++ + +++ I D E+ + Y IS++ R E E
Sbjct: 1218 QLEPVASPAKKPKVQSGSESVIQEYVDLRTRYSELTTLTSQYIK----FISETLRRMEEE 1273
Query: 443 GLEMDRSTQAEKDDRGPKDDIPLPLRLRAGIATALGAAAARAKLMADQEDREIEHLVATI 502
+ +AE+ +R + + L + + +A A A A+A+L A + R ++ VA
Sbjct: 1274 E-RLAEQQRAEERERLAEGEAALEKQRQ--LAEAHAQAKAQAELEAQELQRRMQEEVARR 1330
Query: 503 IEAQIGKLQHKVKHFDELELLMKKEHAEIE 532
EA + Q K +EL+ L + AEI+
Sbjct: 1331 EEAAVNAQQQKRSIQEELQHLRQSSEAEIQ 1360
>MKR1_MACEU (Q9TT91) Makorin 1
Length = 478
Score = 35.0 bits (79), Expect = 0.52
Identities = 25/87 (28%), Positives = 37/87 (41%), Gaps = 17/87 (19%)
Query: 141 GAPNGIRVVATPNSLKPLSAPRNAKSGGGGGGSVSGGAGVKLPPLASFADVYGDLMSAKE 200
GA V A +L P A ++ +GGGGGG SGG K ++ +
Sbjct: 15 GAAAAAAVAAASPTLTPTVASQSPAAGGGGGG--SGGGWTK-------------QVTCRY 59
Query: 201 LNCGIC--GDKCGFEHYRSTKDNFTIC 225
G+C G+ C + H ST + +C
Sbjct: 60 FMHGVCKKGNNCRYSHDLSTSQSAMVC 86
>BRC1_RAT (O54952) Breast cancer type 1 susceptibility protein
homolog
Length = 1817
Score = 35.0 bits (79), Expect = 0.52
Identities = 21/76 (27%), Positives = 36/76 (46%), Gaps = 9/76 (11%)
Query: 327 IQVQSSSSDHQETSKTQNQTP-------ELTSEKEPNGDAVNESPSK--RQRVAALSESS 377
+Q++S S + NQTP +L + EP DA P++ R+R A+ +
Sbjct: 632 LQIESCGSSEETKKNNSNQTPAGHIREPQLIEDTEPAADAKKNEPNEHIRKRSASDAFPE 691
Query: 378 SSLMKQVGLISTSVDP 393
LM + GL+++ P
Sbjct: 692 EKLMNKAGLLTSCSSP 707
>AMR1_MOUSE (Q9JHT5) AMME syndrome candidate gene 1 protein homolog
Length = 344
Score = 35.0 bits (79), Expect = 0.52
Identities = 19/34 (55%), Positives = 22/34 (63%), Gaps = 4/34 (11%)
Query: 157 PLSAPRNAKSGGGGGG---SVSGGAGVKL-PPLA 186
PLS P+ GGGGGG S SGG G+ L PPL+
Sbjct: 72 PLSPPQGCGGGGGGGGGGGSGSGGGGISLSPPLS 105
>YKT5_YEAST (P36046) Hypothetical 47.4 kDa protein in PAS1-MST1
intergenic region
Length = 427
Score = 34.7 bits (78), Expect = 0.68
Identities = 45/215 (20%), Positives = 88/215 (40%), Gaps = 32/215 (14%)
Query: 184 PLASFADVYGDLMSAKELNCGICGDKCGFEHYRSTKDNFTICMKCFKNGNYGEKRSVEDF 243
PL + V D + +EL+ G G + + DN + K +NG+ + ++ E
Sbjct: 94 PLFASRKVESDKTAEEELSSG------GEQSPENEDDNNS---KSDENGDDNDSKNDETE 144
Query: 244 ILNESNENSVKQSTVWTEGETLLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIELPFG 303
+ + + S V +GE ++L E K +D + V TK E
Sbjct: 145 AGPQLGGDKIGASKVAEDGELVVLAEEDNKSSEDKDTDESKVSTKDD--------EQSNE 196
Query: 304 ELMLGSAHRNDNINIANG--------IVNNAIQVQSSSSDHQETSKT-QNQTPELTSEKE 354
+ + +++NI+ N + NNA + +H + K+ Q Q+ + T+ ++
Sbjct: 197 DNATANNQKDENISSENSEENTSDKTLDNNAGSSEKKDPEHSDDEKSQQGQSDDKTTTED 256
Query: 355 PNGD------AVNESPSKRQRVAALSESSSSLMKQ 383
NG+ V++S + ++ + E L KQ
Sbjct: 257 NNGEEESSKKTVSDSENSAKQSESSDEEKEELRKQ 291
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.311 0.130 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,832,705
Number of Sequences: 164201
Number of extensions: 2950179
Number of successful extensions: 18406
Number of sequences better than 10.0: 160
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 17705
Number of HSP's gapped (non-prelim): 501
length of query: 565
length of database: 59,974,054
effective HSP length: 115
effective length of query: 450
effective length of database: 41,090,939
effective search space: 18490922550
effective search space used: 18490922550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0063.10